© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|54 |
| Gene name | |
| Location | Contig_1004:6446..9343 |
| Strand | + |
| Gene length (bp) | 2897 |
| Transcript length (bp) | 2691 |
| Coding sequence length (bp) | 2691 |
| Protein length (aa) | 897 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08590 | DUF1771 | Domain of unknown function (DUF1771) | 1.1E-14 | 694 | 757 |
| PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 6.2E-03 | 450 | 469 |
| PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 8.6E-04 | 475 | 494 |
| PF01713 | Smr | Smr domain | 7.5E-07 | 769 | 824 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O64843|CID7_ARATH | Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana GN=CID7 PE=1 SV=1 | 672 | 824 | 4.0E-18 |
| sp|Q86UW6|N4BP2_HUMAN | NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2 | 694 | 836 | 2.0E-07 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Nuclear localization signal | 0.6655 | 0.399 | 0.4449 | 0.0842 | 0.199 | 0.0893 | 0.1839 | 0.0785 | 0.1982 | 0.0656 |
| Orthofinder run ID | 4 |
| Orthogroup | 3100 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|54 LPNPVPGLACAAAKFQAARLRSVVCDPAVRDPSKRFHQLRISTAGHLRRHASFFRPLVVCLVVCPLPAARLASPP RPLRGLAVLDGFSLGRVVRRRPSLVAFAFASLRRQRRPLHAQRRPDWSPLRFRSTWARRRNVIRPSSALDACYTD HRLVRLPAAKREPSNMVSDEHYELCLPILQDPSLEDEDKTDRLEDLLKKETSLTGPSLDNVVLDAMWRYREAGGV SASPPPIRQSILRRPSPASWRGSSTPVTGSPRLGVSPLAPPGFVPATFSRTKSSTASPFSSPRASPRLALATPAI PHSPNLNAYEFASDPTPATEILGDYQTENVEWLVNDDAVSVSSSVGTSSGLNAAAPEFSSMSSQQADMSPYDMLR SILGQTRTDEEIEAALALHGYDLSATIAAIMESQVSDGALLNAPMDEPRGVMIGKSISPDGRPSTPASQQKTGVI CKFYMSTGQCLRADCRFSHDLSSHICKYWVMGNCLAGETCIFSHDPSKLVNKLSMEENGAAPAKNYGSPQLQDTN SFPFLQQENAGHKGGPAVDGAAAAAAANLTPPMGPRHLHGTESPRLRSRPGSRQQTKDMTSAPALDDNEAFPSLG SASMKQGKKHHGKRGGHGHSHKENLVPSSLADIVKRTPSPAPGSSRPESRKSCQNGGGAVVPLRNGENSAASQAI PSPKNIPWLETGDRANKAYLKARQEAIKHGGLRNKFLQSAAQAWNRNDARAAKALSLRGQSENDLMRKAHREAAR ELYEQRNKGGMGSGSETYVDLHGLHPEEAVDYLEKVLTENGKQARPVYAITGTGHHSKNGKDKVGKAIRNFLNEW RYAYREFSVPGDRNSMGGILGIDARSRDKSRAREREDSKNEVDILSQGVEIGDGKVRLLVRDPPKGPSSRR* |
