Protein ID | Hirsu2|54 |
Gene name | |
Location | Contig_1004:6446..9343 |
Strand | + |
Gene length (bp) | 2897 |
Transcript length (bp) | 2691 |
Coding sequence length (bp) | 2691 |
Protein length (aa) | 897 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08590 | DUF1771 | Domain of unknown function (DUF1771) | 1.1E-14 | 694 | 757 |
PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 6.2E-03 | 450 | 469 |
PF14608 | zf-CCCH_2 | RNA-binding, Nab2-type zinc finger | 8.6E-04 | 475 | 494 |
PF01713 | Smr | Smr domain | 7.5E-07 | 769 | 824 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O64843|CID7_ARATH | Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana GN=CID7 PE=1 SV=1 | 672 | 824 | 4.0E-18 |
sp|Q86UW6|N4BP2_HUMAN | NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2 | 694 | 836 | 2.0E-07 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | Nuclear localization signal | 0.6655 | 0.399 | 0.4449 | 0.0842 | 0.199 | 0.0893 | 0.1839 | 0.0785 | 0.1982 | 0.0656 |
Orthofinder run ID | 4 |
Orthogroup | 3100 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|54 LPNPVPGLACAAAKFQAARLRSVVCDPAVRDPSKRFHQLRISTAGHLRRHASFFRPLVVCLVVCPLPAARLASPP RPLRGLAVLDGFSLGRVVRRRPSLVAFAFASLRRQRRPLHAQRRPDWSPLRFRSTWARRRNVIRPSSALDACYTD HRLVRLPAAKREPSNMVSDEHYELCLPILQDPSLEDEDKTDRLEDLLKKETSLTGPSLDNVVLDAMWRYREAGGV SASPPPIRQSILRRPSPASWRGSSTPVTGSPRLGVSPLAPPGFVPATFSRTKSSTASPFSSPRASPRLALATPAI PHSPNLNAYEFASDPTPATEILGDYQTENVEWLVNDDAVSVSSSVGTSSGLNAAAPEFSSMSSQQADMSPYDMLR SILGQTRTDEEIEAALALHGYDLSATIAAIMESQVSDGALLNAPMDEPRGVMIGKSISPDGRPSTPASQQKTGVI CKFYMSTGQCLRADCRFSHDLSSHICKYWVMGNCLAGETCIFSHDPSKLVNKLSMEENGAAPAKNYGSPQLQDTN SFPFLQQENAGHKGGPAVDGAAAAAAANLTPPMGPRHLHGTESPRLRSRPGSRQQTKDMTSAPALDDNEAFPSLG SASMKQGKKHHGKRGGHGHSHKENLVPSSLADIVKRTPSPAPGSSRPESRKSCQNGGGAVVPLRNGENSAASQAI PSPKNIPWLETGDRANKAYLKARQEAIKHGGLRNKFLQSAAQAWNRNDARAAKALSLRGQSENDLMRKAHREAAR ELYEQRNKGGMGSGSETYVDLHGLHPEEAVDYLEKVLTENGKQARPVYAITGTGHHSKNGKDKVGKAIRNFLNEW RYAYREFSVPGDRNSMGGILGIDARSRDKSRAREREDSKNEVDILSQGVEIGDGKVRLLVRDPPKGPSSRR* |
