© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5392 |
| Gene name | |
| Location | Contig_27:25882..27718 |
| Strand | + |
| Gene length (bp) | 1836 |
| Transcript length (bp) | 1737 |
| Coding sequence length (bp) | 1737 |
| Protein length (aa) | 579 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04506 | Rft-1 | Rft protein | 1.1E-141 | 6 | 567 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6C6S3|RFT1_YARLI | Oligosaccharide translocation protein RFT1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RFT1 PE=3 SV=1 | 9 | 520 | 2.0E-82 |
| sp|Q754Q7|RFT1_ASHGO | Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RFT1 PE=3 SV=1 | 8 | 565 | 2.0E-67 |
| sp|P38206|RFT1_YEAST | Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1 SV=1 | 9 | 495 | 5.0E-67 |
| sp|Q5A6N8|RFT1_CANAL | Oligosaccharide translocation protein RFT1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RFT1 PE=3 SV=1 | 3 | 509 | 1.0E-63 |
| sp|P40913|RFT1_KLULA | Oligosaccharide translocation protein RFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RFT1 PE=3 SV=2 | 8 | 525 | 2.0E-63 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6C6S3|RFT1_YARLI | Oligosaccharide translocation protein RFT1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RFT1 PE=3 SV=1 | 9 | 520 | 2.0E-82 |
| sp|Q754Q7|RFT1_ASHGO | Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RFT1 PE=3 SV=1 | 8 | 565 | 2.0E-67 |
| sp|P38206|RFT1_YEAST | Oligosaccharide translocation protein RFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFT1 PE=1 SV=1 | 9 | 495 | 5.0E-67 |
| sp|Q5A6N8|RFT1_CANAL | Oligosaccharide translocation protein RFT1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=RFT1 PE=3 SV=1 | 3 | 509 | 1.0E-63 |
| sp|P40913|RFT1_KLULA | Oligosaccharide translocation protein RFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RFT1 PE=3 SV=2 | 8 | 525 | 2.0E-63 |
| sp|Q6FPE8|RFT1_CANGA | Oligosaccharide translocation protein RFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RFT1 PE=3 SV=1 | 8 | 565 | 4.0E-59 |
| sp|O94302|RFT1_SCHPO | Oligosaccharide translocation protein rft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rft1 PE=3 SV=1 | 14 | 512 | 1.0E-53 |
| sp|Q96AA3|RFT1_HUMAN | Protein RFT1 homolog OS=Homo sapiens GN=RFT1 PE=1 SV=1 | 14 | 496 | 2.0E-36 |
| sp|Q0D2E8|RFT1_XENTR | Protein RFT1 homolog OS=Xenopus tropicalis GN=rft1 PE=2 SV=1 | 10 | 562 | 8.0E-35 |
| sp|Q8C3B8|RFT1_MOUSE | Protein RFT1 homolog OS=Mus musculus GN=Rft1 PE=2 SV=2 | 14 | 496 | 1.0E-32 |