| Coding | >Hirsu2|54 CTGCCTAATCCGGTGCCGGGGCTCGCGTGCGCAGCGGCCAAGTTTCAGGCCGCCCGGCTGCGATCCGTCGTCTGC GATCCCGCCGTCCGCGATCCGTCGAAGCGCTTCCACCAGCTGCGCATCTCTACCGCCGGGCATCTGCGACGCCAT GCGAGCTTCTTCCGTCCGCTCGTCGTCTGCCTCGTCGTCTGCCCGCTGCCCGCTGCCCGCCTCGCCTCGCCCCCT CGCCCTCTTCGTGGCCTGGCCGTCCTCGACGGCTTCTCATTGGGCCGAGTCGTGAGACGTAGACCTTCGCTTGTT GCTTTCGCCTTCGCCTCCCTCCGCCGCCAGCGTCGGCCGCTTCACGCACAGAGGCGTCCCGACTGGTCTCCGCTC CGCTTCCGCTCGACTTGGGCAAGGCGGAGAAACGTGATCCGCCCGAGCTCGGCGCTCGACGCCTGCTACACCGAC CATCGTCTTGTCCGCCTCCCTGCCGCCAAACGCGAGCCGTCCAACATGGTGTCGGACGAGCACTACGAGCTGTGC CTGCCCATCCTGCAGGACCCCTCCCTCGAAGACGAAGACAAGACCGACAGGCTCGAGGACCTCCTCAAGAAGGAG ACAAGCCTGACGGGACCCTCCCTCGATAATGTCGTCCTCGACGCCATGTGGAGATACCGCGAAGCCGGAGGGGTG TCGGCATCGCCTCCGCCCATCCGCCAGTCCATCCTGCGCCGCCCTTCGCCGGCCTCGTGGCGCGGATCATCGACG CCCGTGACGGGATCCCCGCGGCTGGGCGTCAGTCCGCTGGCACCGCCCGGCTTCGTCCCGGCCACCTTCAGCCGG ACCAAGTCGTCGACGGCCTCGCCCTTTTCCTCGCCGCGCGCCTCGCCGCGCCTCGCCCTGGCCACGCCGGCCATC CCCCACAGCCCGAACCTCAACGCCTACGAGTTCGCGAGCGACCCGACGCCCGCCACCGAAATCCTGGGCGACTAC CAGACGGAGAACGTCGAGTGGCTGGTCAACGACGACGCCGTCAGCGTCTCCTCGTCCGTCGGCACCTCGAGCGGG CTCAACGCCGCCGCGCCCGAATTCTCCTCCATGTCCTCCCAGCAGGCCGACATGTCGCCGTACGACATGCTGCGC TCGATTCTCGGACAGACGCGGACCGACGAGGAGATTGAAGCCGCGCTGGCCCTGCACGGCTACGACCTGAGCGCC ACCATCGCGGCCATCATGGAGAGCCAGGTTTCGGACGGGGCCCTCTTGAACGCGCCCATGGACGAGCCCAGGGGC GTCATGATCGGCAAGTCCATCTCCCCCGACGGACGCCCGTCCACGCCGGCCAGCCAGCAGAAGACGGGCGTCATC TGCAAGTTCTACATGTCGACGGGGCAGTGTCTCCGTGCCGACTGCCGCTTCAGCCACGACCTGAGCAGCCACATC TGCAAGTACTGGGTCATGGGGAATTGCCTTGCCGGCGAGACGTGCATCTTTTCGCACGACCCGTCCAAGCTGGTG AACAAGCTGTCGATGGAGGAGAACGGGGCCGCTCCGGCCAAGAACTATGGCAGCCCCCAGCTGCAGGACACGAAC TCGTTCCCGTTTCTCCAGCAAGAAAACGCGGGACACAAGGGCGGCCCTGCCGTCGACGGGGCCGCCGCCGCCGCC GCCGCCAACCTCACGCCCCCGATGGGGCCTCGCCACCTGCACGGCACGGAGAGTCCACGACTGAGATCGCGGCCC GGCAGCCGGCAGCAAACCAAGGACATGACGTCGGCCCCGGCCTTGGACGACAACGAGGCATTTCCGTCGCTCGGC TCGGCATCGATGAAGCAGGGCAAGAAGCACCACGGTAAGCGCGGGGGACACGGCCACAGCCACAAGGAGAACCTG GTGCCCAGCTCGTTGGCAGACATTGTCAAGAGGACGCCGTCGCCGGCGCCCGGGTCGTCGCGGCCCGAATCGAGG AAGTCGTGCCAAAACGGAGGTGGAGCGGTGGTGCCGCTGCGCAACGGCGAGAACAGCGCGGCGTCGCAGGCGATC CCCAGCCCCAAGAACATACCCTGGCTGGAGACGGGCGACCGGGCGAACAAGGCGTATCTGAAGGCCCGCCAGGAG