© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5444 |
| Gene name | |
| Location | Contig_2722:264..1366 |
| Strand | - |
| Gene length (bp) | 1102 |
| Transcript length (bp) | 864 |
| Coding sequence length (bp) | 864 |
| Protein length (aa) | 288 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01266 | DAO | FAD dependent oxidoreductase | 5.0E-08 | 191 | 220 |
| PF13450 | NAD_binding_8 | NAD(P)-binding Rossmann-like domain | 1.9E-05 | 194 | 220 |
| PF01494 | FAD_binding_3 | FAD binding domain | 6.0E-05 | 189 | 248 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O65727|ERG11_BRANA | Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1 | 177 | 279 | 1.0E-21 |
| sp|O13306|ERG1_CANGA | Squalene monooxygenase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG1 PE=3 SV=2 | 182 | 275 | 2.0E-21 |
| sp|Q14534|ERG1_HUMAN | Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=1 SV=3 | 137 | 285 | 5.0E-21 |
| sp|O65404|ERG11_ARATH | Squalene epoxidase 5 OS=Arabidopsis thaliana GN=SQE5 PE=2 SV=2 | 176 | 281 | 1.0E-20 |
| sp|O65402|ERG12_ARATH | Squalene epoxidase 6 OS=Arabidopsis thaliana GN=SQE6 PE=2 SV=1 | 173 | 286 | 1.0E-20 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O65727|ERG11_BRANA | Squalene monooxygenase 1,1 OS=Brassica napus GN=SQP1,1 PE=2 SV=1 | 177 | 279 | 1.0E-21 |
| sp|O13306|ERG1_CANGA | Squalene monooxygenase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ERG1 PE=3 SV=2 | 182 | 275 | 2.0E-21 |
| sp|Q14534|ERG1_HUMAN | Squalene monooxygenase OS=Homo sapiens GN=SQLE PE=1 SV=3 | 137 | 285 | 5.0E-21 |
| sp|O65404|ERG11_ARATH | Squalene epoxidase 5 OS=Arabidopsis thaliana GN=SQE5 PE=2 SV=2 | 176 | 281 | 1.0E-20 |
| sp|O65402|ERG12_ARATH | Squalene epoxidase 6 OS=Arabidopsis thaliana GN=SQE6 PE=2 SV=1 | 173 | 286 | 1.0E-20 |
| sp|Q92206|ERG1_CANAL | Squalene monooxygenase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ERG1 PE=3 SV=1 | 189 | 279 | 2.0E-20 |
| sp|P52019|ERG1_MOUSE | Squalene monooxygenase OS=Mus musculus GN=Sqle PE=2 SV=1 | 137 | 285 | 3.0E-20 |
| sp|P32476|ERG1_YEAST | Squalene monooxygenase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG1 PE=1 SV=2 | 185 | 275 | 1.0E-19 |
| sp|Q75F69|ERG1_ASHGO | Squalene monooxygenase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ERG1 PE=3 SV=1 | 191 | 279 | 6.0E-19 |