| sp|Q54IV7|RFT1_DICDI | Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1 | 9 | 481 | 2.0E-24 |
| sp|Q9Y123|RFT1_DROME | Protein RFT1 homolog OS=Drosophila melanogaster GN=CG3149 PE=2 SV=1 | 273 | 518 | 4.0E-22 |
| sp|Q23444|RFT1_CAEEL | Protein RFT1 homolog OS=Caenorhabditis elegans GN=ZK180.3 PE=3 SV=1 | 17 | 504 | 1.0E-19 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0006488 | dolichol-linked oligosaccharide biosynthetic process | Yes |
| GO:0044237 | cellular metabolic process | No |
| GO:0006490 | oligosaccharide-lipid intermediate biosynthetic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006629 | lipid metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0044255 | cellular lipid metabolic process | No |
| GO:0005575 | cellular_component | No |
| GO:1901135 | carbohydrate derivative metabolic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:1901137 | carbohydrate derivative biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 28 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 35 | 57 | 22 |
| 2 | 112 | 134 | 22 |
| 3 | 156 | 178 | 22 |
| 4 | 190 | 212 | 22 |
| 5 | 222 | 244 | 22 |
| 6 | 376 | 398 | 22 |
| 7 | 411 | 433 | 22 |
| 8 | 446 | 463 | 17 |
| 9 | 468 | 490 | 22 |
| 10 | 503 | 525 | 22 |
| 11 | 535 | 557 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5392 MAASSMVQGASLLVLLQLLSRLTSFAANQLLVRLLTARLLGLATQLDVLYLSVLFFARESLRVAIQRQAPSPPAI RPAAAEVGGDKARDATEAKRREEQREREDERRGAQAVVNLGYLPVLVGAVVAVVLARLYRAYLVVDSSSSLGDDD GQPPQLVLALGLYALAAWVELLSEPCFVLMHTRLRFGTRAAAESAATLTRCLVVLGAALWASSEEEGGGRGVVGV LPFALGQLAYGLALLLVYLVAGRRLAAQLGFSLLPRRLGGGKGFVLGYFDAPALRLAASITAQSVVKHVLTQGDT FLVSLLAEAEVQGVYALANNYGGLLARLLFQPVEESCRSYFSRLLSSSSPAAAAASSRSPAAVEARRSLATLSRL YLVLSAAVVAVGPFAAPALLAVVAGSRWTAVGAGRVLATYCFYVPFLALNGLAESFVASVASERQLHRQSLWMGA FSVAFAAAAYVLMRLYPLGAHGLVLANVVNMLCRILWSTAFVKTFFAARRLDFSLASLLPGPTIAASLATFAALV QLHDLDEAGARPFVTLAKVAASAVPLLLVIGFSERTLLLECFHSVRGREFAKP* |
| Coding | >Hirsu2|5392 ATGGCGGCGTCGTCGATGGTGCAGGGCGCGTCGCTGCTCGTGCTGCTGCAGCTGCTGTCGCGGCTGACGAGCTTC GCGGCCAACCAGCTGCTCGTGCGGCTGCTGACGGCGCGGCTGCTGGGGCTGGCGACGCAGCTCGACGTGCTGTAC CTGTCGGTCCTGTTCTTCGCGCGCGAGAGCCTGCGCGTCGCAATCCAGCGCCAGGCGCCGTCGCCGCCCGCGATC CGCCCTGCCGCTGCCGAGGTCGGTGGCGATAAGGCGCGGGACGCGACGGAGGCGAAAAGGAGAGAAGAGCAGAGG GAGAGGGAAGACGAGAGGCGGGGCGCCCAGGCCGTCGTCAACCTCGGCTACCTCCCCGTCTTGGTCGGCGCCGTC GTCGCCGTCGTCCTCGCCCGCCTCTACCGCGCCTACCTCGTCGTCGACAGCAGCAGCAGCCTCGGCGACGACGAT GGCCAGCCGCCGCAGCTGGTGCTCGCTCTTGGCCTCTACGCCCTCGCCGCCTGGGTCGAGCTCCTGTCGGAGCCG