© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5391 |
| Gene name | |
| Location | Contig_27:22918..24752 |
| Strand | + |
| Gene length (bp) | 1834 |
| Transcript length (bp) | 1725 |
| Coding sequence length (bp) | 1725 |
| Protein length (aa) | 575 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03055 | RPE65 | Retinal pigment epithelial membrane protein | 2.5E-114 | 43 | 571 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9JJS6|BCDO1_MOUSE | Beta,beta-carotene 15,15'-dioxygenase OS=Mus musculus GN=Bco1 PE=1 SV=2 | 45 | 571 | 1.0E-41 |
| sp|Q91XT5|BCDO1_RAT | Beta,beta-carotene 15,15'-dioxygenase OS=Rattus norvegicus GN=Bco1 PE=2 SV=1 | 45 | 571 | 2.0E-41 |
| sp|Q9HAY6|BCDO1_HUMAN | Beta,beta-carotene 15,15'-dioxygenase OS=Homo sapiens GN=BCO1 PE=1 SV=1 | 45 | 568 | 2.0E-39 |
| sp|Q9YGX2|RPE65_CHICK | Retinoid isomerohydrolase OS=Gallus gallus GN=RPE65 PE=1 SV=1 | 41 | 568 | 2.0E-39 |
| sp|A9C3R8|RP65C_DANRE | Retinal Mueller cells isomerohydrolase OS=Danio rerio GN=rpe65c PE=1 SV=1 | 41 | 571 | 2.0E-38 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9JJS6|BCDO1_MOUSE | Beta,beta-carotene 15,15'-dioxygenase OS=Mus musculus GN=Bco1 PE=1 SV=2 | 45 | 571 | 1.0E-41 |
| sp|Q91XT5|BCDO1_RAT | Beta,beta-carotene 15,15'-dioxygenase OS=Rattus norvegicus GN=Bco1 PE=2 SV=1 | 45 | 571 | 2.0E-41 |
| sp|Q9HAY6|BCDO1_HUMAN | Beta,beta-carotene 15,15'-dioxygenase OS=Homo sapiens GN=BCO1 PE=1 SV=1 | 45 | 568 | 2.0E-39 |
| sp|Q9YGX2|RPE65_CHICK | Retinoid isomerohydrolase OS=Gallus gallus GN=RPE65 PE=1 SV=1 | 41 | 568 | 2.0E-39 |
| sp|A9C3R8|RP65C_DANRE | Retinal Mueller cells isomerohydrolase OS=Danio rerio GN=rpe65c PE=1 SV=1 | 41 | 571 | 2.0E-38 |
| sp|Q9XT71|RPE65_CHLAE | Retinoid isomerohydrolase OS=Chlorocebus aethiops GN=RPE65 PE=2 SV=3 | 41 | 568 | 3.0E-38 |
| sp|Q16518|RPE65_HUMAN | Retinoid isomerohydrolase OS=Homo sapiens GN=RPE65 PE=1 SV=3 | 41 | 568 | 3.0E-38 |
| sp|Q91ZQ5|RPE65_MOUSE | Retinoid isomerohydrolase OS=Mus musculus GN=Rpe65 PE=1 SV=4 | 41 | 568 | 5.0E-38 |
| sp|A9C3R9|RP65B_DANRE | All-trans-retinyl ester 13-cis isomerohydrolase OS=Danio rerio GN=rpe65b PE=1 SV=1 | 41 | 571 | 7.0E-38 |
| sp|Q9I993|BCDO1_CHICK | Beta,beta-carotene 15,15'-dioxygenase OS=Gallus gallus GN=BCO1 PE=1 SV=1 | 45 | 571 | 8.0E-38 |
