Protein ID | Hirsu2|5438 |
Gene name | |
Location | Contig_272:18796..20691 |
Strand | - |
Gene length (bp) | 1895 |
Transcript length (bp) | 1521 |
Coding sequence length (bp) | 1521 |
Protein length (aa) | 507 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01522 | Polysacc_deac_1 | Polysaccharide deacetylase | 3.0E-18 | 119 | 261 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|D4AM78|CDA_ARTBC | Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 | 83 | 349 | 5.0E-29 |
sp|D4B5F9|PGDA_ARTBC | Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 | 110 | 348 | 3.0E-26 |
sp|P83513|XY11A_PSEXY | Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 | 124 | 336 | 5.0E-09 |
sp|Q06703|CDA2_YEAST | Chitin deacetylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA2 PE=1 SV=1 | 119 | 271 | 2.0E-07 |
sp|P04676|NODB_RHILT | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. trifolii GN=nodB PE=3 SV=1 | 127 | 196 | 2.0E-06 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|D4AM78|CDA_ARTBC | Chitin deacetylase ARB_04768 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_04768 PE=3 SV=1 | 83 | 349 | 5.0E-29 |
sp|D4B5F9|PGDA_ARTBC | Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_03699 PE=1 SV=2 | 110 | 348 | 3.0E-26 |
sp|P83513|XY11A_PSEXY | Bifunctional xylanase/deacetylase OS=Pseudobutyrivibrio xylanivorans GN=xyn11A PE=1 SV=2 | 124 | 336 | 5.0E-09 |
sp|Q06703|CDA2_YEAST | Chitin deacetylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDA2 PE=1 SV=1 | 119 | 271 | 2.0E-07 |
sp|P04676|NODB_RHILT | Chitooligosaccharide deacetylase OS=Rhizobium leguminosarum bv. trifolii GN=nodB PE=3 SV=1 | 127 | 196 | 2.0E-06 |
sp|P50355|NODB_RHISN | Chitooligosaccharide deacetylase OS=Rhizobium sp. (strain NGR234) GN=nodB PE=3 SV=2 | 127 | 196 | 2.0E-06 |
sp|P02963|NODB_RHIME | Chitooligosaccharide deacetylase OS=Rhizobium meliloti (strain 1021) GN=nodB PE=3 SV=3 | 125 | 196 | 3.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | Yes |
GO:0005975 | carbohydrate metabolic process | Yes |
