Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5360
Gene name
LocationContig_268:25309..26386
Strand-
Gene length (bp)1077
Transcript length (bp)1077
Coding sequence length (bp)1077
Protein length (aa) 359

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05277 DUF726 Protein of unknown function (DUF726) 4.8E-87 2 275

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q91WU4|TMCO4_MOUSE Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2 9 282 9.0E-55
sp|Q5TGY1|TMCO4_HUMAN Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1 9 333 2.0E-53
sp|Q9US10|YK68_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1 2 273 5.0E-53
sp|Q499U8|TMCO4_RAT Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus norvegicus GN=Tmco4 PE=2 SV=1 9 282 2.0E-51
sp|Q20035|TMCO4_CAEEL Uncharacterized membrane protein F35D11.3 OS=Caenorhabditis elegans GN=F35D11.3 PE=3 SV=2 38 325 3.0E-44
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[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q91WU4|TMCO4_MOUSE Transmembrane and coiled-coil domain-containing protein 4 OS=Mus musculus GN=Tmco4 PE=2 SV=2 9 282 9.0E-55
sp|Q5TGY1|TMCO4_HUMAN Transmembrane and coiled-coil domain-containing protein 4 OS=Homo sapiens GN=TMCO4 PE=2 SV=1 9 333 2.0E-53
sp|Q9US10|YK68_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC607.08c PE=3 SV=1 2 273 5.0E-53
sp|Q499U8|TMCO4_RAT Transmembrane and coiled-coil domain-containing protein 4 OS=Rattus norvegicus GN=Tmco4 PE=2 SV=1 9 282 2.0E-51
sp|Q20035|TMCO4_CAEEL Uncharacterized membrane protein F35D11.3 OS=Caenorhabditis elegans GN=F35D11.3 PE=3 SV=2 38 325 3.0E-44
sp|O14244|YELD_SCHPO Uncharacterized membrane protein C6F6.13c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC6F6.13c PE=3 SV=1 31 264 4.0E-40
sp|P43564|YFD4_YEAST Uncharacterized membrane protein YFL034W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFL034W PE=1 SV=2 31 274 1.0E-34
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GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 40 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5360
MMDSYAKEVEDFRFIPLEEEQAEEGRQGQAPAGQARRLRVTIGINGWLNSEEDITRPWRALGPETEVFALRYEMK
TLLALGSALTDLVHSFAWEALKMELLKRTALATLMAALWPVQLLAAASNVDNPFSRASNRSRKAGRLLADALANR
VQGERPVTLVGYSLGAAAIHACLQALAERRAFGLVADVVLIGAPAPSDPAHWRALRPVVSGRVFNVYSENDMVLG
FAYRMHSLRRGVAGLQPVRAVAGLVNVDLSARVAGHLRYPLLTGEILRRCAFVGVRAGSDIAKDDLLRLRDDGDR
HPGEAAHDLSPEAQPPRPAAAEPHPAAPRRVRQPTPDMDDSDAGGHAAIVLENRDGGH*
Coding >Hirsu2|5360
ATGATGGACAGCTACGCAAAGGAGGTCGAAGACTTCCGCTTCATCCCCCTCGAGGAAGAACAGGCCGAGGAGGGG
CGGCAGGGACAAGCGCCGGCGGGCCAGGCGCGCCGGCTCCGCGTCACCATCGGCATCAACGGCTGGCTCAACTCG
GAGGAGGACATCACGCGGCCGTGGCGGGCGCTGGGCCCGGAGACGGAGGTGTTCGCGCTGCGGTACGAGATGAAG
ACGCTGCTGGCGCTGGGCAGCGCGCTGACGGACCTGGTGCACTCGTTTGCGTGGGAGGCGCTCAAGATGGAGCTG
CTGAAGCGGACGGCGCTGGCAACGCTGATGGCGGCCCTGTGGCCGGTGCAGCTGCTGGCGGCCGCCTCCAACGTC
GACAACCCCTTCAGCCGGGCCAGCAACCGGTCGCGCAAGGCCGGCCGGCTGCTGGCCGACGCGCTGGCCAACCGC
