Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5404
Gene name
LocationContig_270:6062..7109
Strand+
Gene length (bp)1047
Transcript length (bp)1047
Coding sequence length (bp)1047
Protein length (aa) 349

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF11790 Glyco_hydro_cc Glycosyl hydrolase catalytic core 3.8E-38 113 343

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q09788|ASL1_SCHPO Alkali-sensitive linkage protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=asl1 PE=1 SV=1 114 347 6.0E-09

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5404
MFIKNIVAVAATAALAEQALALNSHRHLHRRRPQDNPAPIIQTIYETVTADGNPVETPSPQVYADIAPPPPQPQP
TTMATYAKPGDAPPTASTPASPDSGDVCGGNPFTQPIGLAYDDVNLVNTFPELAKVGWASNWNSDPGNLNPSIQF
VPTLRNDPDCLKRWEGDLAKAVERGSKAAQSLNEPDISSQANMTPRQAAEFHVKYMNRAGEMGLKVSAPSVSNSE
KPNQGLDYLRQWVEVCKELKCTYHFCTVHWYSPLKYKETLYDHISQAQKICGKPVVLGEFGLVDDAGQHIDSKSL
LEEAIPKFKGNSCLWGYAPFYCAVGGNQGRLLDSPAKLSDTGKALVSS*
Coding >Hirsu2|5404
ATGTTTATCAAAAACATCGTGGCCGTCGCCGCCACTGCCGCTCTCGCCGAGCAGGCTCTGGCCCTCAACTCGCAC
CGCCACCTTCACCGACGCCGGCCCCAAGACAACCCGGCCCCCATCATTCAGACCATCTACGAGACCGTCACCGCC
GATGGCAACCCTGTCGAGACGCCGTCGCCCCAGGTGTATGCGGACATCGCTCCCCCGCCCCCGCAACCGCAGCCG
ACGACCATGGCCACGTACGCCAAGCCTGGCGATGCCCCCCCTACCGCCTCGACGCCGGCCTCGCCTGACAGCGGA
GACGTTTGCGGGGGCAACCCCTTCACCCAACCCATCGGCCTGGCGTACGACGATGTCAATCTCGTCAACACCTTC
CCCGAGCTGGCCAAGGTCGGCTGGGCCTCCAACTGGAACTCGGATCCCGGGAACCTCAACCCGAGCATCCAGTTC
GTGCCCACGCTGCGCAACGATCCCGACTGCCTCAAGAGGTGGGAGGGGGACTTGGCCAAAGCCGTCGAAAGGGGC
TCCAAGGCCGCCCAGAGCTTGAACGAGCCCGACATCAGCTCGCAGGCCAACATGACACCCCGGCAGGCGGCCGAG
TTCCACGTCAAGTACATGAACCGGGCCGGCGAAATGGGGCTCAAGGTCAGCGCGCCGAGCGTGTCCAACAGCGAA
AAGCCCAACCAGGGCCTCGACTATCTCAGGCAATGGGTCGAGGTGTGCAAGGAGCTCAAGTGCACCTACCACTTC
TGCACCGTCCACTGGTACTCGCCGCTCAAGTACAAAGAGACGCTCTACGACCACATCAGCCAGGCCCAAAAGATT
TGCGGCAAGCCCGTGGTACTGGGCGAGTTCGGCCTCGTCGACGACGCCGGCCAACACATCGACTCGAAGAGCCTG
CTCGAGGAGGCGATTCCCAAGTTCAAGGGGAACTCGTGCCTCTGGGGCTACGCGCCCTTCTACTGCGCCGTCGGC
GGCAACCAGGGCCGCCTGCTGGATTCGCCCGCGAAGCTCAGCGACACGGGCAAGGCCCTGGTCAGCAGCTAG
Transcript >Hirsu2|5404
ATGTTTATCAAAAACATCGTGGCCGTCGCCGCCACTGCCGCTCTCGCCGAGCAGGCTCTGGCCCTCAACTCGCAC