GCTATCAAGCACGGCGGGCTCCGGAACAAGTTCCTGCAGAGTGCGGCGCAAGCGTGGAACCGCAACGACGCGAGG GCGGCCAAGGCGCTGAGCCTGCGAGGCCAGAGCGAGAACGACCTGATGCGAAAGGCGCACCGCGAGGCGGCGCGC GAGCTGTACGAGCAGCGGAACAAGGGCGGCATGGGCAGCGGGTCGGAGACATACGTGGACCTCCACGGCCTCCAC CCGGAGGAGGCGGTCGACTACCTGGAGAAGGTGCTGACGGAGAACGGCAAACAGGCGCGGCCGGTGTACGCCATC ACGGGCACGGGGCACCACAGCAAGAACGGCAAGGACAAGGTGGGCAAGGCGATCCGCAACTTTCTCAACGAGTGG CGGTACGCCTACCGCGAGTTCTCGGTGCCCGGGGACCGCAACAGCATGGGCGGCATCCTGGGCATCGACGCGCGC AGCCGGGACAAGTCGCGGGCGCGGGAGCGCGAGGACAGCAAGAACGAGGTCGACATTCTCAGCCAGGGCGTCGAG ATCGGGGACGGCAAGGTGCGGCTGCTGGTGCGCGACCCGCCCAAGGGGCCGAGCAGCCGCCGATGA |
| Transcript | >Hirsu2|54 CTGCCTAATCCGGTGCCGGGGCTCGCGTGCGCAGCGGCCAAGTTTCAGGCCGCCCGGCTGCGATCCGTCGTCTGC GATCCCGCCGTCCGCGATCCGTCGAAGCGCTTCCACCAGCTGCGCATCTCTACCGCCGGGCATCTGCGACGCCAT GCGAGCTTCTTCCGTCCGCTCGTCGTCTGCCTCGTCGTCTGCCCGCTGCCCGCTGCCCGCCTCGCCTCGCCCCCT CGCCCTCTTCGTGGCCTGGCCGTCCTCGACGGCTTCTCATTGGGCCGAGTCGTGAGACGTAGACCTTCGCTTGTT GCTTTCGCCTTCGCCTCCCTCCGCCGCCAGCGTCGGCCGCTTCACGCACAGAGGCGTCCCGACTGGTCTCCGCTC CGCTTCCGCTCGACTTGGGCAAGGCGGAGAAACGTGATCCGCCCGAGCTCGGCGCTCGACGCCTGCTACACCGAC CATCGTCTTGTCCGCCTCCCTGCCGCCAAACGCGAGCCGTCCAACATGGTGTCGGACGAGCACTACGAGCTGTGC CTGCCCATCCTGCAGGACCCCTCCCTCGAAGACGAAGACAAGACCGACAGGCTCGAGGACCTCCTCAAGAAGGAG ACAAGCCTGACGGGACCCTCCCTCGATAATGTCGTCCTCGACGCCATGTGGAGATACCGCGAAGCCGGAGGGGTG TCGGCATCGCCTCCGCCCATCCGCCAGTCCATCCTGCGCCGCCCTTCGCCGGCCTCGTGGCGCGGATCATCGACG CCCGTGACGGGATCCCCGCGGCTGGGCGTCAGTCCGCTGGCACCGCCCGGCTTCGTCCCGGCCACCTTCAGCCGG ACCAAGTCGTCGACGGCCTCGCCCTTTTCCTCGCCGCGCGCCTCGCCGCGCCTCGCCCTGGCCACGCCGGCCATC CCCCACAGCCCGAACCTCAACGCCTACGAGTTCGCGAGCGACCCGACGCCCGCCACCGAAATCCTGGGCGACTAC CAGACGGAGAACGTCGAGTGGCTGGTCAACGACGACGCCGTCAGCGTCTCCTCGTCCGTCGGCACCTCGAGCGGG CTCAACGCCGCCGCGCCCGAATTCTCCTCCATGTCCTCCCAGCAGGCCGACATGTCGCCGTACGACATGCTGCGC TCGATTCTCGGACAGACGCGGACCGACGAGGAGATTGAAGCCGCGCTGGCCCTGCACGGCTACGACCTGAGCGCC ACCATCGCGGCCATCATGGAGAGCCAGGTTTCGGACGGGGCCCTCTTGAACGCGCCCATGGACGAGCCCAGGGGC GTCATGATCGGCAAGTCCATCTCCCCCGACGGACGCCCGTCCACGCCGGCCAGCCAGCAGAAGACGGGCGTCATC TGCAAGTTCTACATGTCGACGGGGCAGTGTCTCCGTGCCGACTGCCGCTTCAGCCACGACCTGAGCAGCCACATC