GO:0071704 | organic substance metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0003824 | catalytic activity | No |
GO:0044238 | primary metabolic process | No |
GO:0008150 | biological_process | No |
GO:0016787 | hydrolase activity | No |
GO:0003674 | molecular_function | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1195 | 0.0533 | 0.9577 | 0.1058 | 0.089 | 0.0595 | 0.2295 | 0.189 | 0.283 | 0.0056 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 24 | 0.572343 |
CAZyme category | E-value | Start | End |
---|---|---|---|
CE4 | 3.2E-21 | 121 | 265 |
Orthofinder run ID | 4 |
Orthogroup | 88 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|5438 MKPTPGSRSLASLLVLGLARTIGGIALQTAREPAIEEVWCGWEKFLFILHKPRSCPPNHCCSGNGTCGTTGQHCG GGGCQVGLSDSCDAFYGPAGENTTDIPRPRIKGPVPYGNMIDKCSKPGLMALTFDDAPSKYTEELLNLLDELKAN VTFFVSGNSRSQGHVDDELKAWPGLLRRMHAAGHQIASSTWTHRDLDGTFGRWFLTYEPDRGLRARIRNSEVTFN EMVMRNVFGWFPAYIRPPGLGCGGRCQGFLRQRGYHVISTNFDMHDDKYDSAARIGEAKKKFSSDISKAADKNSY IVRLRDGYRQTVVNLTAHVVHEARARGYRLVTVGECVGDPKRYWYRPTKEPDMNRSAPAPLLAARAPVVEEELPP WPPFSIWDIVNKTRPKSPGGGPWLDPAQRPRCGPKYGLRCMGSKEAPCCSYWGICGSEPEYCGTGCRESYGTCDV TSGMSLENSTNGLCGVEFNAGCSADAKRPCCSEAGMCGSGPTSCGRGCQADYGDCM* |
Coding | >Hirsu2|5438 ATGAAGCCGACGCCGGGCAGCAGAAGCCTCGCCAGCCTCTTGGTCCTCGGCCTCGCTCGCACAATAGGCGGAATC GCACTGCAGACGGCACGCGAGCCAGCCATCGAGGAAGTCTGGTGCGGCTGGGAAAAATTCCTCTTCATCTTGCAC AAACCCCGGAGCTGTCCACCCAACCATTGCTGTTCAGGGAATGGAACCTGCGGCACGACAGGCCAACACTGCGGT GGCGGGGGGTGCCAGGTAGGCCTCAGCGACTCGTGCGATGCCTTCTACGGCCCCGCGGGCGAGAATACCACAGAC ATCCCGCGGCCACGGATCAAGGGACCTGTTCCTTACGGCAACATGATAGATAAATGCTCGAAGCCGGGCCTCATG GCCCTGACCTTCGACGACGCACCGAGCAAATACACGGAAGAGCTGCTGAACCTCCTGGACGAGCTCAAGGCCAAC GTCACCTTCTTCGTCTCGGGCAACAGCCGGTCCCAGGGCCATGTCGACGACGAGCTGAAGGCCTGGCCCGGCCTC CTGCGGCGCATGCACGCGGCCGGGCACCAGATTGCGAGCAGCACCTGGACCCACCGTGACCTGGACGGGACCTTC GGCCGGTGGTTTCTGACGTACGAGCCGGACCGGGGGCTCCGGGCGCGGATCCGGAACTCGGAGGTCACGTTCAAC GAGATGGTCATGCGGAACGTCTTCGGCTGGTTCCCGGCCTACATCCGACCGCCGGGCCTGGGCTGCGGGGGGCGG TGCCAGGGCTTCTTGCGCCAGCGGGGCTACCACGTCATCTCGACCAACTTCGACATGCACGACGACAAGTACGAC AGCGCGGCCCGGATCGGAGAGGCCAAGAAGAAGTTCAGCAGCGACATCTCGAAGGCGGCCGACAAGAACAGCTAC