CGCCACCTTCACCGACGCCGGCCCCAAGACAACCCGGCCCCCATCATTCAGACCATCTACGAGACCGTCACCGCC
GATGGCAACCCTGTCGAGACGCCGTCGCCCCAGGTGTATGCGGACATCGCTCCCCCGCCCCCGCAACCGCAGCCG
ACGACCATGGCCACGTACGCCAAGCCTGGCGATGCCCCCCCTACCGCCTCGACGCCGGCCTCGCCTGACAGCGGA
GACGTTTGCGGGGGCAACCCCTTCACCCAACCCATCGGCCTGGCGTACGACGATGTCAATCTCGTCAACACCTTC
CCCGAGCTGGCCAAGGTCGGCTGGGCCTCCAACTGGAACTCGGATCCCGGGAACCTCAACCCGAGCATCCAGTTC
GTGCCCACGCTGCGCAACGATCCCGACTGCCTCAAGAGGTGGGAGGGGGACTTGGCCAAAGCCGTCGAAAGGGGC
TCCAAGGCCGCCCAGAGCTTGAACGAGCCCGACATCAGCTCGCAGGCCAACATGACACCCCGGCAGGCGGCCGAG
TTCCACGTCAAGTACATGAACCGGGCCGGCGAAATGGGGCTCAAGGTCAGCGCGCCGAGCGTGTCCAACAGCGAA
AAGCCCAACCAGGGCCTCGACTATCTCAGGCAATGGGTCGAGGTGTGCAAGGAGCTCAAGTGCACCTACCACTTC
TGCACCGTCCACTGGTACTCGCCGCTCAAGTACAAAGAGACGCTCTACGACCACATCAGCCAGGCCCAAAAGATT
TGCGGCAAGCCCGTGGTACTGGGCGAGTTCGGCCTCGTCGACGACGCCGGCCAACACATCGACTCGAAGAGCCTG
CTCGAGGAGGCGATTCCCAAGTTCAAGGGGAACTCGTGCCTCTGGGGCTACGCGCCCTTCTACTGCGCCGTCGGC
GGCAACCAGGGCCGCCTGCTGGATTCGCCCGCGAAGCTCAGCGACACGGGCAAGGCCCTGGTCAGCAGCTAG
Gene >Hirsu2|5404
ATGTTTATCAAAAACATCGTGGCCGTCGCCGCCACTGCCGCTCTCGCCGAGCAGGCTCTGGCCCTCAACTCGCAC
CGCCACCTTCACCGACGCCGGCCCCAAGACAACCCGGCCCCCATCATTCAGACCATCTACGAGACCGTCACCGCC
GATGGCAACCCTGTCGAGACGCCGTCGCCCCAGGTGTATGCGGACATCGCTCCCCCGCCCCCGCAACCGCAGCCG
ACGACCATGGCCACGTACGCCAAGCCTGGCGATGCCCCCCCTACCGCCTCGACGCCGGCCTCGCCTGACAGCGGA
GACGTTTGCGGGGGCAACCCCTTCACCCAACCCATCGGCCTGGCGTACGACGATGTCAATCTCGTCAACACCTTC
CCCGAGCTGGCCAAGGTCGGCTGGGCCTCCAACTGGAACTCGGATCCCGGGAACCTCAACCCGAGCATCCAGTTC
GTGCCCACGCTGCGCAACGATCCCGACTGCCTCAAGAGGTGGGAGGGGGACTTGGCCAAAGCCGTCGAAAGGGGC
TCCAAGGCCGCCCAGAGCTTGAACGAGCCCGACATCAGCTCGCAGGCCAACATGACACCCCGGCAGGCGGCCGAG
TTCCACGTCAAGTACATGAACCGGGCCGGCGAAATGGGGCTCAAGGTCAGCGCGCCGAGCGTGTCCAACAGCGAA
AAGCCCAACCAGGGCCTCGACTATCTCAGGCAATGGGTCGAGGTGTGCAAGGAGCTCAAGTGCACCTACCACTTC
TGCACCGTCCACTGGTACTCGCCGCTCAAGTACAAAGAGACGCTCTACGACCACATCAGCCAGGCCCAAAAGATT
TGCGGCAAGCCCGTGGTACTGGGCGAGTTCGGCCTCGTCGACGACGCCGGCCAACACATCGACTCGAAGAGCCTG
CTCGAGGAGGCGATTCCCAAGTTCAAGGGGAACTCGTGCCTCTGGGGCTACGCGCCCTTCTACTGCGCCGTCGGC
GGCAACCAGGGCCGCCTGCTGGATTCGCCCGCGAAGCTCAGCGACACGGGCAAGGCCCTGGTCAGCAGCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail