Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5362
Gene name
LocationContig_2682:57..1667
Strand-
Gene length (bp)1610
Transcript length (bp)1482
Coding sequence length (bp)1482
Protein length (aa) 494

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08572 PRP3 pre-mRNA processing factor 3 (PRP3) 1.1E-68 109 324
PF06544 DUF1115 Protein of unknown function (DUF1115) 7.1E-44 348 487

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q09856|PRP3_SCHPO U4/U5/U6 small nuclear ribonucleoprotein prp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp3 PE=1 SV=1 42 489 6.0E-79
sp|Q2KIA6|PRPF3_BOVIN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Bos taurus GN=PRPF3 PE=2 SV=1 109 489 3.0E-65
sp|Q5ZJ85|PRPF3_CHICK U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus GN=PRPF3 PE=2 SV=1 109 489 4.0E-65
sp|O43395|PRPF3_HUMAN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens GN=PRPF3 PE=1 SV=2 109 489 5.0E-65
sp|Q5R5F1|PRPF3_PONAB U4/U6 small nuclear ribonucleoprotein Prp3 OS=Pongo abelii GN=PRPF3 PE=2 SV=1 109 489 5.0E-65
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q09856|PRP3_SCHPO U4/U5/U6 small nuclear ribonucleoprotein prp3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp3 PE=1 SV=1 42 489 6.0E-79
sp|Q2KIA6|PRPF3_BOVIN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Bos taurus GN=PRPF3 PE=2 SV=1 109 489 3.0E-65
sp|Q5ZJ85|PRPF3_CHICK U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus GN=PRPF3 PE=2 SV=1 109 489 4.0E-65
sp|O43395|PRPF3_HUMAN U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens GN=PRPF3 PE=1 SV=2 109 489 5.0E-65
sp|Q5R5F1|PRPF3_PONAB U4/U6 small nuclear ribonucleoprotein Prp3 OS=Pongo abelii GN=PRPF3 PE=2 SV=1 109 489 5.0E-65
sp|Q922U1|PRPF3_MOUSE U4/U6 small nuclear ribonucleoprotein Prp3 OS=Mus musculus GN=Prpf3 PE=1 SV=1 109 489 7.0E-65
sp|Q03338|PRP3_YEAST U4/U6 small nuclear ribonucleoprotein PRP3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP3 PE=1 SV=1 54 485 1.0E-24
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GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.4083 0.7662 0.0114 0.0114 0.1638 0.0069 0.0088 0.0202 0.0153 0.0055

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5368
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|3325
Ophiocordyceps australis map64 (Brazil) OphauB2|2494
Ophiocordyceps camponoti-floridani Ophcf2|04279
Ophiocordyceps camponoti-rufipedis Ophun1|2100
Ophiocordyceps kimflemingae Ophio5|1131
Ophiocordyceps subramaniannii Hirsu2|5362 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5362
MDTSTSGKLGLSHNIAPRVQKPGSPVDQMAALKARVAAAIGTSKAKGGLNIGLHPALEDISYWKPPVKSRVNSAA
HQNSQFKLTTPPTGLHNASSERAGSSSFESGRVNPYFDDAFASHSNSNKRRESRRLVFNQKGKYIQQGSTLRRQA
ALEAMKKRIAEQTRKVGIDDDLDIEKNFVLGVPPEIEWWDEGLVDGQSYGEADIPTKLKVEPSDSIVTEYVQHPV
ALNPAQDQYEPPAKPMFLTSKEQAKLRRQRRMAQLKEMQAKIRLGLIAAPPSKVKKGNLMRVLGDVAVKDPTAVE
ARVNREITERQTRHVQTNQERQLTKEQKHEKRIENQQKDADRGIHVLVFKIASLANGQHRYKITVNADQLALSGV
CIMHPKFSLVIVEGGIWSVKKYRKLMLHRIDWTENTLFNKHEGDQVTEMEKLQARTQAGPPPASLRNECVLIFQG
EQKSRVFRKWSTKVCDTDAEARNILARAKMENFWTLAKSSIFT*
Coding >Hirsu2|5362
ATGGATACGTCAACGTCGGGCAAACTCGGCCTAAGCCATAATATCGCCCCACGAGTGCAGAAACCTGGCTCTCCC
GTTGATCAGATGGCAGCACTCAAAGCTCGTGTAGCCGCCGCCATTGGCACGAGCAAGGCAAAGGGCGGGTTAAAT
ATTGGCCTTCACCCGGCCCTTGAGGATATAAGCTATTGGAAGCCACCAGTGAAAAGTAGAGTCAACTCTGCAGCT
CACCAGAATTCCCAGTTCAAGCTCACAACCCCGCCCACTGGCTTGCACAATGCCAGCTCAGAACGAGCCGGCTCA
TCAAGCTTCGAAAGTGGGCGAGTTAATCCATATTTCGATGATGCCTTTGCATCCCACTCTAATAGCAACAAACGC
CGAGAGTCCAGGCGATTGGTTTTCAACCAGAAAGGGAAGTACATTCAACAGGGTAGCACCCTGCGCCGGCAGGCG
GCTCTCGAGGCAATGAAGAAGCGGATTGCAGAACAGACTCGAAAAGTCGGCATCGACGACGACCTGGATATTGAA
AAGAACTTCGTGCTCGGGGTTCCTCCGGAAATCGAGTGGTGGGACGAAGGCCTGGTGGATGGGCAAAGCTACGGC
GAGGCTGATATTCCGACCAAGCTCAAAGTAGAACCTTCAGACAGCATTGTGACTGAATACGTTCAACATCCGGTT
GCATTAAACCCAGCCCAAGATCAGTACGAACCTCCGGCTAAACCTATGTTCTTAACGTCGAAAGAGCAGGCTAAA
CTCCGCCGTCAACGACGGATGGCACAGCTCAAGGAGATGCAGGCAAAGATTCGCCTTGGATTGATTGCGGCACCA
CCCTCTAAAGTCAAGAAAGGAAACCTGATGCGTGTTCTTGGCGACGTTGCTGTCAAGGACCCCACCGCAGTTGAA
GCCAGGGTCAATCGCGAGATTACGGAGCGCCAGACGAGGCATGTTCAAACTAACCAAGAGCGACAACTGACTAAG
GAACAAAAACACGAGAAACGTATCGAGAACCAGCAGAAAGATGCCGATAGGGGTATTCACGTTCTGGTTTTCAAA
ATCGCATCCCTGGCCAACGGCCAACATCGATATAAGATTACGGTCAACGCAGATCAACTGGCCCTATCAGGAGTG
TGCATCATGCATCCGAAATTTAGTCTCGTCATAGTGGAAGGCGGAATATGGAGCGTTAAGAAGTACAGAAAACTC
ATGCTGCATCGCATCGATTGGACCGAAAATACTCTATTCAACAAACATGAAGGTGATCAAGTCACGGAAATGGAG
AAACTTCAAGCAAGGACTCAAGCTGGGCCGCCCCCTGCGAGTCTACGAAATGAATGCGTACTTATTTTCCAGGGC
GAACAAAAGTCCCGTGTCTTTCGGAAATGGAGTACTAAAGTATGCGACACCGACGCTGAGGCAAGAAATATACTT
GCTCGCGCCAAGATGGAAAACTTTTGGACTTTAGCTAAGAGCTCTATATTTACATAA
Transcript >Hirsu2|5362
ATGGATACGTCAACGTCGGGCAAACTCGGCCTAAGCCATAATATCGCCCCACGAGTGCAGAAACCTGGCTCTCCC
GTTGATCAGATGGCAGCACTCAAAGCTCGTGTAGCCGCCGCCATTGGCACGAGCAAGGCAAAGGGCGGGTTAAAT
ATTGGCCTTCACCCGGCCCTTGAGGATATAAGCTATTGGAAGCCACCAGTGAAAAGTAGAGTCAACTCTGCAGCT
CACCAGAATTCCCAGTTCAAGCTCACAACCCCGCCCACTGGCTTGCACAATGCCAGCTCAGAACGAGCCGGCTCA
TCAAGCTTCGAAAGTGGGCGAGTTAATCCATATTTCGATGATGCCTTTGCATCCCACTCTAATAGCAACAAACGC
CGAGAGTCCAGGCGATTGGTTTTCAACCAGAAAGGGAAGTACATTCAACAGGGTAGCACCCTGCGCCGGCAGGCG
GCTCTCGAGGCAATGAAGAAGCGGATTGCAGAACAGACTCGAAAAGTCGGCATCGACGACGACCTGGATATTGAA
AAGAACTTCGTGCTCGGGGTTCCTCCGGAAATCGAGTGGTGGGACGAAGGCCTGGTGGATGGGCAAAGCTACGGC