ATCGTGCGGCTCCGCGACGGGTACCGCCAGACGGTCGTCAACCTCACGGCCCACGTGGTGCACGAGGCGAGGGCG CGCGGCTACCGGCTCGTGACGGTGGGCGAGTGCGTCGGCGACCCCAAGCGGTACTGGTACCGGCCGACCAAGGAG CCGGACATGAACCGATCGGCGCCGGCGCCGCTGCTGGCCGCCCGGGCCCCCGTCGTCGAGGAGGAGCTGCCGCCG TGGCCCCCCTTTTCGATCTGGGACATTGTGAACAAGACGAGGCCGAAGTCGCCCGGGGGCGGGCCCTGGCTCGAC CCTGCTCAGCGGCCACGCTGCGGCCCAAAATACGGACTACGGTGCATGGGCTCGAAAGAGGCGCCCTGCTGCTCC TACTGGGGCATCTGCGGCTCGGAGCCCGAGTACTGCGGCACCGGGTGCAGAGAGTCGTACGGCACGTGCGACGTC ACGTCGGGCATGAGCCTGGAGAACTCGACCAACGGGCTGTGCGGCGTCGAGTTCAACGCCGGCTGCTCGGCCGAC GCGAAGAGGCCATGCTGCTCGGAGGCCGGAATGTGCGGTTCCGGGCCAACCTCGTGCGGCCGCGGCTGCCAAGCG GACTACGGGGACTGCATGTAA |
Transcript | >Hirsu2|5438 ATGAAGCCGACGCCGGGCAGCAGAAGCCTCGCCAGCCTCTTGGTCCTCGGCCTCGCTCGCACAATAGGCGGAATC GCACTGCAGACGGCACGCGAGCCAGCCATCGAGGAAGTCTGGTGCGGCTGGGAAAAATTCCTCTTCATCTTGCAC AAACCCCGGAGCTGTCCACCCAACCATTGCTGTTCAGGGAATGGAACCTGCGGCACGACAGGCCAACACTGCGGT GGCGGGGGGTGCCAGGTAGGCCTCAGCGACTCGTGCGATGCCTTCTACGGCCCCGCGGGCGAGAATACCACAGAC ATCCCGCGGCCACGGATCAAGGGACCTGTTCCTTACGGCAACATGATAGATAAATGCTCGAAGCCGGGCCTCATG GCCCTGACCTTCGACGACGCACCGAGCAAATACACGGAAGAGCTGCTGAACCTCCTGGACGAGCTCAAGGCCAAC GTCACCTTCTTCGTCTCGGGCAACAGCCGGTCCCAGGGCCATGTCGACGACGAGCTGAAGGCCTGGCCCGGCCTC CTGCGGCGCATGCACGCGGCCGGGCACCAGATTGCGAGCAGCACCTGGACCCACCGTGACCTGGACGGGACCTTC GGCCGGTGGTTTCTGACGTACGAGCCGGACCGGGGGCTCCGGGCGCGGATCCGGAACTCGGAGGTCACGTTCAAC GAGATGGTCATGCGGAACGTCTTCGGCTGGTTCCCGGCCTACATCCGACCGCCGGGCCTGGGCTGCGGGGGGCGG TGCCAGGGCTTCTTGCGCCAGCGGGGCTACCACGTCATCTCGACCAACTTCGACATGCACGACGACAAGTACGAC AGCGCGGCCCGGATCGGAGAGGCCAAGAAGAAGTTCAGCAGCGACATCTCGAAGGCGGCCGACAAGAACAGCTAC ATCGTGCGGCTCCGCGACGGGTACCGCCAGACGGTCGTCAACCTCACGGCCCACGTGGTGCACGAGGCGAGGGCG CGCGGCTACCGGCTCGTGACGGTGGGCGAGTGCGTCGGCGACCCCAAGCGGTACTGGTACCGGCCGACCAAGGAG CCGGACATGAACCGATCGGCGCCGGCGCCGCTGCTGGCCGCCCGGGCCCCCGTCGTCGAGGAGGAGCTGCCGCCG TGGCCCCCCTTTTCGATCTGGGACATTGTGAACAAGACGAGGCCGAAGTCGCCCGGGGGCGGGCCCTGGCTCGAC CCTGCTCAGCGGCCACGCTGCGGCCCAAAATACGGACTACGGTGCATGGGCTCGAAAGAGGCGCCCTGCTGCTCC TACTGGGGCATCTGCGGCTCGGAGCCCGAGTACTGCGGCACCGGGTGCAGAGAGTCGTACGGCACGTGCGACGTC ACGTCGGGCATGAGCCTGGAGAACTCGACCAACGGGCTGTGCGGCGTCGAGTTCAACGCCGGCTGCTCGGCCGAC GCGAAGAGGCCATGCTGCTCGGAGGCCGGAATGTGCGGTTCCGGGCCAACCTCGTGCGGCCGCGGCTGCCAAGCG GACTACGGGGACTGCATGTAA |
