Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5456
Gene name
LocationContig_273:9274..9795
Strand+
Gene length (bp)521
Transcript length (bp)441
Coding sequence length (bp)441
Protein length (aa) 147

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.1927 0.0529 0.8609 0.0789 0.0627 0.0247 0.3696 0.373 0.3363 0.0037

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 7 29 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup7625
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|5456 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5456
MLLSFVRVFVFLATVDTALSLVIVGWPSWTKIPFWPPKADDFLQQSDVKESSPQEPTHVEDTQTEANEHITRNEF
CSLRYTTQRNSTCDQILERNSLTLEKFLHMNPSLHGSCKELPAGTTVCVKTKVIVVDGSCWGKPDHIFDYC*
Coding >Hirsu2|5456
ATGTTGCTATCATTCGTCCGAGTCTTTGTTTTCCTAGCTACCGTTGACACAGCGCTCTCTCTCGTCATTGTCGGC
TGGCCCTCATGGACCAAAATTCCTTTCTGGCCGCCCAAGGCAGATGATTTCTTGCAACAATCAGATGTCAAGGAG
AGCTCGCCCCAAGAACCGACCCACGTGGAAGACACCCAGACGGAAGCGAATGAGCATATCACACGCAATGAATTC
TGTTCGCTCAGGTACACGACCCAGCGCAACTCGACCTGCGACCAGATCCTAGAGCGGAACAGCCTAACGCTGGAG
AAATTCCTCCACATGAACCCATCGCTGCATGGTAGTTGCAAGGAACTGCCTGCTGGCACGACCGTCTGCGTCAAG
ACCAAGGTCATTGTCGTAGACGGCTCGTGTTGGGGGAAGCCGGACCATATTTTCGACTACTGTTAG
Transcript >Hirsu2|5456
ATGTTGCTATCATTCGTCCGAGTCTTTGTTTTCCTAGCTACCGTTGACACAGCGCTCTCTCTCGTCATTGTCGGC
TGGCCCTCATGGACCAAAATTCCTTTCTGGCCGCCCAAGGCAGATGATTTCTTGCAACAATCAGATGTCAAGGAG
AGCTCGCCCCAAGAACCGACCCACGTGGAAGACACCCAGACGGAAGCGAATGAGCATATCACACGCAATGAATTC
TGTTCGCTCAGGTACACGACCCAGCGCAACTCGACCTGCGACCAGATCCTAGAGCGGAACAGCCTAACGCTGGAG
AAATTCCTCCACATGAACCCATCGCTGCATGGTAGTTGCAAGGAACTGCCTGCTGGCACGACCGTCTGCGTCAAG
ACCAAGGTCATTGTCGTAGACGGCTCGTGTTGGGGGAAGCCGGACCATATTTTCGACTACTGTTAG
Gene >Hirsu2|5456
ATGTTGCTATCATTCGTCCGAGTCTTTGTTTTCCTAGCTACCGTTGACACAGCGCTCTCTCTCGTCATTGTCGGC
TGGCCCTCATGGACCAAAATTCCTTTCTGGCCGCCCAAGGCAGATGATTTCTTGCAACAATCAGATGTCAAGGAG
AGCTCGCCCCAAGAACCGACCCACGTGGAAGACACCCAGACGGAAGCGAATGAGCATATCACACGCAATGAATTC
TGTTCGCTCAGGTACACGACCCAGCGCAACTCGACCTGCGACCAGATCCTAGAGCGGAACAGCCTAACGCTGGAG
AAATTCCTCCACATGGTGAGCCCCGCCTTCATGTTGACGGCGATGTGTGGTAGCAGCACGACGGGCCACGAAAAG
CTGACCGAAAGCTTACCTAGAACCCATCGCTGCATGGTAGTTGCAAGGAACTGCCTGCTGGCACGACCGTCTGCG
TCAAGACCAAGGTCATTGTCGTAGACGGCTCGTGTTGGGGGAAGCCGGACCATATTTTCGACTACTGTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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