Coding | >Hirsu2|54 CTGCCTAATCCGGTGCCGGGGCTCGCGTGCGCAGCGGCCAAGTTTCAGGCCGCCCGGCTGCGATCCGTCGTCTGC GATCCCGCCGTCCGCGATCCGTCGAAGCGCTTCCACCAGCTGCGCATCTCTACCGCCGGGCATCTGCGACGCCAT GCGAGCTTCTTCCGTCCGCTCGTCGTCTGCCTCGTCGTCTGCCCGCTGCCCGCTGCCCGCCTCGCCTCGCCCCCT CGCCCTCTTCGTGGCCTGGCCGTCCTCGACGGCTTCTCATTGGGCCGAGTCGTGAGACGTAGACCTTCGCTTGTT GCTTTCGCCTTCGCCTCCCTCCGCCGCCAGCGTCGGCCGCTTCACGCACAGAGGCGTCCCGACTGGTCTCCGCTC CGCTTCCGCTCGACTTGGGCAAGGCGGAGAAACGTGATCCGCCCGAGCTCGGCGCTCGACGCCTGCTACACCGAC CATCGTCTTGTCCGCCTCCCTGCCGCCAAACGCGAGCCGTCCAACATGGTGTCGGACGAGCACTACGAGCTGTGC CTGCCCATCCTGCAGGACCCCTCCCTCGAAGACGAAGACAAGACCGACAGGCTCGAGGACCTCCTCAAGAAGGAG ACAAGCCTGACGGGACCCTCCCTCGATAATGTCGTCCTCGACGCCATGTGGAGATACCGCGAAGCCGGAGGGGTG TCGGCATCGCCTCCGCCCATCCGCCAGTCCATCCTGCGCCGCCCTTCGCCGGCCTCGTGGCGCGGATCATCGACG CCCGTGACGGGATCCCCGCGGCTGGGCGTCAGTCCGCTGGCACCGCCCGGCTTCGTCCCGGCCACCTTCAGCCGG ACCAAGTCGTCGACGGCCTCGCCCTTTTCCTCGCCGCGCGCCTCGCCGCGCCTCGCCCTGGCCACGCCGGCCATC CCCCACAGCCCGAACCTCAACGCCTACGAGTTCGCGAGCGACCCGACGCCCGCCACCGAAATCCTGGGCGACTAC CAGACGGAGAACGTCGAGTGGCTGGTCAACGACGACGCCGTCAGCGTCTCCTCGTCCGTCGGCACCTCGAGCGGG CTCAACGCCGCCGCGCCCGAATTCTCCTCCATGTCCTCCCAGCAGGCCGACATGTCGCCGTACGACATGCTGCGC TCGATTCTCGGACAGACGCGGACCGACGAGGAGATTGAAGCCGCGCTGGCCCTGCACGGCTACGACCTGAGCGCC ACCATCGCGGCCATCATGGAGAGCCAGGTTTCGGACGGGGCCCTCTTGAACGCGCCCATGGACGAGCCCAGGGGC GTCATGATCGGCAAGTCCATCTCCCCCGACGGACGCCCGTCCACGCCGGCCAGCCAGCAGAAGACGGGCGTCATC TGCAAGTTCTACATGTCGACGGGGCAGTGTCTCCGTGCCGACTGCCGCTTCAGCCACGACCTGAGCAGCCACATC TGCAAGTACTGGGTCATGGGGAATTGCCTTGCCGGCGAGACGTGCATCTTTTCGCACGACCCGTCCAAGCTGGTG AACAAGCTGTCGATGGAGGAGAACGGGGCCGCTCCGGCCAAGAACTATGGCAGCCCCCAGCTGCAGGACACGAAC TCGTTCCCGTTTCTCCAGCAAGAAAACGCGGGACACAAGGGCGGCCCTGCCGTCGACGGGGCCGCCGCCGCCGCC GCCGCCAACCTCACGCCCCCGATGGGGCCTCGCCACCTGCACGGCACGGAGAGTCCACGACTGAGATCGCGGCCC GGCAGCCGGCAGCAAACCAAGGACATGACGTCGGCCCCGGCCTTGGACGACAACGAGGCATTTCCGTCGCTCGGC TCGGCATCGATGAAGCAGGGCAAGAAGCACCACGGTAAGCGCGGGGGACACGGCCACAGCCACAAGGAGAACCTG GTGCCCAGCTCGTTGGCAGACATTGTCAAGAGGACGCCGTCGCCGGCGCCCGGGTCGTCGCGGCCCGAATCGAGG AAGTCGTGCCAAAACGGAGGTGGAGCGGTGGTGCCGCTGCGCAACGGCGAGAACAGCGCGGCGTCGCAGGCGATC CCCAGCCCCAAGAACATACCCTGGCTGGAGACGGGCGACCGGGCGAACAAGGCGTATCTGAAGGCCCGCCAGGAG