GTCCAGGGCGAGCGGCCCGTCACCCTCGTCGGCTACTCGCTCGGCGCCGCCGCCATCCACGCCTGCCTGCAGGCG
CTGGCCGAGCGGCGCGCCTTCGGCCTCGTCGCCGACGTCGTGCTCATCGGCGCGCCCGCGCCCTCGGACCCGGCC
CACTGGCGCGCCCTGCGGCCCGTCGTCTCCGGCCGCGTCTTCAACGTCTACTCGGAGAACGACATGGTGCTCGGC
TTCGCCTACCGCATGCACAGCCTGCGCCGTGGCGTCGCCGGCCTGCAGCCCGTCCGCGCCGTCGCCGGCCTCGTC
AACGTCGACCTCAGCGCCCGCGTCGCCGGCCACCTGCGCTACCCGCTCCTGACCGGCGAGATCCTCCGCCGCTGC
GCCTTCGTCGGCGTCCGCGCCGGCTCGGACATCGCAAAGGACGACCTGCTCCGTCTCCGGGACGACGGCGACCGC
CACCCCGGGGAAGCGGCTCACGACCTCAGCCCCGAAGCACAGCCGCCCCGCCCCGCCGCCGCCGAGCCCCATCCT
GCGGCGCCGAGGCGGGTGCGCCAGCCGACGCCCGACATGGACGACTCGGACGCGGGTGGGCACGCGGCCATCGTC
CTCGAGAACCGCGACGGCGGCCACTGA
Transcript >Hirsu2|5360
ATGATGGACAGCTACGCAAAGGAGGTCGAAGACTTCCGCTTCATCCCCCTCGAGGAAGAACAGGCCGAGGAGGGG
CGGCAGGGACAAGCGCCGGCGGGCCAGGCGCGCCGGCTCCGCGTCACCATCGGCATCAACGGCTGGCTCAACTCG
GAGGAGGACATCACGCGGCCGTGGCGGGCGCTGGGCCCGGAGACGGAGGTGTTCGCGCTGCGGTACGAGATGAAG
ACGCTGCTGGCGCTGGGCAGCGCGCTGACGGACCTGGTGCACTCGTTTGCGTGGGAGGCGCTCAAGATGGAGCTG
CTGAAGCGGACGGCGCTGGCAACGCTGATGGCGGCCCTGTGGCCGGTGCAGCTGCTGGCGGCCGCCTCCAACGTC
GACAACCCCTTCAGCCGGGCCAGCAACCGGTCGCGCAAGGCCGGCCGGCTGCTGGCCGACGCGCTGGCCAACCGC
GTCCAGGGCGAGCGGCCCGTCACCCTCGTCGGCTACTCGCTCGGCGCCGCCGCCATCCACGCCTGCCTGCAGGCG
CTGGCCGAGCGGCGCGCCTTCGGCCTCGTCGCCGACGTCGTGCTCATCGGCGCGCCCGCGCCCTCGGACCCGGCC
CACTGGCGCGCCCTGCGGCCCGTCGTCTCCGGCCGCGTCTTCAACGTCTACTCGGAGAACGACATGGTGCTCGGC
TTCGCCTACCGCATGCACAGCCTGCGCCGTGGCGTCGCCGGCCTGCAGCCCGTCCGCGCCGTCGCCGGCCTCGTC
AACGTCGACCTCAGCGCCCGCGTCGCCGGCCACCTGCGCTACCCGCTCCTGACCGGCGAGATCCTCCGCCGCTGC
GCCTTCGTCGGCGTCCGCGCCGGCTCGGACATCGCAAAGGACGACCTGCTCCGTCTCCGGGACGACGGCGACCGC
CACCCCGGGGAAGCGGCTCACGACCTCAGCCCCGAAGCACAGCCGCCCCGCCCCGCCGCCGCCGAGCCCCATCCT
GCGGCGCCGAGGCGGGTGCGCCAGCCGACGCCCGACATGGACGACTCGGACGCGGGTGGGCACGCGGCCATCGTC
CTCGAGAACCGCGACGGCGGCCACTGA
Gene >Hirsu2|5360
ATGATGGACAGCTACGCAAAGGAGGTCGAAGACTTCCGCTTCATCCCCCTCGAGGAAGAACAGGCCGAGGAGGGG
CGGCAGGGACAAGCGCCGGCGGGCCAGGCGCGCCGGCTCCGCGTCACCATCGGCATCAACGGCTGGCTCAACTCG
GAGGAGGACATCACGCGGCCGTGGCGGGCGCTGGGCCCGGAGACGGAGGTGTTCGCGCTGCGGTACGAGATGAAG
ACGCTGCTGGCGCTGGGCAGCGCGCTGACGGACCTGGTGCACTCGTTTGCGTGGGAGGCGCTCAAGATGGAGCTG
CTGAAGCGGACGGCGCTGGCAACGCTGATGGCGGCCCTGTGGCCGGTGCAGCTGCTGGCGGCCGCCTCCAACGTC
GACAACCCCTTCAGCCGGGCCAGCAACCGGTCGCGCAAGGCCGGCCGGCTGCTGGCCGACGCGCTGGCCAACCGC
GTCCAGGGCGAGCGGCCCGTCACCCTCGTCGGCTACTCGCTCGGCGCCGCCGCCATCCACGCCTGCCTGCAGGCG
CTGGCCGAGCGGCGCGCCTTCGGCCTCGTCGCCGACGTCGTGCTCATCGGCGCGCCCGCGCCCTCGGACCCGGCC
CACTGGCGCGCCCTGCGGCCCGTCGTCTCCGGCCGCGTCTTCAACGTCTACTCGGAGAACGACATGGTGCTCGGC
TTCGCCTACCGCATGCACAGCCTGCGCCGTGGCGTCGCCGGCCTGCAGCCCGTCCGCGCCGTCGCCGGCCTCGTC
AACGTCGACCTCAGCGCCCGCGTCGCCGGCCACCTGCGCTACCCGCTCCTGACCGGCGAGATCCTCCGCCGCTGC
GCCTTCGTCGGCGTCCGCGCCGGCTCGGACATCGCAAAGGACGACCTGCTCCGTCTCCGGGACGACGGCGACCGC
CACCCCGGGGAAGCGGCTCACGACCTCAGCCCCGAAGCACAGCCGCCCCGCCCCGCCGCCGCCGAGCCCCATCCT
GCGGCGCCGAGGCGGGTGCGCCAGCCGACGCCCGACATGGACGACTCGGACGCGGGTGGGCACGCGGCCATCGTC
CTCGAGAACCGCGACGGCGGCCACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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