Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5352
Gene name
LocationContig_2679:219..895
Strand+
Gene length (bp)676
Transcript length (bp)579
Coding sequence length (bp)579
Protein length (aa) 193

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00172 Zn_clus Fungal Zn(2)-Cys(6) binuclear cluster domain 5.5E-08 35 79

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q04052|ARO80_YEAST Transcriptional activator ARO80 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARO80 PE=1 SV=1 29 76 6.0E-17

GO

GO Term Description Terminal node
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Yes
GO:0008270 zinc ion binding Yes
GO:0006355 regulation of transcription, DNA-templated Yes
GO:0005634 nucleus Yes
GO:0043169 cation binding No
GO:0065007 biological regulation No
GO:0010468 regulation of gene expression No
GO:0019222 regulation of metabolic process No
GO:0050794 regulation of cellular process No
GO:0005488 binding No
GO:0046872 metal ion binding No
GO:0043229 intracellular organelle No
GO:0008150 biological_process No
GO:0051252 regulation of RNA metabolic process No
GO:0009889 regulation of biosynthetic process No
GO:0010556 regulation of macromolecule biosynthetic process No
GO:0043226 organelle No
GO:0003674 molecular_function No
GO:0005575 cellular_component No
GO:0060255 regulation of macromolecule metabolic process No
GO:0043231 intracellular membrane-bounded organelle No
GO:0043227 membrane-bounded organelle No
GO:2001141 regulation of RNA biosynthetic process No
GO:0043167 ion binding No
GO:0044424 intracellular part No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0050789 regulation of biological process No
GO:1903506 regulation of nucleic acid-templated transcription No
GO:0044464 cell part No
GO:0031323 regulation of cellular metabolic process No
GO:0019219 regulation of nucleobase-containing compound metabolic process No
GO:0080090 regulation of primary metabolic process No
GO:2000112 regulation of cellular macromolecule biosynthetic process No
GO:0140110 transcription regulator activity No
GO:0003700 DNA-binding transcription factor activity No
GO:0046914 transition metal ion binding No
GO:0031326 regulation of cellular biosynthetic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

Transcription Factor Class
(based on PFAM domains)
Fungal Specific TF

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5352
LPQAEQEQEQGRARRRAQAREPSQSQPSQHKRVYQACIPCRRRKVRCDLGSVDNPHDPPCVRCRRESKECFFSAT
RRKRKTDDGEGSDVDEYIIRNGRKRLHASGSPPPRLDRRHYSDVPLTPGGSHGRNQPLRRPDGFARSRDRKSGDF
DPDGDANQTLENLEAQAVMRRGMYGPHDALDLLYKAATDRES*
Coding >Hirsu2|5352
CTGCCGCAGGCGGAGCAGGAGCAGGAACAGGGGCGGGCGCGGAGGCGGGCGCAGGCGCGGGAGCCGTCGCAGTCC
CAGCCGTCCCAGCACAAGCGCGTCTACCAGGCCTGCATCCCCTGCCGCCGCCGCAAGGTCCGCTGCGACCTCGGC
AGCGTCGACAATCCCCACGACCCTCCCTGCGTCCGCTGCCGCCGCGAGAGCAAGGAGTGCTTCTTCAGCGCCACC
CGGCGCAAGCGCAAGACCGACGACGGCGAAGGCAGCGACGTCGACGAGTACATCATCCGCAACGGCCGCAAGAGG
CTCCACGCCTCCGGCAGCCCCCCGCCCCGCCTGGACCGCCGCCACTACAGCGACGTGCCCCTGACCCCCGGCGGC
TCCCACGGCCGGAACCAGCCCCTGAGGCGGCCCGACGGCTTCGCGCGCTCCCGCGACCGCAAGTCCGGCGACTTC
GACCCCGATGGCGACGCCAACCAGACGCTCGAGAACCTCGAAGCCCAGGCCGTCATGCGCCGCGGCATGTACGGC
CCCCACGACGCCCTCGACCTCCTCTACAAGGCCGCCACGGACAGAGAAAGCTGA
Transcript >Hirsu2|5352
CTGCCGCAGGCGGAGCAGGAGCAGGAACAGGGGCGGGCGCGGAGGCGGGCGCAGGCGCGGGAGCCGTCGCAGTCC
CAGCCGTCCCAGCACAAGCGCGTCTACCAGGCCTGCATCCCCTGCCGCCGCCGCAAGGTCCGCTGCGACCTCGGC
AGCGTCGACAATCCCCACGACCCTCCCTGCGTCCGCTGCCGCCGCGAGAGCAAGGAGTGCTTCTTCAGCGCCACC
CGGCGCAAGCGCAAGACCGACGACGGCGAAGGCAGCGACGTCGACGAGTACATCATCCGCAACGGCCGCAAGAGG
CTCCACGCCTCCGGCAGCCCCCCGCCCCGCCTGGACCGCCGCCACTACAGCGACGTGCCCCTGACCCCCGGCGGC
TCCCACGGCCGGAACCAGCCCCTGAGGCGGCCCGACGGCTTCGCGCGCTCCCGCGACCGCAAGTCCGGCGACTTC
GACCCCGATGGCGACGCCAACCAGACGCTCGAGAACCTCGAAGCCCAGGCCGTCATGCGCCGCGGCATGTACGGC
CCCCACGACGCCCTCGACCTCCTCTACAAGGCCGCCACGGACAGAGAAAGCTGA
Gene >Hirsu2|5352
CTGCCGCAGGCGGAGCAGGAGCAGGAACAGGGGCGGGCGCGGAGGCGGGCGCAGGCGCGGGAGCCGGTGACGCTC
CGGGCGGCGCGGCCTCCGCAGCCGCCGCAGCCCCGACCGACGGCCAGCAGTCGCAGTCCCAGCCGTCCCAGCACA
AGCGCGTCTACCAGGCCTGCATCCCCTGCCGCCGCCGCAAGGTCCGCTGCGACCTCGGCAGCGTCGACAATCCCC
ACGACCCTCCCTGCGTCCGCTGCCGCCGCGAGAGCAAGGAGTGCTTCTTCAGCGCCACCCGGCGCAAGCGCAAGA
CCGACGACGGCGAAGGCAGCGACGTCGACGAGTACATCATCCGCAACGGCCGCAAGAGGCTCCACGCCTCCGGCA
GCCCCCCGCCCCGCCTGGACCGCCGCCACTACAGCGACGTGCCCCTGACCCCCGGCGGCTCCCACGGCCGGAACC
AGCCCCTGAGGCGGCCCGACGGCTTCGCGCGCTCCCGCGACCGCAAGTCCGGCGACTTCGACCCCGATGGCGACG
CCAACCAGACGCTCGAGAACCTCGAAGCCCAGGCCGTCATGCGCCGCGGCATGTACGGCCCCCACGACGCCCTCG
ACCTCCTCTACAAGGCCGCCACGGACAGGTTTGTTGCCGGACAGTCTTCTAACCAGCCCTTGCCAGAGAAAGCTG
A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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