GCTATCAAGCACGGCGGGCTCCGGAACAAGTTCCTGCAGAGTGCGGCGCAAGCGTGGAACCGCAACGACGCGAGG GCGGCCAAGGCGCTGAGCCTGCGAGGCCAGAGCGAGAACGACCTGATGCGAAAGGCGCACCGCGAGGCGGCGCGC GAGCTGTACGAGCAGCGGAACAAGGGCGGCATGGGCAGCGGGTCGGAGACATACGTGGACCTCCACGGCCTCCAC CCGGAGGAGGCGGTCGACTACCTGGAGAAGGTGCTGACGGAGAACGGCAAACAGGCGCGGCCGGTGTACGCCATC ACGGGCACGGGGCACCACAGCAAGAACGGCAAGGACAAGGTGGGCAAGGCGATCCGCAACTTTCTCAACGAGTGG CGGTACGCCTACCGCGAGTTCTCGGTGCCCGGGGACCGCAACAGCATGGGCGGCATCCTGGGCATCGACGCGCGC AGCCGGGACAAGTCGCGGGCGCGGGAGCGCGAGGACAGCAAGAACGAGGTCGACATTCTCAGCCAGGGCGTCGAG ATCGGGGACGGCAAGGTGCGGCTGCTGGTGCGCGACCCGCCCAAGGGGCCGAGCAGCCGCCGATGA |
Transcript | >Hirsu2|54 CTGCCTAATCCGGTGCCGGGGCTCGCGTGCGCAGCGGCCAAGTTTCAGGCCGCCCGGCTGCGATCCGTCGTCTGC GATCCCGCCGTCCGCGATCCGTCGAAGCGCTTCCACCAGCTGCGCATCTCTACCGCCGGGCATCTGCGACGCCAT GCGAGCTTCTTCCGTCCGCTCGTCGTCTGCCTCGTCGTCTGCCCGCTGCCCGCTGCCCGCCTCGCCTCGCCCCCT CGCCCTCTTCGTGGCCTGGCCGTCCTCGACGGCTTCTCATTGGGCCGAGTCGTGAGACGTAGACCTTCGCTTGTT GCTTTCGCCTTCGCCTCCCTCCGCCGCCAGCGTCGGCCGCTTCACGCACAGAGGCGTCCCGACTGGTCTCCGCTC CGCTTCCGCTCGACTTGGGCAAGGCGGAGAAACGTGATCCGCCCGAGCTCGGCGCTCGACGCCTGCTACACCGAC CATCGTCTTGTCCGCCTCCCTGCCGCCAAACGCGAGCCGTCCAACATGGTGTCGGACGAGCACTACGAGCTGTGC CTGCCCATCCTGCAGGACCCCTCCCTCGAAGACGAAGACAAGACCGACAGGCTCGAGGACCTCCTCAAGAAGGAG ACAAGCCTGACGGGACCCTCCCTCGATAATGTCGTCCTCGACGCCATGTGGAGATACCGCGAAGCCGGAGGGGTG TCGGCATCGCCTCCGCCCATCCGCCAGTCCATCCTGCGCCGCCCTTCGCCGGCCTCGTGGCGCGGATCATCGACG CCCGTGACGGGATCCCCGCGGCTGGGCGTCAGTCCGCTGGCACCGCCCGGCTTCGTCCCGGCCACCTTCAGCCGG ACCAAGTCGTCGACGGCCTCGCCCTTTTCCTCGCCGCGCGCCTCGCCGCGCCTCGCCCTGGCCACGCCGGCCATC CCCCACAGCCCGAACCTCAACGCCTACGAGTTCGCGAGCGACCCGACGCCCGCCACCGAAATCCTGGGCGACTAC CAGACGGAGAACGTCGAGTGGCTGGTCAACGACGACGCCGTCAGCGTCTCCTCGTCCGTCGGCACCTCGAGCGGG CTCAACGCCGCCGCGCCCGAATTCTCCTCCATGTCCTCCCAGCAGGCCGACATGTCGCCGTACGACATGCTGCGC TCGATTCTCGGACAGACGCGGACCGACGAGGAGATTGAAGCCGCGCTGGCCCTGCACGGCTACGACCTGAGCGCC ACCATCGCGGCCATCATGGAGAGCCAGGTTTCGGACGGGGCCCTCTTGAACGCGCCCATGGACGAGCCCAGGGGC GTCATGATCGGCAAGTCCATCTCCCCCGACGGACGCCCGTCCACGCCGGCCAGCCAGCAGAAGACGGGCGTCATC TGCAAGTTCTACATGTCGACGGGGCAGTGTCTCCGTGCCGACTGCCGCTTCAGCCACGACCTGAGCAGCCACATC TGCAAGTACTGGGTCATGGGGAATTGCCTTGCCGGCGAGACGTGCATCTTTTCGCACGACCCGTCCAAGCTGGTG