© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5456 |
| Gene name | |
| Location | Contig_273:9274..9795 |
| Strand | + |
| Gene length (bp) | 521 |
| Transcript length (bp) | 441 |
| Coding sequence length (bp) | 441 |
| Protein length (aa) | 147 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1927 | 0.0529 | 0.8609 | 0.0789 | 0.0627 | 0.0247 | 0.3696 | 0.373 | 0.3363 | 0.0037 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 7625 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|5456 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5456 MLLSFVRVFVFLATVDTALSLVIVGWPSWTKIPFWPPKADDFLQQSDVKESSPQEPTHVEDTQTEANEHITRNEF CSLRYTTQRNSTCDQILERNSLTLEKFLHMNPSLHGSCKELPAGTTVCVKTKVIVVDGSCWGKPDHIFDYC* |
| Coding | >Hirsu2|5456 ATGTTGCTATCATTCGTCCGAGTCTTTGTTTTCCTAGCTACCGTTGACACAGCGCTCTCTCTCGTCATTGTCGGC TGGCCCTCATGGACCAAAATTCCTTTCTGGCCGCCCAAGGCAGATGATTTCTTGCAACAATCAGATGTCAAGGAG AGCTCGCCCCAAGAACCGACCCACGTGGAAGACACCCAGACGGAAGCGAATGAGCATATCACACGCAATGAATTC TGTTCGCTCAGGTACACGACCCAGCGCAACTCGACCTGCGACCAGATCCTAGAGCGGAACAGCCTAACGCTGGAG AAATTCCTCCACATGAACCCATCGCTGCATGGTAGTTGCAAGGAACTGCCTGCTGGCACGACCGTCTGCGTCAAG ACCAAGGTCATTGTCGTAGACGGCTCGTGTTGGGGGAAGCCGGACCATATTTTCGACTACTGTTAG |
| Transcript | >Hirsu2|5456 ATGTTGCTATCATTCGTCCGAGTCTTTGTTTTCCTAGCTACCGTTGACACAGCGCTCTCTCTCGTCATTGTCGGC TGGCCCTCATGGACCAAAATTCCTTTCTGGCCGCCCAAGGCAGATGATTTCTTGCAACAATCAGATGTCAAGGAG AGCTCGCCCCAAGAACCGACCCACGTGGAAGACACCCAGACGGAAGCGAATGAGCATATCACACGCAATGAATTC TGTTCGCTCAGGTACACGACCCAGCGCAACTCGACCTGCGACCAGATCCTAGAGCGGAACAGCCTAACGCTGGAG AAATTCCTCCACATGAACCCATCGCTGCATGGTAGTTGCAAGGAACTGCCTGCTGGCACGACCGTCTGCGTCAAG ACCAAGGTCATTGTCGTAGACGGCTCGTGTTGGGGGAAGCCGGACCATATTTTCGACTACTGTTAG |
| Gene | >Hirsu2|5456 ATGTTGCTATCATTCGTCCGAGTCTTTGTTTTCCTAGCTACCGTTGACACAGCGCTCTCTCTCGTCATTGTCGGC TGGCCCTCATGGACCAAAATTCCTTTCTGGCCGCCCAAGGCAGATGATTTCTTGCAACAATCAGATGTCAAGGAG AGCTCGCCCCAAGAACCGACCCACGTGGAAGACACCCAGACGGAAGCGAATGAGCATATCACACGCAATGAATTC TGTTCGCTCAGGTACACGACCCAGCGCAACTCGACCTGCGACCAGATCCTAGAGCGGAACAGCCTAACGCTGGAG AAATTCCTCCACATGGTGAGCCCCGCCTTCATGTTGACGGCGATGTGTGGTAGCAGCACGACGGGCCACGAAAAG CTGACCGAAAGCTTACCTAGAACCCATCGCTGCATGGTAGTTGCAAGGAACTGCCTGCTGGCACGACCGTCTGCG TCAAGACCAAGGTCATTGTCGTAGACGGCTCGTGTTGGGGGAAGCCGGACCATATTTTCGACTACTGTTAG |