| sp|O70276|RPE65_RAT | Retinoid isomerohydrolase OS=Rattus norvegicus GN=Rpe65 PE=2 SV=4 | 41 | 568 | 1.0E-37 |
| sp|Q99NF1|BCDO2_MOUSE | Beta,beta-carotene 9',10'-oxygenase OS=Mus musculus GN=Bco2 PE=1 SV=1 | 45 | 572 | 3.0E-37 |
| sp|Q6PBW5|RP65A_DANRE | Retinoid isomerohydrolase OS=Danio rerio GN=rpe65a PE=2 SV=1 | 41 | 571 | 4.0E-37 |
| sp|Q28175|RPE65_BOVIN | Retinoid isomerohydrolase OS=Bos taurus GN=RPE65 PE=1 SV=3 | 41 | 568 | 6.0E-37 |
| sp|Q9TVB8|RPE65_CANLF | Retinoid isomerohydrolase OS=Canis lupus familiaris GN=RPE65 PE=1 SV=3 | 41 | 568 | 8.0E-37 |
| sp|Q9YI25|RPE65_AMBTI | Retinoid isomerohydrolase OS=Ambystoma tigrinum GN=RPE65 PE=2 SV=3 | 41 | 567 | 7.0E-36 |
| sp|Q8AXN9|RPE65_CYNPY | Retinoid isomerohydrolase OS=Cynops pyrrhogaster GN=RPE65 PE=2 SV=3 | 41 | 569 | 3.0E-35 |
| sp|A8Y9I2|NINAB_GALME | Carotenoid isomerooxygenase OS=Galleria mellonella GN=ninaB PE=1 SV=1 | 45 | 571 | 1.0E-33 |
| sp|Q8HXG8|BCDO2_MACFA | Beta,beta-carotene 9',10'-oxygenase OS=Macaca fascicularis GN=BCO2 PE=2 SV=2 | 44 | 572 | 5.0E-32 |
| sp|Q5RF16|BCDO2_PONAB | Beta,beta-carotene 9',10'-oxygenase OS=Pongo abelii GN=BCO2 PE=2 SV=1 | 44 | 572 | 9.0E-32 |
| sp|Q9BYV7|BCDO2_HUMAN | Beta,beta-carotene 9',10'-oxygenase OS=Homo sapiens GN=BCO2 PE=1 SV=5 | 44 | 572 | 3.0E-31 |
| sp|Q8VY26|CCD8_ARATH | Carotenoid cleavage dioxygenase 8, chloroplastic OS=Arabidopsis thaliana GN=CCD8 PE=1 SV=1 | 38 | 571 | 1.0E-27 |
| sp|Q8LIY8|CCD8B_ORYSJ | Carotenoid cleavage dioxygenase 8 homolog B, chloroplastic OS=Oryza sativa subsp. japonica GN=CCD8B PE=1 SV=1 | 53 | 571 | 1.0E-24 |
| sp|Q93VD5|CCD8A_ORYSJ | Carotenoid cleavage dioxygenase 8 homolog A, chloroplastic OS=Oryza sativa subsp. japonica GN=CCD8A PE=2 SV=1 | 53 | 571 | 1.0E-23 |
| sp|P74334|ACOX_SYNY3 | Apocarotenoid-15,15'-oxygenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1541 PE=1 SV=1 | 55 | 549 | 3.0E-19 |
| sp|C3VEQ4|CCD1_ONCHC | Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Oncidium hybrid cultivar GN=CCD1 PE=2 SV=1 | 53 | 568 | 3.0E-18 |
| sp|Q8LP17|CCD1_PEA | Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1 | 36 | 568 | 4.0E-17 |
| sp|Q94IR2|CCD1_PHAVU | Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1 | 53 | 568 | 8.0E-17 |
