Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|5410
Gene name
Location	Contig_2700:117..1498
Strand	-
Gene length (bp)	1381
Transcript length (bp)	1248
Coding sequence length (bp)	1248
Protein length (aa)	416

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02002	TFIIE_alpha	TFIIE alpha subunit	9.1E-15	7	104

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9P3W1\|T2EA_SCHPO	Transcription initiation factor IIE subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfa1 PE=1 SV=3	2	329	2.0E-43
sp\|P36100\|T2EA_YEAST	Transcription initiation factor IIE subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFA1 PE=1 SV=1	2	286	1.0E-36
sp\|Q557M8\|T2EA_DICDI	General transcription factor IIE subunit 1 OS=Dictyostelium discoideum GN=gtf2e1-1 PE=3 SV=1	7	226	7.0E-15
sp\|P29083\|T2EA_HUMAN	General transcription factor IIE subunit 1 OS=Homo sapiens GN=GTF2E1 PE=1 SV=2	7	278	2.0E-13
sp\|Q5R8H5\|T2EA_PONAB	General transcription factor IIE subunit 1 OS=Pongo abelii GN=GTF2E1 PE=2 SV=1	7	278	5.0E-13

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q9P3W1\|T2EA_SCHPO	Transcription initiation factor IIE subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tfa1 PE=1 SV=3	2	329	2.0E-43
sp\|P36100\|T2EA_YEAST	Transcription initiation factor IIE subunit alpha OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TFA1 PE=1 SV=1	2	286	1.0E-36
sp\|Q557M8\|T2EA_DICDI	General transcription factor IIE subunit 1 OS=Dictyostelium discoideum GN=gtf2e1-1 PE=3 SV=1	7	226	7.0E-15
sp\|P29083\|T2EA_HUMAN	General transcription factor IIE subunit 1 OS=Homo sapiens GN=GTF2E1 PE=1 SV=2	7	278	2.0E-13
sp\|Q5R8H5\|T2EA_PONAB	General transcription factor IIE subunit 1 OS=Pongo abelii GN=GTF2E1 PE=2 SV=1	7	278	5.0E-13
sp\|Q9D0D5\|T2EA_MOUSE	General transcription factor IIE subunit 1 OS=Mus musculus GN=Gtf2e1 PE=1 SV=1	7	186	4.0E-12
sp\|A6QLI8\|T2EA_BOVIN	General transcription factor IIE subunit 1 OS=Bos taurus GN=GTF2E1 PE=2 SV=1	7	278	4.0E-11