AACAAGCTGTCGATGGAGGAGAACGGGGCCGCTCCGGCCAAGAACTATGGCAGCCCCCAGCTGCAGGACACGAAC TCGTTCCCGTTTCTCCAGCAAGAAAACGCGGGACACAAGGGCGGCCCTGCCGTCGACGGGGCCGCCGCCGCCGCC GCCGCCAACCTCACGCCCCCGATGGGGCCTCGCCACCTGCACGGCACGGAGAGTCCACGACTGAGATCGCGGCCC GGCAGCCGGCAGCAAACCAAGGACATGACGTCGGCCCCGGCCTTGGACGACAACGAGGCATTTCCGTCGCTCGGC TCGGCATCGATGAAGCAGGGCAAGAAGCACCACGGTAAGCGCGGGGGACACGGCCACAGCCACAAGGAGAACCTG GTGCCCAGCTCGTTGGCAGACATTGTCAAGAGGACGCCGTCGCCGGCGCCCGGGTCGTCGCGGCCCGAATCGAGG AAGTCGTGCCAAAACGGAGGTGGAGCGGTGGTGCCGCTGCGCAACGGCGAGAACAGCGCGGCGTCGCAGGCGATC CCCAGCCCCAAGAACATACCCTGGCTGGAGACGGGCGACCGGGCGAACAAGGCGTATCTGAAGGCCCGCCAGGAG GCTATCAAGCACGGCGGGCTCCGGAACAAGTTCCTGCAGAGTGCGGCGCAAGCGTGGAACCGCAACGACGCGAGG GCGGCCAAGGCGCTGAGCCTGCGAGGCCAGAGCGAGAACGACCTGATGCGAAAGGCGCACCGCGAGGCGGCGCGC GAGCTGTACGAGCAGCGGAACAAGGGCGGCATGGGCAGCGGGTCGGAGACATACGTGGACCTCCACGGCCTCCAC CCGGAGGAGGCGGTCGACTACCTGGAGAAGGTGCTGACGGAGAACGGCAAACAGGCGCGGCCGGTGTACGCCATC ACGGGCACGGGGCACCACAGCAAGAACGGCAAGGACAAGGTGGGCAAGGCGATCCGCAACTTTCTCAACGAGTGG CGGTACGCCTACCGCGAGTTCTCGGTGCCCGGGGACCGCAACAGCATGGGCGGCATCCTGGGCATCGACGCGCGC AGCCGGGACAAGTCGCGGGCGCGGGAGCGCGAGGACAGCAAGAACGAGGTCGACATTCTCAGCCAGGGCGTCGAG ATCGGGGACGGCAAGGTGCGGCTGCTGGTGCGCGACCCGCCCAAGGGGCCGAGCAGCCGCCGATGA |
Gene | >Hirsu2|54 CTGCCTAATCCGGTGCCGGGGCTCGCGTGCGCAGCGGCCAAGTTTCAGGCCGCCCGGCTGCGATCCGTCGTCTGC GATCCCGCCGTCCGCGATCCGTCGAAGCGCTTCCACCAGCTGCGCATCTCTACCGCCGGGCATCTGCGACGCCAT GCGAGCTTCTTCCGTCCGCTCGTCGTCTGCCTCGTCGTCTGCCCGCTGCCCGCTGCCCGCCTCGCCTCGCCCCCT CGCCCTCTTCGTGGCCTGGCCGTCCTCGACGGCTTCTCATTGGGCCGAGTCGTGAGACGTAGACGTGAGCTCGCG GATGCCGCCGCCTCGTCGTCCCCTGAGATGCGCCAAGGCTTACTTACGAGACGCCATCAGCTTCGCTTGTTGCTT TCGCCTTCGCCTCCCTCCGCCGCCAGCGTCGGCCGCTTCACGCACAGAGGCGTCCCGACTGGTCTCCGCTCCGCT TCCGCTCGACTTGGGCAAGGCGGAGAAACGTGATCCGCCCGAGCTCGGCGCTCGACGCCTGCTACACCGACCATC GTCTTGTCCGCCTCCCTGCCGCCAAACGCGAGCCGTCCAACATGGTGTCGGACGAGCACTACGAGCTGTGCCTGC CCATCCTGCAGGACCCCTCCCTCGAAGACGAAGACAAGACCGACAGGCTCGAGGACCTCCTCAAGAAGGAGACAA GCCTGACGGGACCCTCCCTCGATAATGTCGTCCTCGACGCCATGTGGAGATACCGCGAAGCCGGAGGGGTGTCGG CATCGCCTCCGCCCATCCGCCAGTCCATCCTGCGCCGCCCTTCGCCGGCCTCGTGGCGCGGATCATCGACGCCCG