TGCAAGTACTGGGTCATGGGGAATTGCCTTGCCGGCGAGACGTGCATCTTTTCGCACGACCCGTCCAAGCTGGTG AACAAGCTGTCGATGGAGGAGAACGGGGCCGCTCCGGCCAAGAACTATGGCAGCCCCCAGCTGCAGGACACGAAC TCGTTCCCGTTTCTCCAGCAAGAAAACGCGGGACACAAGGGCGGCCCTGCCGTCGACGGGGCCGCCGCCGCCGCC GCCGCCAACCTCACGCCCCCGATGGGGCCTCGCCACCTGCACGGCACGGAGAGTCCACGACTGAGATCGCGGCCC GGCAGCCGGCAGCAAACCAAGGACATGACGTCGGCCCCGGCCTTGGACGACAACGAGGCATTTCCGTCGCTCGGC TCGGCATCGATGAAGCAGGGCAAGAAGCACCACGGTAAGCGCGGGGGACACGGCCACAGCCACAAGGAGAACCTG GTGCCCAGCTCGTTGGCAGACATTGTCAAGAGGACGCCGTCGCCGGCGCCCGGGTCGTCGCGGCCCGAATCGAGG AAGTCGTGCCAAAACGGAGGTGGAGCGGTGGTGCCGCTGCGCAACGGCGAGAACAGCGCGGCGTCGCAGGCGATC CCCAGCCCCAAGAACATACCCTGGCTGGAGACGGGCGACCGGGCGAACAAGGCGTATCTGAAGGCCCGCCAGGAG GCTATCAAGCACGGCGGGCTCCGGAACAAGTTCCTGCAGAGTGCGGCGCAAGCGTGGAACCGCAACGACGCGAGG GCGGCCAAGGCGCTGAGCCTGCGAGGCCAGAGCGAGAACGACCTGATGCGAAAGGCGCACCGCGAGGCGGCGCGC GAGCTGTACGAGCAGCGGAACAAGGGCGGCATGGGCAGCGGGTCGGAGACATACGTGGACCTCCACGGCCTCCAC CCGGAGGAGGCGGTCGACTACCTGGAGAAGGTGCTGACGGAGAACGGCAAACAGGCGCGGCCGGTGTACGCCATC ACGGGCACGGGGCACCACAGCAAGAACGGCAAGGACAAGGTGGGCAAGGCGATCCGCAACTTTCTCAACGAGTGG CGGTACGCCTACCGCGAGTTCTCGGTGCCCGGGGACCGCAACAGCATGGGCGGCATCCTGGGCATCGACGCGCGC AGCCGGGACAAGTCGCGGGCGCGGGAGCGCGAGGACAGCAAGAACGAGGTCGACATTCTCAGCCAGGGCGTCGAG ATCGGGGACGGCAAGGTGCGGCTGCTGGTGCGCGACCCGCCCAAGGGGCCGAGCAGCCGCCGATGA |
| Gene | >Hirsu2|54 CTGCCTAATCCGGTGCCGGGGCTCGCGTGCGCAGCGGCCAAGTTTCAGGCCGCCCGGCTGCGATCCGTCGTCTGC GATCCCGCCGTCCGCGATCCGTCGAAGCGCTTCCACCAGCTGCGCATCTCTACCGCCGGGCATCTGCGACGCCAT GCGAGCTTCTTCCGTCCGCTCGTCGTCTGCCTCGTCGTCTGCCCGCTGCCCGCTGCCCGCCTCGCCTCGCCCCCT CGCCCTCTTCGTGGCCTGGCCGTCCTCGACGGCTTCTCATTGGGCCGAGTCGTGAGACGTAGACGTGAGCTCGCG GATGCCGCCGCCTCGTCGTCCCCTGAGATGCGCCAAGGCTTACTTACGAGACGCCATCAGCTTCGCTTGTTGCTT TCGCCTTCGCCTCCCTCCGCCGCCAGCGTCGGCCGCTTCACGCACAGAGGCGTCCCGACTGGTCTCCGCTCCGCT TCCGCTCGACTTGGGCAAGGCGGAGAAACGTGATCCGCCCGAGCTCGGCGCTCGACGCCTGCTACACCGACCATC GTCTTGTCCGCCTCCCTGCCGCCAAACGCGAGCCGTCCAACATGGTGTCGGACGAGCACTACGAGCTGTGCCTGC CCATCCTGCAGGACCCCTCCCTCGAAGACGAAGACAAGACCGACAGGCTCGAGGACCTCCTCAAGAAGGAGACAA GCCTGACGGGACCCTCCCTCGATAATGTCGTCCTCGACGCCATGTGGAGATACCGCGAAGCCGGAGGGGTGTCGG CATCGCCTCCGCCCATCCGCCAGTCCATCCTGCGCCGCCCTTCGCCGGCCTCGTGGCGCGGATCATCGACGCCCG