TGCTTTGTGCTGATGCACACGCGCCTGCGCTTCGGCACCCGCGCCGCCGCCGAGTCGGCCGCGACGCTGACGCGC TGCCTCGTCGTCCTTGGCGCCGCCCTGTGGGCTTCCTCGGAGGAGGAGGGGGGGGGCCGCGGCGTCGTCGGCGTC TTGCCCTTTGCCCTCGGCCAGCTGGCGTACGGGCTGGCGCTGCTGCTCGTCTACCTCGTCGCCGGCCGCCGGCTC GCCGCCCAGCTCGGCTTCTCCCTTTTGCCTAGGCGCCTGGGCGGCGGCAAAGGCTTCGTGCTCGGCTACTTCGAC GCGCCCGCGCTGCGGCTGGCGGCCAGCATCACGGCCCAGAGCGTCGTCAAGCACGTCCTCACCCAGGGCGACACC TTCCTCGTCTCGCTGCTGGCCGAGGCCGAGGTGCAGGGCGTCTACGCCCTCGCCAACAACTACGGCGGCCTGCTG GCCCGGCTGCTGTTCCAGCCGGTCGAGGAGAGTTGCCGCAGCTACTTCTCGCGCCTGCTGTCCTCGTCGTCGCCC GCCGCCGCCGCCGCCTCCTCCAGGTCGCCCGCCGCCGTCGAGGCCCGCCGCAGCCTCGCCACCCTGTCAAGGCTG TACCTCGTCCTCTCGGCCGCCGTCGTCGCCGTCGGGCCCTTCGCCGCTCCGGCCCTCCTGGCCGTCGTCGCCGGC AGCCGCTGGACCGCCGTCGGCGCCGGCCGCGTCCTCGCCACCTACTGCTTCTACGTGCCCTTCCTCGCCCTCAAC GGCCTGGCCGAGTCCTTCGTCGCGTCCGTCGCGTCGGAGCGCCAGCTCCACCGTCAGTCGCTCTGGATGGGCGCC TTCTCCGTCGCCTTCGCCGCCGCCGCCTACGTCCTCATGCGCCTTTACCCGCTCGGCGCCCACGGCCTCGTCCTC GCCAACGTCGTCAACATGCTGTGCCGCATTCTGTGGAGCACCGCCTTCGTCAAGACCTTCTTCGCCGCCCGCCGC CTCGACTTCTCCCTCGCCTCGCTGCTGCCCGGCCCGACCATTGCCGCCTCGCTCGCCACCTTTGCCGCTCTCGTC CAGCTGCATGACCTGGACGAGGCCGGCGCCAGGCCCTTTGTCACTCTCGCCAAGGTCGCGGCCTCGGCGGTGCCC TTACTGCTCGTCATAGGTTTCTCCGAGAGGACTCTTCTCCTCGAGTGCTTTCACTCGGTACGCGGCCGGGAATTC GCCAAGCCGTGA |
| Transcript | >Hirsu2|5392 ATGGCGGCGTCGTCGATGGTGCAGGGCGCGTCGCTGCTCGTGCTGCTGCAGCTGCTGTCGCGGCTGACGAGCTTC GCGGCCAACCAGCTGCTCGTGCGGCTGCTGACGGCGCGGCTGCTGGGGCTGGCGACGCAGCTCGACGTGCTGTAC CTGTCGGTCCTGTTCTTCGCGCGCGAGAGCCTGCGCGTCGCAATCCAGCGCCAGGCGCCGTCGCCGCCCGCGATC CGCCCTGCCGCTGCCGAGGTCGGTGGCGATAAGGCGCGGGACGCGACGGAGGCGAAAAGGAGAGAAGAGCAGAGG GAGAGGGAAGACGAGAGGCGGGGCGCCCAGGCCGTCGTCAACCTCGGCTACCTCCCCGTCTTGGTCGGCGCCGTC GTCGCCGTCGTCCTCGCCCGCCTCTACCGCGCCTACCTCGTCGTCGACAGCAGCAGCAGCCTCGGCGACGACGAT GGCCAGCCGCCGCAGCTGGTGCTCGCTCTTGGCCTCTACGCCCTCGCCGCCTGGGTCGAGCTCCTGTCGGAGCCG TGCTTTGTGCTGATGCACACGCGCCTGCGCTTCGGCACCCGCGCCGCCGCCGAGTCGGCCGCGACGCTGACGCGC TGCCTCGTCGTCCTTGGCGCCGCCCTGTGGGCTTCCTCGGAGGAGGAGGGGGGGGGCCGCGGCGTCGTCGGCGTC TTGCCCTTTGCCCTCGGCCAGCTGGCGTACGGGCTGGCGCTGCTGCTCGTCTACCTCGTCGCCGGCCGCCGGCTC GCCGCCCAGCTCGGCTTCTCCCTTTTGCCTAGGCGCCTGGGCGGCGGCAAAGGCTTCGTGCTCGGCTACTTCGAC GCGCCCGCGCTGCGGCTGGCGGCCAGCATCACGGCCCAGAGCGTCGTCAAGCACGTCCTCACCCAGGGCGACACC TTCCTCGTCTCGCTGCTGGCCGAGGCCGAGGTGCAGGGCGTCTACGCCCTCGCCAACAACTACGGCGGCCTGCTG GCCCGGCTGCTGTTCCAGCCGGTCGAGGAGAGTTGCCGCAGCTACTTCTCGCGCCTGCTGTCCTCGTCGTCGCCC GCCGCCGCCGCCGCCTCCTCCAGGTCGCCCGCCGCCGTCGAGGCCCGCCGCAGCCTCGCCACCCTGTCAAGGCTG