© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|5486 |
| Gene name | |
| Location | Contig_2749:499..1762 |
| Strand | + |
| Gene length (bp) | 1263 |
| Transcript length (bp) | 1206 |
| Coding sequence length (bp) | 1206 |
| Protein length (aa) | 402 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01545 | Cation_efflux | Cation efflux family | 1.7E-11 | 105 | 304 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14329|ZRG17_SCHPO | Probable zinc transporter zrg17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=zrg17 PE=1 SV=1 | 39 | 396 | 9.0E-37 |
| sp|P53735|ZRG17_YEAST | Protein ZRG17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZRG17 PE=1 SV=1 | 5 | 201 | 2.0E-18 |
| sp|Q6ICY4|MTPC2_ARATH | Metal tolerance protein C2 OS=Arabidopsis thaliana GN=MTPC2 PE=2 SV=1 | 150 | 362 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0005575 | cellular_component | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 89 | 106 | 17 |
| 2 | 116 | 138 | 22 |
| 3 | 159 | 181 | 22 |
| 4 | 201 | 223 | 22 |
| 5 | 243 | 265 | 22 |
| 6 | 275 | 297 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5486 MSTYDEAGDTASPATESNPFNFKTQVISASPIKSNIGQRRGHKYKHSSISTQHQIFQEPPHRPPPVLPASLPIPT IPEAWKSMHRDQRTRLYWSLCHLALAVYIFFRSHASLAAKALSHLVFFDAGSAAVSVAVDVLGNFEVWRRSSIRH PFGLERAEVLVGFAFSIFLLFGGFDLISHNLKHMLEFMGDHEAHHEHAHDHISRGSVDLIAASAIASTLISAYGL KNHFRIAKVMRVSCLAALPSILSNPFHFLTLLFSALIATLPSFSNPLQAWLDRVICAVISLAMFGLGVRLAVAQG LMLLMSYGGSNGNPSVSSVLHEIESEPDISGVEDAQFWQVNYGLCIANIKVSVAKGYEESALSRLRNRISSLIQN RLGEGYGTGGTIRWEVTLQINADVVT* |
| Coding | >Hirsu2|5486 ATGTCCACTTATGACGAGGCTGGGGACACGGCCTCGCCTGCCACTGAGTCGAACCCCTTCAACTTCAAGACCCAG GTCATCTCAGCTTCCCCAATCAAATCTAACATTGGCCAGCGCCGTGGTCATAAATACAAACACAGCAGCATCTCG ACACAGCACCAAATCTTTCAGGAGCCACCCCACAGGCCGCCCCCGGTTCTTCCCGCGTCGCTGCCCATACCTACG ATACCTGAGGCTTGGAAGAGCATGCACAGAGACCAGCGAACCAGGCTTTATTGGAGCCTATGCCATCTCGCTCTC GCTGTCTATATCTTCTTCCGATCCCACGCCTCCCTCGCGGCAAAGGCTCTCTCACATCTTGTCTTTTTCGATGCC GGGAGTGCGGCTGTCTCTGTTGCTGTCGATGTACTCGGAAACTTTGAAGTATGGCGACGAAGCAGCATCAGACAC CCCTTCGGTCTCGAGAGGGCAGAAGTTCTCGTTGGCTTTGCTTTTTCCATCTTCCTTCTTTTTGGCGGCTTCGAC CTCATCTCACACAATCTCAAACACATGCTTGAATTCATGGGCGACCACGAGGCTCATCATGAGCATGCCCATGAT CACATTTCGCGGGGATCTGTCGACTTGATCGCCGCTAGTGCCATAGCGAGCACTCTGATCTCGGCCTATGGCCTC AAGAATCATTTCCGCATTGCAAAAGTGATGAGGGTTTCCTGCCTAGCGGCTTTGCCCAGCATCCTGTCCAACCCC TTTCACTTTTTGACCCTACTCTTTTCAGCGTTAATAGCTACGCTACCCTCTTTCTCCAACCCGCTCCAGGCGTGG CTGGACCGAGTCATATGCGCCGTCATTTCCCTTGCCATGTTTGGTCTCGGGGTACGTCTCGCTGTCGCTCAAGGG CTAATGCTACTTATGTCATATGGAGGCAGTAACGGAAACCCAAGTGTCTCTTCAGTCTTGCATGAAATCGAATCA GAACCGGATATTTCGGGCGTCGAAGATGCCCAGTTCTGGCAAGTCAATTATGGGCTCTGTATAGCCAATATTAAG GTCAGCGTTGCCAAGGGATATGAAGAGTCGGCGTTGAGTAGATTGCGCAACCGCATATCCTCGCTGATACAGAAT CGACTTGGCGAAGGCTACGGCACAGGAGGCACCATCCGGTGGGAAGTGACCTTGCAAATAAATGCGGATGTTGTC ACTTAA |