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 27	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|5410 MELAVTLIKSVMRAFYATRDILVVDALMLHEALRDDDLAYLMAINTKDLHKICGKLREDRFLSVHTRQEMRPGNP RPSNRTWYYINYRHTIDAIKWRVYTIDKEVQGSSIPANEKKEYFCTFCKAEWTAMEVLDNVGPSGFVCHRCHHTL TFEAERNSGGHEQSTRLNDQFKFISELLPKIDAVHIPECDFDRALARARPVIRDVTHQRAATIPVESGTSRPMAV KGLSNSGPQSIAVNISATEGPSAAEREAEKARKEHIARQNSLPSWMSNSTVTGESFSGITDTNMSAGIKGEVGGI SIIKPVDLNTSAQIDDIFEKLKAEQAAENSQQERNPDDEELYSGEDGEDQFEDVPANDMSIFQAADVPRGAQVDS PPGIDERPAKRVKLKTGLLDRNVLGERDEENDEELEFENV*
Coding	>Hirsu2\|5410 ATGGAACTTGCCGTCACACTTATCAAGTCTGTTATGCGAGCTTTCTATGCCACGCGTGATATACTCGTCGTCGAC GCCCTGATGTTACATGAAGCTCTCCGCGATGATGACCTAGCTTATCTTATGGCAATCAATACCAAGGACCTTCAT AAAATTTGTGGTAAACTCAGGGAGGATCGTTTTCTTTCGGTTCACACGAGGCAAGAGATGCGCCCCGGAAATCCC AGGCCAAGCAATCGAACATGGTATTATATCAACTATCGCCACACTATTGATGCTATCAAATGGCGAGTCTACACG ATCGACAAAGAGGTACAGGGAAGTTCAATTCCTGCGAACGAGAAAAAAGAATATTTTTGCACTTTCTGCAAGGCC GAATGGACGGCCATGGAGGTTCTGGATAACGTCGGCCCAAGTGGCTTTGTGTGCCACCGCTGTCATCACACACTT ACCTTCGAGGCCGAACGAAACTCTGGCGGGCACGAACAATCCACTCGCCTCAACGATCAATTCAAATTCATCAGT GAACTTCTGCCAAAAATTGATGCTGTGCATATACCTGAGTGTGATTTCGACCGCGCTTTAGCCAGAGCACGTCCC GTTATTCGGGACGTCACCCACCAAAGAGCGGCTACGATTCCCGTTGAAAGTGGCACAAGCCGGCCAATGGCTGTC AAAGGCCTTAGTAACAGTGGACCACAGTCGATTGCGGTCAATATTTCTGCGACAGAGGGCCCTTCCGCGGCCGAG CGTGAAGCTGAAAAGGCTCGAAAGGAACATATCGCGCGGCAAAATTCGCTGCCGTCATGGATGTCTAATAGCACC GTCACCGGGGAATCTTTCTCTGGTATCACAGACACTAATATGAGCGCCGGCATCAAGGGCGAGGTCGGGGGTATC TCGATTATTAAACCCGTGGACCTCAACACCAGTGCGCAGATTGACGACATCTTCGAGAAGCTCAAAGCTGAACAG GCGGCTGAGAATTCACAACAAGAGAGAAATCCTGATGATGAAGAACTTTACTCCGGTGAAGACGGTGAAGATCAA TTCGAAGACGTACCAGCTAACGACATGTCAATATTCCAGGCGGCTGACGTTCCGCGAGGAGCTCAAGTCGACTCA CCCCCAGGCATTGATGAGAGGCCGGCTAAGCGGGTAAAGCTGAAAACCGGCTTGCTCGATCGAAACGTTCTGGGA GAGAGGGACGAGGAAAATGACGAGGAACTCGAGTTCGAGAATGTATAA
Transcript	>Hirsu2\|5410 ATGGAACTTGCCGTCACACTTATCAAGTCTGTTATGCGAGCTTTCTATGCCACGCGTGATATACTCGTCGTCGAC GCCCTGATGTTACATGAAGCTCTCCGCGATGATGACCTAGCTTATCTTATGGCAATCAATACCAAGGACCTTCAT AAAATTTGTGGTAAACTCAGGGAGGATCGTTTTCTTTCGGTTCACACGAGGCAAGAGATGCGCCCCGGAAATCCC AGGCCAAGCAATCGAACATGGTATTATATCAACTATCGCCACACTATTGATGCTATCAAATGGCGAGTCTACACG ATCGACAAAGAGGTACAGGGAAGTTCAATTCCTGCGAACGAGAAAAAAGAATATTTTTGCACTTTCTGCAAGGCC GAATGGACGGCCATGGAGGTTCTGGATAACGTCGGCCCAAGTGGCTTTGTGTGCCACCGCTGTCATCACACACTT ACCTTCGAGGCCGAACGAAACTCTGGCGGGCACGAACAATCCACTCGCCTCAACGATCAATTCAAATTCATCAGT GAACTTCTGCCAAAAATTGATGCTGTGCATATACCTGAGTGTGATTTCGACCGCGCTTTAGCCAGAGCACGTCCC