Gene | >Hirsu2|5438 ATGAAGCCGACGCCGGGCAGCAGAAGCCTCGCCAGCCTCTTGGTCCTCGGCCTCGCTCGCACAATAGGCGGAATC GCACTGCAGACGGCACGCGAGCCAGCCATCGAGGAAGTCTGGTGCGGCTGGGAAAAATTCCTCTTCATCTTGCAC AAACCCCGGAGCTGTCCACCCAACCATTGCTGTTCAGGGAATGGAACCTGCGGCACGACAGGCCAACACTGCGGT GGCGGGGGGTGCCAGGTAGGCCTCAGCGACTCGTGCGATGCCTTGTAAGTAGCGTTGTCTGGTGTCGCGTTCCAG TCAGATGACTGACGGTCCGTTGGACTTCCAGCTACGGCCCCGCGGGCGAGAATACCACAGACATCCCGCGGCCAC GGATCAAGGGACCTGTTCCTTACGGTACGCACCTCGCCGAGGCCCGGCACGCGGATCGGCGTCCAGGGCCGCAAG GGCGACTGCCCTCTGCTTAGACTCGGCGGCTGACACCAGAATACACAGGCAACATGATAGATAAATGCTCGAAGC CGGGCCTCATGGCCCTGACCTTCGACGACGCACCGAGCAAATACACGGAAGAGCTGCTGAACCTCCTGGACGAGC TCAAGGCCAACGTCACCTTCTTCGTCTCGGGCAACAGCCGGTCCCAGGGCCATGTCGACGACGAGCTGAAGGCCT GGCCCGGCCTCCTGCGGCGCATGCACGCGGCCGGGCACCAGATTGCGAGCAGCACCTGGACCCACCGTGACCTGG ACGGGACCTTCGGCCGGTGGTTTCTGACGTACGAGCCGGACCGGGGGCTCCGGGCGCGGATCCGGAACTCGGAGG TCACGTTCAACGAGATGGTCATGCGGAACGTCTTCGGCTGGTTCCCGGCCTACATCCGACCGCCGGGCCTGGGCT GCGGGGGGCGGTGCCAGGGCTTCTTGCGCCAGCGGGGCTACCACGTCATCTCGACCAACTTCGACATGCACGACG ACAAGTACGACAGCGCGGCCCGGATCGGAGAGGCCAAGAAGAAGTTCAGCAGCGACATCTCGAAGGCGGCCGACA AGAACAGCTACATCGTGCGGCTCCGCGACGGGTACCGCCAGACGGTCGTCAACCTCACGGCCCACGTGGTGCACG AGGCGAGGGCGCGCGGCTACCGGCTCGTGACGGTGGGCGAGTGCGTCGGCGACCCCAAGCGGTACTGGTACCGGC CGACCAAGGAGCCGGACATGAACCGATCGGCGCCGGCGCCGCTGCTGGCCGCCCGGGCCCCCGTCGTCGAGGAGG AGCTGCCGCCGTGGCCCCCCTTTTCGATCTGGGACATTGTGAACAAGACGAGGCCGAAGTCGCCCGGGGGCGGGC CCTGGCTCGACCCTGCTCAGCGGCCACGCTGCGGCCCAAAATACGGACTACGGTGCATGGGCTCGAAAGAGGCGC CCTGCTGCTCCTACTGGGGCATCTGGTAAGCAGGCCATCGCCCCCTCCCCTTGAAATCGTGGAACGGGACGCCGT CTTCTTCGGAACCCTCTTCCCAGCCGCAGACGTGCCCGACTCGCGCGGACGAGCCCGCTGACGCTTCCTCTCACG CACGCACAAGCGGCTCGGAGCCCGAGTACTGCGGCACCGGGTGCAGAGAGTCGTACGGCACGTGCGACGTCACGT CGGGCATGAGCCTGGAGAACTCGACCAACGGGCTGTGCGGCGTCGAGTTCAACGCCGGCTGCTCGGCCGACGCGA AGAGGCCATGCTGCTCGGAGGCCGGAATGTGGTAAGTCGCACCAGACAGCACCAAGACTCGCCGACGCCTGCTGA CTCGCCGACCTCTCTCTCCCTCTCTCTCCGCCAGCGGTTCCGGGCCAACCTCGTGCGGCCGCGGCTGCCAAGCGG ACTACGGGGACTGCATGTAA |