© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|5451 |
| Gene name | |
| Location | Contig_2729:159..591 |
| Strand | + |
| Gene length (bp) | 432 |
| Transcript length (bp) | 213 |
| Coding sequence length (bp) | 213 |
| Protein length (aa) | 71 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02238 | COX7a | Cytochrome c oxidase subunit VII | 5.2E-21 | 8 | 62 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 36 | 58 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5451 MGLVDAKNKVPEHQRFYQQAYKAHTRLWKIGPRSRWYMAPYLLVLWGGFGATLYAAGRKITGHNTWFSQG* |
| Coding | >Hirsu2|5451 ATGGGCCTCGTCGACGCCAAAAACAAGGTTCCCGAGCACCAGCGCTTCTATCAACAAGCGTACAAAGCTCACACT CGTCTCTGGAAGATCGGCCCACGGTCTCGCTGGTACATGGCGCCCTATTTGCTTGTTCTGTGGGGCGGATTTGGA GCTACCTTGTATGCTGCGGGTCGGAAGATTACCGGTCACAATACCTGGTTTAGCCAGGGCTAA |
| Transcript | >Hirsu2|5451 ATGGGCCTCGTCGACGCCAAAAACAAGGTTCCCGAGCACCAGCGCTTCTATCAACAAGCGTACAAAGCTCACACT CGTCTCTGGAAGATCGGCCCACGGTCTCGCTGGTACATGGCGCCCTATTTGCTTGTTCTGTGGGGCGGATTTGGA GCTACCTTGTATGCTGCGGGTCGGAAGATTACCGGTCACAATACCTGGTTTAGCCAGGGCTAA |
| Gene | >Hirsu2|5451 ATGGGGTAAGCCTTTCACGTTTCTGCTCCACATACTACACCCACCATGCTCCGGGTACTGCCATATTGGCTCGGA GATAGTCGTAGTACGCAGCCGCTAACTCCATAGCCAGCCTCGTCGACGCCAAAAACAAGGTTCCCGAGCACCAGC GCTTCTATCAACAAGCGTACAAAGCTCACACTCGTCTCTGGAAGATCGTGCGACCGACTTGCCTGAATATTGAAC ATCTTCATAACCATCACACTGACGTGCACCAGGGCCCACGGTCTCGCTGGTACATGGCGCCCTATTTGCTTGTTC TGTGGGGCGGATTTGGAGGTGTGCTATCGACTCCTGACCTACGCATCGAAACTTATCTGACGAACTCCAGCTACC TTGTATGCTGCGGGTCGGAAGATTACCGGTCACAATACCTGGTTTAGCCAGGGCTAA |