GTTATTCGGGACGTCACCCACCAAAGAGCGGCTACGATTCCCGTTGAAAGTGGCACAAGCCGGCCAATGGCTGTC AAAGGCCTTAGTAACAGTGGACCACAGTCGATTGCGGTCAATATTTCTGCGACAGAGGGCCCTTCCGCGGCCGAG CGTGAAGCTGAAAAGGCTCGAAAGGAACATATCGCGCGGCAAAATTCGCTGCCGTCATGGATGTCTAATAGCACC GTCACCGGGGAATCTTTCTCTGGTATCACAGACACTAATATGAGCGCCGGCATCAAGGGCGAGGTCGGGGGTATC TCGATTATTAAACCCGTGGACCTCAACACCAGTGCGCAGATTGACGACATCTTCGAGAAGCTCAAAGCTGAACAG GCGGCTGAGAATTCACAACAAGAGAGAAATCCTGATGATGAAGAACTTTACTCCGGTGAAGACGGTGAAGATCAA TTCGAAGACGTACCAGCTAACGACATGTCAATATTCCAGGCGGCTGACGTTCCGCGAGGAGCTCAAGTCGACTCA CCCCCAGGCATTGATGAGAGGCCGGCTAAGCGGGTAAAGCTGAAAACCGGCTTGCTCGATCGAAACGTTCTGGGA GAGAGGGACGAGGAAAATGACGAGGAACTCGAGTTCGAGAATGTATAA
Gene	>Hirsu2\|5410 ATGGAACTTGCCGTCACACTTATCAAGTCTGTTATGCGAGCTTTCTATGCCACGCGTGATATACTCGTCGTCGAC GCCCTGATGTTACATGAAGCGTAATGTTATCAGTCCTGCTTGCAAGAACCAATCTCGATTGCGAACTAATCTTCA TTAGCTGCCAGTCTCCGCGATGATGACCTAGCTTATCTTATGGCAATCAATACCAAGGACCTTCATAAAATTTGT GGTAAACTCAGGGAGGATCGTTTTCTTTCGGTGTATGTTACGCTGAACCTGCGAGAGTTGTCCGCTTCGCTTCTT CCCTCTGTTCTGACTTGGATTTAGTCACACGAGGCAAGAGATGCGCCCCGGAAATCCCAGGCCAAGCAATCGAAC ATGGTATTATATCAACTATCGCCACACTATTGATGCTATCAAATGGCGAGTCTACACGATCGACAAAGAGGTACA GGGAAGTTCAATTCCTGCGAACGAGAAAAAAGAATATTTTTGCACTTTCTGCAAGGCCGAATGGACGGCCATGGA GGTTCTGGATAACGTCGGCCCAAGTGGCTTTGTGTGCCACCGCTGTCATCACACACTTACCTTCGAGGCCGAACG AAACTCTGGCGGGCACGAACAATCCACTCGCCTCAACGATCAATTCAAATTCATCAGTGAACTTCTGCCAAAAAT TGATGCTGTGCATATACCTGAGTGTGATTTCGACCGCGCTTTAGCCAGAGCACGTCCCGTTATTCGGGACGTCAC CCACCAAAGAGCGGCTACGATTCCCGTTGAAAGTGGCACAAGCCGGCCAATGGCTGTCAAAGGCCTTAGTAACAG TGGACCACAGTCGATTGCGGTCAATATTTCTGCGACAGAGGGCCCTTCCGCGGCCGAGCGTGAAGCTGAAAAGGC TCGAAAGGAACATATCGCGCGGCAAAATTCGCTGCCGTCATGGATGTCTAATAGCACCGTCACCGGGGAATCTTT CTCTGGTATCACAGACACTAATATGAGCGCCGGCATCAAGGGCGAGGTCGGGGGTATCTCGATTATTAAACCCGT GGACCTCAACACCAGTGCGCAGATTGACGACATCTTCGAGAAGCTCAAAGCTGAACAGGCGGCTGAGAATTCACA ACAAGAGAGAAATCCTGATGATGAAGAACTTTACTCCGGTGAAGACGGTGAAGATCAATTCGAAGACGTACCAGC TAACGACATGTCAATATTCCAGGCGGCTGACGTTCCGCGAGGAGCTCAAGTCGACTCACCCCCAGGCATTGATGA GAGGCCGGCTAAGCGGGTAAAGCTGAAAACCGGCTTGCTCGATCGAAACGTTCTGGGAGAGAGGGACGAGGAAAA TGACGAGGAACTCGAGTTCGAGAATGTATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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