| sp|O48651|ERG1_PANGI | Squalene monooxygenase OS=Panax ginseng PE=2 SV=1 | 190 | 275 | 8.0E-19 |
| sp|Q9C1W3|ERG1_SCHPO | Probable squalene monooxygenase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg1 PE=3 SV=1 | 201 | 281 | 9.0E-19 |
| sp|O81000|ERG15_ARATH | Squalene epoxidase 2, mitochondrial OS=Arabidopsis thaliana GN=SQE2 PE=1 SV=1 | 190 | 283 | 4.0E-18 |
| sp|O65726|ERG12_BRANA | Squalene monooxygenase 1,2 OS=Brassica napus GN=SQP1,2 PE=2 SV=1 | 191 | 280 | 5.0E-18 |
| sp|P52020|ERG1_RAT | Squalene monooxygenase OS=Rattus norvegicus GN=Sqle PE=2 SV=1 | 137 | 285 | 5.0E-18 |
| sp|Q9SM02|ERG14_ARATH | Squalene epoxidase 1 OS=Arabidopsis thaliana GN=SQE1 PE=1 SV=1 | 171 | 275 | 2.0E-17 |
| sp|O65403|ERG13_ARATH | Squalene epoxidase 4 OS=Arabidopsis thaliana GN=SQE4 PE=2 SV=1 | 177 | 279 | 2.0E-17 |
| sp|Q8VYH2|ERG16_ARATH | Squalene epoxidase 3 OS=Arabidopsis thaliana GN=SQE3 PE=1 SV=1 | 204 | 283 | 2.0E-13 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0071949 | FAD binding | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0043168 | anion binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0050660 | flavin adenine dinucleotide binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 61 | 83 | 22 |
| 2 | 108 | 127 | 19 |
| 3 | 192 | 209 | 17 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5444 MCAPAIGRRLATSGAGPGRGADLAMSSAVARLRPSAIPLPGPSWPELSLLHRCAARHSLEIGIGISFFFLFGFEC SELLAFQAGASCQLPPLAAWPGLPFSSRLTTLHTRHRLVVFIALLVLVFFVLSPRKREAVQPLPPAFLSRSPRID PSSSLAMAAKAKSNAGAGADAPLSSAQASARTRRDTYHEADVVVVGAGIFGCAIAFALANQGRSVLLLERWMKEP DRIVGELLQPGGVAALKKLGLGHCLDGIDAIPCLGYNVLYHGQESLVPYPAVDDDGQVRSPC* |
| Coding | >Hirsu2|5444 ATGTGCGCGCCCGCCATTGGCCGCCGCCTCGCCACAAGTGGCGCCGGCCCGGGTCGAGGCGCAGACCTGGCGATG TCGTCGGCCGTCGCTCGCCTTCGCCCCTCTGCCATCCCACTCCCGGGTCCATCGTGGCCTGAGTTGAGCCTCCTG CATCGCTGCGCTGCGAGACATTCGCTCGAAATCGGGATTGGCATCTCTTTTTTTTTTTTGTTTGGCTTTGAGTGC TCTGAACTTCTGGCATTCCAGGCTGGAGCGTCTTGCCAGTTGCCACCCTTGGCTGCCTGGCCTGGCCTCCCTTTT TCGTCTCGATTGACGACGCTTCACACTCGACATCGCCTCGTCGTCTTCATCGCCCTCCTCGTCCTCGTCTTCTTC GTCCTCTCCCCTCGGAAAAGAGAAGCAGTCCAGCCTTTGCCACCCGCCTTTCTCTCTCGTTCGCCTCGGATCGAT CCGTCATCCTCCCTCGCCATGGCAGCCAAGGCCAAGAGTAACGCTGGTGCCGGCGCCGACGCGCCTCTCTCGTCG GCCCAGGCTTCGGCTCGCACCCGCCGCGACACATACCACGAGGCCGACGTCGTCGTCGTCGGCGCCGGCATCTTC GGCTGCGCCATCGCCTTCGCCCTCGCCAACCAGGGCCGCTCCGTCCTGCTGCTGGAGCGGTGGATGAAGGAGCCG GACCGGATCGTGGGCGAGCTGCTGCAGCCCGGCGGCGTGGCGGCGCTCAAGAAGCTGGGCCTGGGCCACTGCCTC GACGGCATCGACGCCATCCCCTGCCTCGGCTACAACGTCCTCTACCACGGCCAGGAGTCGCTCGTGCCGTACCCG GCCGTCGACGACGACGGCCAGGTGCGCTCCCCCTGCTGA |