| sp|Q84KG5|CCD_CROSA | Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1 | 53 | 568 | 2.0E-15 |
| sp|Q7XU29|CCD7_ORYSJ | Carotenoid cleavage dioxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CCD7 PE=1 SV=2 | 357 | 568 | 3.0E-10 |
| sp|Q9VFS2|NINAB_DROME | Carotenoid isomerooxygenase OS=Drosophila melanogaster GN=ninaB PE=1 SV=1 | 466 | 571 | 5.0E-10 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | Yes |
| GO:0055114 | oxidation-reduction process | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0008152 | metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| GO:0051213 | dioxygenase activity | No |
| GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | No |
| GO:0003824 | catalytic activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 43 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5391 MAVNASGVLHRTAQNEVQDKEQSFRNVEDESWKDWPNHAGFEGLEEHRGPLKLRVKGSIPAWAAGSLYRTGPGQS SVEDTSRGTHYVSHWFDGFAHTHKFDIVAPGEDGEETAVIYSSRRQSEDHVAQIKKTGWRSSTSFGQKADPCIGI FAKFMSFFVPRRLNNNVACLPNFPGLQDNGPVSNQSGHRTGTSNIYISTDHCALQEISPDTLEPLGFVNQQRLHP DLDGVLSCAHAQRDHETGDWFNFNLALGRQATYRVFRVNAILGTTDLLATISEPDLAAAYMHSFFLTENYVVLCI PSSHFGWKGLKIMWEKNLLDAIKPFDEKRRCQWVVVDRKNDQGVVARFSTPAGFFFHSVNAFEELTKDETGSKRV DLCLDHTMYDNTDIMFGLYYDVILDRKDAMREFVASGRHKTWQSRHVRYRFRMPVSGQTREEARAATAEQVFSIA SPHSGELSTIHPGRTGRSYRYVYGTSNRGLSTFMDAIVKTDLDTHDAVLWSGPQAHTPGEPVFVPRPGGTDEDDG VVLSVVLDGTAQRSYLLCLDARTMEETGRAEADFPIALGFHGFHAPVVT* |
| Coding | >Hirsu2|5391 ATGGCGGTCAACGCATCCGGCGTTCTCCACCGCACCGCCCAGAACGAGGTCCAAGACAAAGAACAGTCGTTTCGC AACGTCGAAGACGAGTCGTGGAAAGACTGGCCCAACCATGCCGGCTTTGAGGGCCTCGAGGAACACCGAGGTCCG CTGAAGCTTCGCGTTAAGGGCTCCATCCCGGCCTGGGCTGCGGGCTCGCTATACCGAACAGGCCCCGGCCAGAGC AGCGTCGAGGACACGTCCCGCGGGACGCACTACGTATCGCACTGGTTTGACGGCTTTGCCCACACCCACAAGTTC GACATCGTGGCCCCGGGCGAGGACGGCGAGGAGACGGCCGTCATCTACTCGTCGCGGCGGCAGTCCGAAGACCAC GTCGCCCAGATCAAGAAGACGGGCTGGCGCTCAAGCACCTCGTTTGGACAAAAAGCCGACCCCTGCATCGGCATC TTCGCCAAATTCATGAGTTTTTTTGTGCCGCGCCGGCTGAACAACAATGTCGCCTGCCTGCCCAACTTCCCTGGC CTGCAGGACAACGGGCCGGTGAGCAACCAGAGCGGCCATCGGACGGGGACGAGCAACATCTACATCAGCACAGAC CACTGCGCCTTGCAGGAAATAAGCCCGGACACCCTGGAGCCCCTAGGATTCGTGAACCAGCAGCGCCTTCACCCG GACCTCGACGGCGTCTTGTCCTGCGCACACGCCCAGCGGGACCACGAGACGGGAGATTGGTTCAACTTCAACCTG GCCCTGGGCCGCCAGGCAACGTACCGCGTGTTTCGCGTAAACGCAATCCTTGGCACCACCGACCTCCTCGCCACC