TACCTCGTCCTCTCGGCCGCCGTCGTCGCCGTCGGGCCCTTCGCCGCTCCGGCCCTCCTGGCCGTCGTCGCCGGC AGCCGCTGGACCGCCGTCGGCGCCGGCCGCGTCCTCGCCACCTACTGCTTCTACGTGCCCTTCCTCGCCCTCAAC GGCCTGGCCGAGTCCTTCGTCGCGTCCGTCGCGTCGGAGCGCCAGCTCCACCGTCAGTCGCTCTGGATGGGCGCC TTCTCCGTCGCCTTCGCCGCCGCCGCCTACGTCCTCATGCGCCTTTACCCGCTCGGCGCCCACGGCCTCGTCCTC GCCAACGTCGTCAACATGCTGTGCCGCATTCTGTGGAGCACCGCCTTCGTCAAGACCTTCTTCGCCGCCCGCCGC CTCGACTTCTCCCTCGCCTCGCTGCTGCCCGGCCCGACCATTGCCGCCTCGCTCGCCACCTTTGCCGCTCTCGTC CAGCTGCATGACCTGGACGAGGCCGGCGCCAGGCCCTTTGTCACTCTCGCCAAGGTCGCGGCCTCGGCGGTGCCC TTACTGCTCGTCATAGGTTTCTCCGAGAGGACTCTTCTCCTCGAGTGCTTTCACTCGGTACGCGGCCGGGAATTC GCCAAGCCGTGA |
| Gene | >Hirsu2|5392 ATGGCGGCGTCGTCGATGGTGCAGGGCGCGTCGCTGCTCGTGCTGCTGCAGCTGCTGTCGCGGCTGACGAGCTTC GCGGCCAACCAGCTGCTCGTGCGGCTGCTGACGGCGCGGCTGCTGGGGCTGGCGACGCAGCTCGACGTGCTGTAC CTGTCGGTCCTGTTCTTCGCGCGCGAGAGCCTGCGCGTCGCAATCCAGCGCCAGGCGCCGTCGCCGCCCGCGATC CGCCCTGCCGCTGCCGAGGTCGGTGGCGATAAGGCGCGGGACGCGACGGAGGCGAAAAGGAGAGAAGAGCAGAGG GAGAGGGAAGACGAGAGGCGGGGCGCCCAGGCCGTCGTCAACCTCGGCTACCTCCCCGTCTTGGTCGGCGCCGTC GTCGCCGTCGTCCTCGCCCGCCTCTACCGCGCCTACCTCGTCGTCGACAGCAGCAGCAGCCTCGGCGACGACGAT GGCCAGCCGCCGCAGCTGGTGCTCGCTCTTGGCCTCTACGCCCTCGCCGCCTGGGTCGAGCTCCTGTCGGAGCCG TGCTTTGTGCTGATGCACACGCGCCTGCGCTTCGGCACCCGCGCCGCCGCCGAGTCGGCCGCGACGCTGACGCGC TGCCTCGTCGTCCTTGGCGCCGCCCTGTGGGCTTCCTCGGAGGAGGAGGGGGGGGGCCGCGGCGTCGTCGGCGTC TTGCCCTTTGCCCTCGGCCAGCTGGCGTACGGGCTGGCGCTGCTGCTCGTCTACCTCGTCGCCGGCCGCCGGCTC GCCGCCCAGCTCGGCTTCTCCCTTTTGCCTAGGCGCCTGGGCGGCGGCAAAGGCTTCGTGCTCGGCTACTTCGAC GCGCCCGCGCTGCGGCTGGCGGCCAGCATCACGGCCCAGAGCGTCGTCAAGCACGTCCTCACCCAGGGCGACACC TTCCTCGTCTCGCTGCTGGCCGAGGCCGAGGTGCAGGGCGTCTACGCCCTCGCCAACAACTACGGCGGCCTGCTG GCCCGGCTGCTGTTCCAGCCGGTCGAGGAGAGTTGCCGCAGCTACTTCTCGCGCCTGCTGTCCTCGTCGTCGCCC GCCGCCGCCGCCGCCTCCTCCAGGTCGCCCGCCGCCGTCGAGGCCCGCCGCAGCCTCGCCACCCTGTCAAGGCTG TACCTCGTCCTCTCGGCCGCCGTCGTCGCCGTCGGGCCCTTCGCCGCTCCGGCCCTCCTGGCCGTCGTCGCCGGC AGCCGCTGGACCGCCGTCGGCGCCGGCCGCGTCCTCGCCACCTACTGCTTCTACGTGCCCTTCCTCGCCCTCAAC GGCCTGGCCGAGTCCTTCGTCGCGTCCGTCGCGTCGGAGCGCCAGCTCCACCGTCAGTCGCTCTGGATGGGCGCC TTCTCCGTCGCCTTCGCCGCCGCCGCCTACGTCCTCATGCGCCTTTACCCGCTCGGCGCCCACGGCCTCGTCCTC GCCAACGTCGTCAACATGCTGTGCCGCATTCTGTGGAGCACCGCCTTCGTCAAGACCTTCTTCGCCGCCCGCCGC CTCGACTTCTCCCTCGCCTCGCTGCTGCCCGGCCCGACCATTGCCGCCTCGCTCGCCACCTTTGCCGCTCTCGTC CAGCTGCATGACCTGGACGAGGCCGGCGCCAGGCCCTTTGTCACTCTCGCCAAGGTCGCGGCCTCGGCGGTGCCC TTACTGCTCGTCATGTACGTGGTTTTCGAACGCTTCCCTCTTTTATTTTCCCTTTCCGCAGCCATATATGAACAT GCATCTATGTACCGCCCCTCTAACCAATTCGCGAACAGAGGTTTCTCCGAGAGGACTCTTCTCCTCGAGTGCTTT CACTCGGTACGCGGCCGGGAATTCGCCAAGCCGTGA |