| Transcript | >Hirsu2|5486 ATGTCCACTTATGACGAGGCTGGGGACACGGCCTCGCCTGCCACTGAGTCGAACCCCTTCAACTTCAAGACCCAG GTCATCTCAGCTTCCCCAATCAAATCTAACATTGGCCAGCGCCGTGGTCATAAATACAAACACAGCAGCATCTCG ACACAGCACCAAATCTTTCAGGAGCCACCCCACAGGCCGCCCCCGGTTCTTCCCGCGTCGCTGCCCATACCTACG ATACCTGAGGCTTGGAAGAGCATGCACAGAGACCAGCGAACCAGGCTTTATTGGAGCCTATGCCATCTCGCTCTC GCTGTCTATATCTTCTTCCGATCCCACGCCTCCCTCGCGGCAAAGGCTCTCTCACATCTTGTCTTTTTCGATGCC GGGAGTGCGGCTGTCTCTGTTGCTGTCGATGTACTCGGAAACTTTGAAGTATGGCGACGAAGCAGCATCAGACAC CCCTTCGGTCTCGAGAGGGCAGAAGTTCTCGTTGGCTTTGCTTTTTCCATCTTCCTTCTTTTTGGCGGCTTCGAC CTCATCTCACACAATCTCAAACACATGCTTGAATTCATGGGCGACCACGAGGCTCATCATGAGCATGCCCATGAT CACATTTCGCGGGGATCTGTCGACTTGATCGCCGCTAGTGCCATAGCGAGCACTCTGATCTCGGCCTATGGCCTC AAGAATCATTTCCGCATTGCAAAAGTGATGAGGGTTTCCTGCCTAGCGGCTTTGCCCAGCATCCTGTCCAACCCC TTTCACTTTTTGACCCTACTCTTTTCAGCGTTAATAGCTACGCTACCCTCTTTCTCCAACCCGCTCCAGGCGTGG CTGGACCGAGTCATATGCGCCGTCATTTCCCTTGCCATGTTTGGTCTCGGGGTACGTCTCGCTGTCGCTCAAGGG CTAATGCTACTTATGTCATATGGAGGCAGTAACGGAAACCCAAGTGTCTCTTCAGTCTTGCATGAAATCGAATCA GAACCGGATATTTCGGGCGTCGAAGATGCCCAGTTCTGGCAAGTCAATTATGGGCTCTGTATAGCCAATATTAAG GTCAGCGTTGCCAAGGGATATGAAGAGTCGGCGTTGAGTAGATTGCGCAACCGCATATCCTCGCTGATACAGAAT CGACTTGGCGAAGGCTACGGCACAGGAGGCACCATCCGGTGGGAAGTGACCTTGCAAATAAATGCGGATGTTGTC ACTTAA |
| Gene | >Hirsu2|5486 ATGTCCACTTATGACGAGGCTGGGGACACGGCCTCGCCTGCCACTGAGTCGAACCCCTTCAACTTCAAGACCCAG GTCATCTCAGCTTCCCCAATCAAATCTGTACGACCCTGTTGCTGCCAAGGAAAATATATCTCACTTCAGCTAACC TCGCGACAGAACATTGGCCAGCGCCGTGGTCATAAATACAAACACAGCAGCATCTCGACACAGCACCAAATCTTT CAGGAGCCACCCCACAGGCCGCCCCCGGTTCTTCCCGCGTCGCTGCCCATACCTACGATACCTGAGGCTTGGAAG AGCATGCACAGAGACCAGCGAACCAGGCTTTATTGGAGCCTATGCCATCTCGCTCTCGCTGTCTATATCTTCTTC CGATCCCACGCCTCCCTCGCGGCAAAGGCTCTCTCACATCTTGTCTTTTTCGATGCCGGGAGTGCGGCTGTCTCT GTTGCTGTCGATGTACTCGGAAACTTTGAAGTATGGCGACGAAGCAGCATCAGACACCCCTTCGGTCTCGAGAGG GCAGAAGTTCTCGTTGGCTTTGCTTTTTCCATCTTCCTTCTTTTTGGCGGCTTCGACCTCATCTCACACAATCTC AAACACATGCTTGAATTCATGGGCGACCACGAGGCTCATCATGAGCATGCCCATGATCACATTTCGCGGGGATCT GTCGACTTGATCGCCGCTAGTGCCATAGCGAGCACTCTGATCTCGGCCTATGGCCTCAAGAATCATTTCCGCATT GCAAAAGTGATGAGGGTTTCCTGCCTAGCGGCTTTGCCCAGCATCCTGTCCAACCCCTTTCACTTTTTGACCCTA CTCTTTTCAGCGTTAATAGCTACGCTACCCTCTTTCTCCAACCCGCTCCAGGCGTGGCTGGACCGAGTCATATGC GCCGTCATTTCCCTTGCCATGTTTGGTCTCGGGGTACGTCTCGCTGTCGCTCAAGGGCTAATGCTACTTATGTCA TATGGAGGCAGTAACGGAAACCCAAGTGTCTCTTCAGTCTTGCATGAAATCGAATCAGAACCGGATATTTCGGGC GTCGAAGATGCCCAGTTCTGGCAAGTCAATTATGGGCTCTGTATAGCCAATATTAAGGTCAGCGTTGCCAAGGGA TATGAAGAGTCGGCGTTGAGTAGATTGCGCAACCGCATATCCTCGCTGATACAGAATCGACTTGGCGAAGGCTAC GGCACAGGAGGCACCATCCGGTGGGAAGTGACCTTGCAAATAAATGCGGATGTTGTCACTTAA |