ATCTCGGAGCCTGACTTGGCGGCCGCGTACATGCACAGCTTCTTCCTGACGGAGAACTATGTCGTGCTCTGCATC CCGTCCAGCCACTTCGGATGGAAAGGGCTCAAGATCATGTGGGAGAAGAACCTGCTGGATGCCATCAAGCCCTTT GACGAGAAGCGGCGGTGCCAGTGGGTGGTCGTGGACCGAAAGAACGACCAGGGCGTGGTCGCGCGCTTCTCGACG CCCGCCGGCTTCTTCTTCCACTCGGTCAACGCGTTCGAGGAGCTCACTAAGGACGAGACTGGCTCGAAGCGAGTG GACCTGTGCCTGGACCACACCATGTACGACAACACGGACATCATGTTCGGCCTCTACTACGATGTCATTCTGGAC CGCAAAGATGCCATGAGGGAGTTTGTCGCGAGCGGACGGCACAAGACGTGGCAAAGTCGCCATGTGCGGTACCGC TTCAGGATGCCCGTGTCGGGGCAGACGCGAGAGGAGGCCCGAGCGGCGACGGCCGAGCAGGTCTTTTCGATTGCC AGCCCACATTCGGGGGAGCTGTCGACGATCCACCCCGGGCGGACGGGGCGGTCCTACCGATACGTATACGGGACG AGCAACCGCGGGCTCAGCACTTTCATGGACGCGATCGTCAAGACAGATTTGGACACACACGATGCAGTCCTGTGG AGCGGTCCGCAGGCGCACACGCCGGGCGAGCCCGTCTTTGTGCCACGGCCCGGTGGAACAGACGAGGACGATGGG GTCGTCCTGAGCGTCGTTCTGGACGGCACTGCGCAGAGGTCGTATCTGCTGTGCCTGGACGCGAGGACGATGGAG GAGACGGGGAGAGCCGAGGCCGACTTCCCCATCGCGCTCGGGTTCCATGGATTCCACGCGCCCGTCGTGACTTGA |
| Transcript | >Hirsu2|5391 ATGGCGGTCAACGCATCCGGCGTTCTCCACCGCACCGCCCAGAACGAGGTCCAAGACAAAGAACAGTCGTTTCGC AACGTCGAAGACGAGTCGTGGAAAGACTGGCCCAACCATGCCGGCTTTGAGGGCCTCGAGGAACACCGAGGTCCG CTGAAGCTTCGCGTTAAGGGCTCCATCCCGGCCTGGGCTGCGGGCTCGCTATACCGAACAGGCCCCGGCCAGAGC AGCGTCGAGGACACGTCCCGCGGGACGCACTACGTATCGCACTGGTTTGACGGCTTTGCCCACACCCACAAGTTC GACATCGTGGCCCCGGGCGAGGACGGCGAGGAGACGGCCGTCATCTACTCGTCGCGGCGGCAGTCCGAAGACCAC GTCGCCCAGATCAAGAAGACGGGCTGGCGCTCAAGCACCTCGTTTGGACAAAAAGCCGACCCCTGCATCGGCATC TTCGCCAAATTCATGAGTTTTTTTGTGCCGCGCCGGCTGAACAACAATGTCGCCTGCCTGCCCAACTTCCCTGGC CTGCAGGACAACGGGCCGGTGAGCAACCAGAGCGGCCATCGGACGGGGACGAGCAACATCTACATCAGCACAGAC CACTGCGCCTTGCAGGAAATAAGCCCGGACACCCTGGAGCCCCTAGGATTCGTGAACCAGCAGCGCCTTCACCCG GACCTCGACGGCGTCTTGTCCTGCGCACACGCCCAGCGGGACCACGAGACGGGAGATTGGTTCAACTTCAACCTG GCCCTGGGCCGCCAGGCAACGTACCGCGTGTTTCGCGTAAACGCAATCCTTGGCACCACCGACCTCCTCGCCACC ATCTCGGAGCCTGACTTGGCGGCCGCGTACATGCACAGCTTCTTCCTGACGGAGAACTATGTCGTGCTCTGCATC CCGTCCAGCCACTTCGGATGGAAAGGGCTCAAGATCATGTGGGAGAAGAACCTGCTGGATGCCATCAAGCCCTTT GACGAGAAGCGGCGGTGCCAGTGGGTGGTCGTGGACCGAAAGAACGACCAGGGCGTGGTCGCGCGCTTCTCGACG CCCGCCGGCTTCTTCTTCCACTCGGTCAACGCGTTCGAGGAGCTCACTAAGGACGAGACTGGCTCGAAGCGAGTG GACCTGTGCCTGGACCACACCATGTACGACAACACGGACATCATGTTCGGCCTCTACTACGATGTCATTCTGGAC CGCAAAGATGCCATGAGGGAGTTTGTCGCGAGCGGACGGCACAAGACGTGGCAAAGTCGCCATGTGCGGTACCGC TTCAGGATGCCCGTGTCGGGGCAGACGCGAGAGGAGGCCCGAGCGGCGACGGCCGAGCAGGTCTTTTCGATTGCC