Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5449
Gene name
LocationContig_2728:201..741
Strand-
Gene length (bp)540
Transcript length (bp)540
Coding sequence length (bp)540
Protein length (aa) 180

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05699 Dimer_Tnp_hAT hAT family C-terminal dimerisation region 1.4E-16 56 130

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P03010|TRAC9_MAIZE Putative AC9 transposase OS=Zea mays PE=4 SV=1 26 132 1.0E-06
sp|P08770|TRA1_MAIZE Putative AC transposase OS=Zea mays PE=2 SV=2 26 132 4.0E-06

GO

GO Term Description Terminal node
GO:0046983 protein dimerization activity Yes
GO:0003674 molecular_function No
GO:0005488 binding No
GO:0005515 protein binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 52 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5449
MLDISMEDRDEPAAKRQRTQYYSPFERYKDEARIRPCEENDTDKAEDEYARWQKDLLPTDSDIRDPREYWHAQRF
KYPRLSRMAMDFMTVQAMSAECERLFSAAGRMVTPLRSRLEASTIAICQGLRSWLQAGIVEEVDPILLNKADEAV
TGQPVEEKAVREWLRGLPMQMREDEAGWE*
Coding >Hirsu2|5449
ATGTTGGACATCTCTATGGAGGATCGTGACGAACCAGCCGCGAAGCGTCAACGGACACAGTACTATTCTCCGTTT
GAACGATACAAGGATGAAGCCCGGATACGTCCTTGCGAAGAAAACGACACTGATAAGGCAGAAGACGAGTATGCT
AGGTGGCAGAAGGACCTGTTACCTACGGATAGCGACATTCGTGATCCGCGTGAGTATTGGCATGCGCAGCGGTTC
AAATACCCCAGGCTTTCGCGAATGGCCATGGACTTCATGACGGTCCAGGCGATGAGCGCAGAGTGCGAAAGGCTA
TTCTCGGCGGCAGGTCGCATGGTGACGCCTCTTCGGAGTCGGCTGGAGGCAAGCACGATTGCCATCTGCCAGGGG
CTGCGGTCATGGTTGCAGGCGGGTATTGTGGAGGAGGTTGATCCAATACTGTTGAACAAGGCGGATGAAGCAGTG
ACTGGGCAGCCAGTCGAGGAGAAGGCAGTCAGAGAATGGCTTCGAGGTTTGCCAATGCAGATGCGGGAGGACGAG
GCAGGGTGGGAGTAG
Transcript >Hirsu2|5449
ATGTTGGACATCTCTATGGAGGATCGTGACGAACCAGCCGCGAAGCGTCAACGGACACAGTACTATTCTCCGTTT
GAACGATACAAGGATGAAGCCCGGATACGTCCTTGCGAAGAAAACGACACTGATAAGGCAGAAGACGAGTATGCT
AGGTGGCAGAAGGACCTGTTACCTACGGATAGCGACATTCGTGATCCGCGTGAGTATTGGCATGCGCAGCGGTTC
AAATACCCCAGGCTTTCGCGAATGGCCATGGACTTCATGACGGTCCAGGCGATGAGCGCAGAGTGCGAAAGGCTA
TTCTCGGCGGCAGGTCGCATGGTGACGCCTCTTCGGAGTCGGCTGGAGGCAAGCACGATTGCCATCTGCCAGGGG
CTGCGGTCATGGTTGCAGGCGGGTATTGTGGAGGAGGTTGATCCAATACTGTTGAACAAGGCGGATGAAGCAGTG
ACTGGGCAGCCAGTCGAGGAGAAGGCAGTCAGAGAATGGCTTCGAGGTTTGCCAATGCAGATGCGGGAGGACGAG
GCAGGGTGGGAGTAG
Gene >Hirsu2|5449
ATGTTGGACATCTCTATGGAGGATCGTGACGAACCAGCCGCGAAGCGTCAACGGACACAGTACTATTCTCCGTTT
GAACGATACAAGGATGAAGCCCGGATACGTCCTTGCGAAGAAAACGACACTGATAAGGCAGAAGACGAGTATGCT
AGGTGGCAGAAGGACCTGTTACCTACGGATAGCGACATTCGTGATCCGCGTGAGTATTGGCATGCGCAGCGGTTC
AAATACCCCAGGCTTTCGCGAATGGCCATGGACTTCATGACGGTCCAGGCGATGAGCGCAGAGTGCGAAAGGCTA
TTCTCGGCGGCAGGTCGCATGGTGACGCCTCTTCGGAGTCGGCTGGAGGCAAGCACGATTGCCATCTGCCAGGGG
CTGCGGTCATGGTTGCAGGCGGGTATTGTGGAGGAGGTTGATCCAATACTGTTGAACAAGGCGGATGAAGCAGTG
ACTGGGCAGCCAGTCGAGGAGAAGGCAGTCAGAGAATGGCTTCGAGGTTTGCCAATGCAGATGCGGGAGGACGAG
GCAGGGTGGGAGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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