TGACGGGATCCCCGCGGCTGGGCGTCAGTCCGCTGGCACCGCCCGGCTTCGTCCCGGCCACCTTCAGCCGGACCA AGTCGTCGACGGCCTCGCCCTTTTCCTCGCCGCGCGCCTCGCCGCGCCTCGCCCTGGCCACGCCGGCCATCCCCC ACAGCCCGAACCTCAACGCCTACGAGTTCGCGAGCGACCCGACGCCCGCCACCGAAATCCTGGGCGACTACCAGA CGGAGAACGTCGAGTGGCTGGTCAACGACGACGCCGTCAGCGTCTCCTCGTCCGTCGGCACCTCGAGCGGGCTCA ACGCCGCCGCGCCCGAATTCTCCTCCATGTCCTCCCAGCAGGCCGACATGTCGCCGTACGACATGCTGCGCTCGA TTCTCGGACAGACGCGGACCGACGAGGAGATTGAAGCCGCGCTGGCCCTGCACGGCTACGACCTGAGCGCCACCA TCGCGGCCATCATGGAGAGCCAGGTTTCGGACGGGGCCCTCTTGAACGCGCCCATGGACGAGCCCAGGGGCGTCA TGATCGGCAAGTCCATCTCCCCCGACGGACGCCCGTCCACGCCGGCCAGCCAGCAGAAGACGGGCGTCATCTGCA AGTTCTACATGTCGACGGGGCAGTGTCTCCGTGCCGACTGCCGCTTCAGCCACGACCTGAGCAGCCACATCTGCA AGTAAGCCTCGCTCGTGATCCCGACTCATGACAGAATGGTTCCCCCGGCTCATCTGAGACAGGTACTGGGTCATG GGGAATTGCCTTGCCGGCGAGACGTGCATCTTTTCGCACGACCCGTCCAAGCTGGTGAACAAGCTGTCGATGGAG GAGAACGGGGCCGCTCCGGCCAAGAACTATGGCAGCCCCCAGCTGCAGGACACGAACTCGTTCCCGTTTCTCCAG CAAGAAAACGCGGGACACAAGGGCGGCCCTGCCGTCGACGGGGCCGCCGCCGCCGCCGCCGCCAACCTCACGCCC CCGATGGGGCCTCGCCACCTGCACGGCACGGAGAGTCCACGACTGAGATCGCGGCCCGGCAGCCGGCAGCAAACC AAGGACATGACGTCGGCCCCGGCCTTGGACGACAACGAGGCATTTCCGTCGCTCGGCTCGGCATCGATGAAGCAG GGCAAGAAGCACCACGGTAAGCGCGGGGGACACGGCCACAGCCACAAGGAGAACCTGGTGCCCAGCTCGTTGGCA GACATTGTCAAGAGGACGCCGTCGCCGGCGCCCGGGTCGTCGCGGCCCGAATCGAGGAAGTCGTGCCAAAACGGA GGTGGAGCGGTGGTGCCGCTGCGCAACGGCGAGAACAGCGCGGCGTCGCAGGCGATCCCCAGCCCCAAGAACATA CCCTGGCTGGAGACGGGCGACCGGGCGAACAAGGCGTATCTGAAGGCCCGCCAGGAGGCTATCAAGCACGGCGGG CTCCGGAACAAGTTCCTGCAGAGGTACGTCGGCTGCGGCCAGCCATGCTCACCCACCCACACCCGACACGGCCGG GGGCTAAAGCGGGAGGCGGCAGTGCGGCGCAAGCGTGGAACCGCAACGACGCGAGGGCGGCCAAGGCGCTGAGCC TGCGAGGCCAGAGCGAGAACGACCTGATGCGAAAGGCGCACCGCGAGGCGGCGCGCGAGCTGTACGAGCAGCGGA ACAAGGGCGGCATGGGCAGCGGGTCGGAGACATACGTGGACCTCCACGGCCTCCACCCGGAGGAGGCGGTCGACT ACCTGGAGAAGGTGCTGACGGAGAACGGCAAACAGGCGCGGCCGGTGTACGCCATCACGGGCACGGGGCACCACA GCAAGAACGGCAAGGACAAGGTGGGCAAGGCGATCCGCAACTTTCTCAACGAGTGGCGGTACGCCTACCGCGAGT TCTCGGTGCCCGGGGACCGCAACAGCATGGGCGGCATCCTGGGCATCGACGCGCGCAGCCGGGACAAGTCGCGGG CGCGGGAGCGCGAGGACAGCAAGAACGAGGTCGACATTCTCAGCCAGGGCGTCGAGATCGGGGACGGCAAGGTGC GGCTGCTGGTGCGCGACCCGCCCAAGGGGCCGAGCAGCCGCCGATGA |