GAGGCTGATATTCCGACCAAGCTCAAAGTAGAACCTTCAGACAGCATTGTGACTGAATACGTTCAACATCCGGTT
GCATTAAACCCAGCCCAAGATCAGTACGAACCTCCGGCTAAACCTATGTTCTTAACGTCGAAAGAGCAGGCTAAA
CTCCGCCGTCAACGACGGATGGCACAGCTCAAGGAGATGCAGGCAAAGATTCGCCTTGGATTGATTGCGGCACCA
CCCTCTAAAGTCAAGAAAGGAAACCTGATGCGTGTTCTTGGCGACGTTGCTGTCAAGGACCCCACCGCAGTTGAA
GCCAGGGTCAATCGCGAGATTACGGAGCGCCAGACGAGGCATGTTCAAACTAACCAAGAGCGACAACTGACTAAG
GAACAAAAACACGAGAAACGTATCGAGAACCAGCAGAAAGATGCCGATAGGGGTATTCACGTTCTGGTTTTCAAA
ATCGCATCCCTGGCCAACGGCCAACATCGATATAAGATTACGGTCAACGCAGATCAACTGGCCCTATCAGGAGTG
TGCATCATGCATCCGAAATTTAGTCTCGTCATAGTGGAAGGCGGAATATGGAGCGTTAAGAAGTACAGAAAACTC
ATGCTGCATCGCATCGATTGGACCGAAAATACTCTATTCAACAAACATGAAGGTGATCAAGTCACGGAAATGGAG
AAACTTCAAGCAAGGACTCAAGCTGGGCCGCCCCCTGCGAGTCTACGAAATGAATGCGTACTTATTTTCCAGGGC
GAACAAAAGTCCCGTGTCTTTCGGAAATGGAGTACTAAAGTATGCGACACCGACGCTGAGGCAAGAAATATACTT
GCTCGCGCCAAGATGGAAAACTTTTGGACTTTAGCTAAGAGCTCTATATTTACATAA
Gene >Hirsu2|5362
ATGGATACGTCAACGTCGGGCAAACTCGGCCTAAGCCATAATATCGCCCCACGAGTGCAGAAACCTGGCTCTCCC
GTTGATCAGATGGCAGCACTCAAAGCTCGTGTAGCCGCCGCCATTGGCACGAGCAAGGCAAAGGGCGGGTTAAAT
ATTGGCCTTCACCCGGCCCTTGAGGATATAAGCTATTGGAAGCCACCAGTGAAAAGTAGAGTCAACTCTGCAGCT
CACCAGAATTCCCAGTTCAAGCTCACAACCCCGCCCACTGGCTTGCACAATGCCAGCTCAGAACGAGCCGGCTCA
TCAAGCTTCGAAAGTGGGCGAGTTAATCCATATTTCGATGATGCCTTTGCATCCCACTCTAATAGCAACAAACGC
CGAGAGTCCAGGCGATTGGTTTTCAACCAGAAAGGGAAGTACATTCAACAGGGTAGCACCCTGCGCCGGCAGGCG
GCTCTCGAGGCAATGAAGAAGCGGATTGCAGAACAGACTCGAAAAGTCGGCATCGACGACGACCTGGATATTGAA
AAGAACTTCGTGCTCGGGGTTCCTCCGGAAATCGAGTGGTGGGACGAAGGCCTGGTGGATGGGCAAAGCTACGGC
GAGGCTGATATTCCGACCAAGCTCAAAGTAGAACCTTCAGACAGCATTGTGACTGAATACGTTCAACATCCGGTT
GCATTAAACCCAGCCCAAGATCAGTACGAACCTCCGGCTAAACCTATGTTCTTAACGTCGAAAGAGCAGGCTAAA
CTCCGCCGTCAACGACGGATGGCACAGCTCAAGGAGATGCAGGCAAAGATTCGCCTTGGATTGATTGCGGCACCA
CCCTCTAAAGTCAAGAAAGGAAACCTGATGCGTGTTCTTGGCGACGGTAGGTACACATCCAGTCTAAACAGGCAA
ATGCGGGGGGGGGGGGGGGGGNNGGGGGTGGGGGGGGTGTGGGGGGGATGGTGGGGTGCATTGAATGTGTCGGGT
TTCGCGAACACTAATCCTTTCTAGTTGCTGTCAAGGACCCCACCGCAGTTGAAGCCAGGGTCAATCGCGAGATTA
CGGAGCGCCAGACGAGGCATGTTCAAACTAACCAAGAGCGACAACTGACTAAGGAACAAAAACACGAGAAACGTA
TCGAGAACCAGCAGAAAGATGCCGATAGGGGTATTCACGTTCTGGTTTTCAAAATCGCATCCCTGGCCAACGGCC
AACATCGATATAAGATTACGGTCAACGCAGATCAACTGGCCCTATCAGGAGTGTGCATCATGCATCCGAAATTTA
GTCTCGTCATAGTGGAAGGCGGAATATGGAGCGTTAAGAAGTACAGAAAACTCATGCTGCATCGCATCGATTGGA
CCGAAAATACTCTATTCAACAAACATGAAGGTGATCAAGTCACGGAAATGGAGAAACTTCAAGCAAGGACTCAAG
CTGGGCCGCCCCCTGCGAGTCTACGAAATGAATGCGTACTTATTTTCCAGGGCGAACAAAAGTCCCGTGTCTTTC
GGAAATGGAGTACTAAAGTATGCGACACCGACGCTGAGGCAAGAAATATACTTGCTCGCGCCAAGATGGAAAACT
TTTGGACTTTAGCTAAGAGCTCTATATTTACATAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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