| Transcript | >Hirsu2|5444 ATGTGCGCGCCCGCCATTGGCCGCCGCCTCGCCACAAGTGGCGCCGGCCCGGGTCGAGGCGCAGACCTGGCGATG TCGTCGGCCGTCGCTCGCCTTCGCCCCTCTGCCATCCCACTCCCGGGTCCATCGTGGCCTGAGTTGAGCCTCCTG CATCGCTGCGCTGCGAGACATTCGCTCGAAATCGGGATTGGCATCTCTTTTTTTTTTTTGTTTGGCTTTGAGTGC TCTGAACTTCTGGCATTCCAGGCTGGAGCGTCTTGCCAGTTGCCACCCTTGGCTGCCTGGCCTGGCCTCCCTTTT TCGTCTCGATTGACGACGCTTCACACTCGACATCGCCTCGTCGTCTTCATCGCCCTCCTCGTCCTCGTCTTCTTC GTCCTCTCCCCTCGGAAAAGAGAAGCAGTCCAGCCTTTGCCACCCGCCTTTCTCTCTCGTTCGCCTCGGATCGAT CCGTCATCCTCCCTCGCCATGGCAGCCAAGGCCAAGAGTAACGCTGGTGCCGGCGCCGACGCGCCTCTCTCGTCG GCCCAGGCTTCGGCTCGCACCCGCCGCGACACATACCACGAGGCCGACGTCGTCGTCGTCGGCGCCGGCATCTTC GGCTGCGCCATCGCCTTCGCCCTCGCCAACCAGGGCCGCTCCGTCCTGCTGCTGGAGCGGTGGATGAAGGAGCCG GACCGGATCGTGGGCGAGCTGCTGCAGCCCGGCGGCGTGGCGGCGCTCAAGAAGCTGGGCCTGGGCCACTGCCTC GACGGCATCGACGCCATCCCCTGCCTCGGCTACAACGTCCTCTACCACGGCCAGGAGTCGCTCGTGCCGTACCCG GCCGTCGACGACGACGGCCAGGTGCGCTCCCCCTGCTGA |
| Gene | >Hirsu2|5444 ATGTGCGCGCCCGCCATTGGCCGCCGCCTCGCCACAAGTGGCGCCGGCCCGGGTCGAGGCGCAGACCTGGCGATG TCGTCGGCCGTCGCTCGCCTTCGCCCCTCTGCCATCCCACTCCCGGGTCCATCGTGGCCTGAGTTGAGCCTCCTG CATCGCTGCGCTGCGAGACATTCGCTCGAAATCGGGATTGGCATCTCTTTTTTTTTTTTGTTTGGCTTTGAGTGC TCTGAACTTCTGGCATTCCAGGCTGGAGCGTCTTGCCAGTTGCCACCCTTGGCTGCCTGGCCTGGCCTCCCTTTT TCGTCTCGATTGACGACGCTTCACACTCGACATCGCCTCGTCGTCTTCATCGCCCTCCTCGTCCTCGTCTTCTTC GTCCTCTCCCCTCGGAAAAGAGAAGCAGTCCAGCCTTTGCCACCCGCCTTTCTCTCTCGTTCGCCTCGGATCGAT CCGTCATCCTCCCTCGCCATGGCAGCCAAGGCCAAGAGTAACGCTGGTGCCGGCGCCGACGCGCCTCTCTCGTCG GCCCAGGCTTCGGCTCGCACCCGCCGCGACACATACCACGAGGCCGACGTCGTCGTCGTCGGCGCCGGCATCTTC GGCTGCGCCATCGCCTTCGCCCTCGCCAACCAGGGCCGCTCCGTCCTGCTGCTGGAGCGGTGGATGAAGGAGCCG GACCGGATCGTGGGCGAGCTGCTGCAGCCCGGCGGCGTGGCGGCGCTCAAGAAGCTGGGCCTGGGCCACTGCCTC GACGGCATCGACGCCATCCCCTGCCTCGGCTACAACGTCCTCTACCACGGCCAGGAGTCGCTCGTGCCGTACCCG GCCGTCGACGACGACGGCCAGGTGCGCTCCCCCTGGTCCGGCGGCTCCGGCGCCGACGCCGACGCCAAGCGGCCC CAGGGCCGGAGCTTCCACCACGGCCGCTTCGTCATGCAGCTGCGCCGGGCCTGCATGGCCCACGCCAACATCAGC CTGGTCGAGACCGAGGCCGTCAAGACGATCCGCGGCGAGCACTCGGCCCAGGTGCTGGGCGTCGAGGCGCGCACC GCCGACGCCGACACGGGCGCCAAGCGCAGCGACTACTACTTCGGCCAGCTGA |