TGACGGGATCCCCGCGGCTGGGCGTCAGTCCGCTGGCACCGCCCGGCTTCGTCCCGGCCACCTTCAGCCGGACCA AGTCGTCGACGGCCTCGCCCTTTTCCTCGCCGCGCGCCTCGCCGCGCCTCGCCCTGGCCACGCCGGCCATCCCCC ACAGCCCGAACCTCAACGCCTACGAGTTCGCGAGCGACCCGACGCCCGCCACCGAAATCCTGGGCGACTACCAGA CGGAGAACGTCGAGTGGCTGGTCAACGACGACGCCGTCAGCGTCTCCTCGTCCGTCGGCACCTCGAGCGGGCTCA ACGCCGCCGCGCCCGAATTCTCCTCCATGTCCTCCCAGCAGGCCGACATGTCGCCGTACGACATGCTGCGCTCGA TTCTCGGACAGACGCGGACCGACGAGGAGATTGAAGCCGCGCTGGCCCTGCACGGCTACGACCTGAGCGCCACCA TCGCGGCCATCATGGAGAGCCAGGTTTCGGACGGGGCCCTCTTGAACGCGCCCATGGACGAGCCCAGGGGCGTCA TGATCGGCAAGTCCATCTCCCCCGACGGACGCCCGTCCACGCCGGCCAGCCAGCAGAAGACGGGCGTCATCTGCA AGTTCTACATGTCGACGGGGCAGTGTCTCCGTGCCGACTGCCGCTTCAGCCACGACCTGAGCAGCCACATCTGCA AGTAAGCCTCGCTCGTGATCCCGACTCATGACAGAATGGTTCCCCCGGCTCATCTGAGACAGGTACTGGGTCATG GGGAATTGCCTTGCCGGCGAGACGTGCATCTTTTCGCACGACCCGTCCAAGCTGGTGAACAAGCTGTCGATGGAG GAGAACGGGGCCGCTCCGGCCAAGAACTATGGCAGCCCCCAGCTGCAGGACACGAACTCGTTCCCGTTTCTCCAG CAAGAAAACGCGGGACACAAGGGCGGCCCTGCCGTCGACGGGGCCGCCGCCGCCGCCGCCGCCAACCTCACGCCC CCGATGGGGCCTCGCCACCTGCACGGCACGGAGAGTCCACGACTGAGATCGCGGCCCGGCAGCCGGCAGCAAACC AAGGACATGACGTCGGCCCCGGCCTTGGACGACAACGAGGCATTTCCGTCGCTCGGCTCGGCATCGATGAAGCAG GGCAAGAAGCACCACGGTAAGCGCGGGGGACACGGCCACAGCCACAAGGAGAACCTGGTGCCCAGCTCGTTGGCA GACATTGTCAAGAGGACGCCGTCGCCGGCGCCCGGGTCGTCGCGGCCCGAATCGAGGAAGTCGTGCCAAAACGGA GGTGGAGCGGTGGTGCCGCTGCGCAACGGCGAGAACAGCGCGGCGTCGCAGGCGATCCCCAGCCCCAAGAACATA CCCTGGCTGGAGACGGGCGACCGGGCGAACAAGGCGTATCTGAAGGCCCGCCAGGAGGCTATCAAGCACGGCGGG CTCCGGAACAAGTTCCTGCAGAGGTACGTCGGCTGCGGCCAGCCATGCTCACCCACCCACACCCGACACGGCCGG GGGCTAAAGCGGGAGGCGGCAGTGCGGCGCAAGCGTGGAACCGCAACGACGCGAGGGCGGCCAAGGCGCTGAGCC TGCGAGGCCAGAGCGAGAACGACCTGATGCGAAAGGCGCACCGCGAGGCGGCGCGCGAGCTGTACGAGCAGCGGA ACAAGGGCGGCATGGGCAGCGGGTCGGAGACATACGTGGACCTCCACGGCCTCCACCCGGAGGAGGCGGTCGACT ACCTGGAGAAGGTGCTGACGGAGAACGGCAAACAGGCGCGGCCGGTGTACGCCATCACGGGCACGGGGCACCACA GCAAGAACGGCAAGGACAAGGTGGGCAAGGCGATCCGCAACTTTCTCAACGAGTGGCGGTACGCCTACCGCGAGT TCTCGGTGCCCGGGGACCGCAACAGCATGGGCGGCATCCTGGGCATCGACGCGCGCAGCCGGGACAAGTCGCGGG CGCGGGAGCGCGAGGACAGCAAGAACGAGGTCGACATTCTCAGCCAGGGCGTCGAGATCGGGGACGGCAAGGTGC GGCTGCTGGTGCGCGACCCGCCCAAGGGGCCGAGCAGCCGCCGATGA |