AGCCCACATTCGGGGGAGCTGTCGACGATCCACCCCGGGCGGACGGGGCGGTCCTACCGATACGTATACGGGACG AGCAACCGCGGGCTCAGCACTTTCATGGACGCGATCGTCAAGACAGATTTGGACACACACGATGCAGTCCTGTGG AGCGGTCCGCAGGCGCACACGCCGGGCGAGCCCGTCTTTGTGCCACGGCCCGGTGGAACAGACGAGGACGATGGG GTCGTCCTGAGCGTCGTTCTGGACGGCACTGCGCAGAGGTCGTATCTGCTGTGCCTGGACGCGAGGACGATGGAG GAGACGGGGAGAGCCGAGGCCGACTTCCCCATCGCGCTCGGGTTCCATGGATTCCACGCGCCCGTCGTGACTTGA |
| Gene | >Hirsu2|5391 ATGGCGGTCAACGCATCCGGCGTTCTCCACCGCACCGCCCAGAACGAGGTCCAAGACAAAGAACAGTCGTTTCGC AACGTCGAAGACGAGTCGTGGAAAGACTGGCCCAACCATGCCGGCGTAAGTTCAGGCCCGCCCACGCGCGCTCAC TCCGTGCCGGCAGCCGTCCTTTGAAGTGGTCTCGGCCTTGCCATGCATACGCCTACTGACGGCATGTCCCCACAC GAAGTTTGAGGGCCTCGAGGAACACCGAGGTCCGCTGAAGCTTCGCGTTAAGGGCTCCATCCCGGCCTGGGCTGC GGGCTCGCTATACCGAACAGGCCCCGGCCAGAGCAGCGTCGAGGACACGTCCCGCGGGACGCACTACGTATCGCA CTGGTTTGACGGCTTTGCCCACACCCACAAGTTCGACATCGTGGCCCCGGGCGAGGACGGCGAGGAGACGGCCGT CATCTACTCGTCGCGGCGGCAGTCCGAAGACCACGTCGCCCAGATCAAGAAGACGGGCTGGCGCTCAAGCACCTC GTTTGGACAAAAAGCCGACCCCTGCATCGGCATCTTCGCCAAATTCATGAGTTTTTTTGTGCCGCGCCGGCTGAA CAACAATGTCGCCTGCCTGCCCAACTTCCCTGGCCTGCAGGACAACGGGCCGGTGAGCAACCAGAGCGGCCATCG GACGGGGACGAGCAACATCTACATCAGCACAGACCACTGCGCCTTGCAGGAAATAAGCCCGGACACCCTGGAGCC CCTAGGATTCGTGAACCAGCAGCGCCTTCACCCGGACCTCGACGGCGTCTTGTCCTGCGCACACGCCCAGCGGGA CCACGAGACGGGAGATTGGTTCAACTTCAACCTGGCCCTGGGCCGCCAGGCAACGTACCGCGTGTTTCGCGTAAA CGCAATCCTTGGCACCACCGACCTCCTCGCCACCATCTCGGAGCCTGACTTGGCGGCCGCGTACATGCACAGCTT CTTCCTGACGGAGAACTATGTCGTGCTCTGCATCCCGTCCAGCCACTTCGGATGGAAAGGGCTCAAGATCATGTG GGAGAAGAACCTGCTGGATGCCATCAAGCCCTTTGACGAGAAGCGGCGGTGCCAGTGGGTGGTCGTGGACCGAAA GAACGACCAGGGCGTGGTCGCGCGCTTCTCGACGCCCGCCGGCTTCTTCTTCCACTCGGTCAACGCGTTCGAGGA GCTCACTAAGGACGAGACTGGCTCGAAGCGAGTGGACCTGTGCCTGGACCACACCATGTACGACAACACGGACAT CATGTTCGGCCTCTACTACGATGTCATTCTGGACCGCAAAGATGCCATGAGGGAGTTTGTCGCGAGCGGACGGCA CAAGACGTGGCAAAGTCGCCATGTGCGGTACCGCTTCAGGATGCCCGTGTCGGGGCAGACGCGAGAGGAGGCCCG AGCGGCGACGGCCGAGCAGGTCTTTTCGATTGCCAGCCCACATTCGGGGGAGCTGTCGACGATCCACCCCGGGCG GACGGGGCGGTCCTACCGATACGTATACGGGACGAGCAACCGCGGGCTCAGCACTTTCATGGACGCGATCGTCAA GACAGATTTGGACACACACGATGCAGTCCTGTGGAGCGGTCCGCAGGCGCACACGCCGGGCGAGCCCGTCTTTGT GCCACGGCCCGGTGGAACAGACGAGGACGATGGGGTCGTCCTGAGCGTCGTTCTGGACGGCACTGCGCAGAGGTC GTATCTGCTGTGCCTGGACGCGAGGACGATGGAGGAGACGGGGAGAGCCGAGGCCGACTTCCCCATCGCGCTCGG GTTCCATGGATTCCACGCGCCCGTCGTGACTTGA |