© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5352 |
| Gene name | |
| Location | Contig_2679:219..895 |
| Strand | + |
| Gene length (bp) | 676 |
| Transcript length (bp) | 579 |
| Coding sequence length (bp) | 579 |
| Protein length (aa) | 193 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00172 | Zn_clus | Fungal Zn(2)-Cys(6) binuclear cluster domain | 5.5E-08 | 35 | 79 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q04052|ARO80_YEAST | Transcriptional activator ARO80 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARO80 PE=1 SV=1 | 29 | 76 | 6.0E-17 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0005634 | nucleus | Yes |
| GO:0043169 | cation binding | No |
| GO:0065007 | biological regulation | No |
| GO:0010468 | regulation of gene expression | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0005488 | binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0043229 | intracellular organelle | No |
| GO:0008150 | biological_process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0043226 | organelle | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0043167 | ion binding | No |
| GO:0044424 | intracellular part | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0044464 | cell part | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:2000112 | regulation of cellular macromolecule biosynthetic process | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0003700 | DNA-binding transcription factor activity | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5352 LPQAEQEQEQGRARRRAQAREPSQSQPSQHKRVYQACIPCRRRKVRCDLGSVDNPHDPPCVRCRRESKECFFSAT RRKRKTDDGEGSDVDEYIIRNGRKRLHASGSPPPRLDRRHYSDVPLTPGGSHGRNQPLRRPDGFARSRDRKSGDF DPDGDANQTLENLEAQAVMRRGMYGPHDALDLLYKAATDRES* |
| Coding | >Hirsu2|5352 CTGCCGCAGGCGGAGCAGGAGCAGGAACAGGGGCGGGCGCGGAGGCGGGCGCAGGCGCGGGAGCCGTCGCAGTCC CAGCCGTCCCAGCACAAGCGCGTCTACCAGGCCTGCATCCCCTGCCGCCGCCGCAAGGTCCGCTGCGACCTCGGC AGCGTCGACAATCCCCACGACCCTCCCTGCGTCCGCTGCCGCCGCGAGAGCAAGGAGTGCTTCTTCAGCGCCACC CGGCGCAAGCGCAAGACCGACGACGGCGAAGGCAGCGACGTCGACGAGTACATCATCCGCAACGGCCGCAAGAGG CTCCACGCCTCCGGCAGCCCCCCGCCCCGCCTGGACCGCCGCCACTACAGCGACGTGCCCCTGACCCCCGGCGGC TCCCACGGCCGGAACCAGCCCCTGAGGCGGCCCGACGGCTTCGCGCGCTCCCGCGACCGCAAGTCCGGCGACTTC GACCCCGATGGCGACGCCAACCAGACGCTCGAGAACCTCGAAGCCCAGGCCGTCATGCGCCGCGGCATGTACGGC CCCCACGACGCCCTCGACCTCCTCTACAAGGCCGCCACGGACAGAGAAAGCTGA |
| Transcript | >Hirsu2|5352 CTGCCGCAGGCGGAGCAGGAGCAGGAACAGGGGCGGGCGCGGAGGCGGGCGCAGGCGCGGGAGCCGTCGCAGTCC CAGCCGTCCCAGCACAAGCGCGTCTACCAGGCCTGCATCCCCTGCCGCCGCCGCAAGGTCCGCTGCGACCTCGGC AGCGTCGACAATCCCCACGACCCTCCCTGCGTCCGCTGCCGCCGCGAGAGCAAGGAGTGCTTCTTCAGCGCCACC CGGCGCAAGCGCAAGACCGACGACGGCGAAGGCAGCGACGTCGACGAGTACATCATCCGCAACGGCCGCAAGAGG CTCCACGCCTCCGGCAGCCCCCCGCCCCGCCTGGACCGCCGCCACTACAGCGACGTGCCCCTGACCCCCGGCGGC TCCCACGGCCGGAACCAGCCCCTGAGGCGGCCCGACGGCTTCGCGCGCTCCCGCGACCGCAAGTCCGGCGACTTC GACCCCGATGGCGACGCCAACCAGACGCTCGAGAACCTCGAAGCCCAGGCCGTCATGCGCCGCGGCATGTACGGC CCCCACGACGCCCTCGACCTCCTCTACAAGGCCGCCACGGACAGAGAAAGCTGA |
| Gene | >Hirsu2|5352 CTGCCGCAGGCGGAGCAGGAGCAGGAACAGGGGCGGGCGCGGAGGCGGGCGCAGGCGCGGGAGCCGGTGACGCTC CGGGCGGCGCGGCCTCCGCAGCCGCCGCAGCCCCGACCGACGGCCAGCAGTCGCAGTCCCAGCCGTCCCAGCACA AGCGCGTCTACCAGGCCTGCATCCCCTGCCGCCGCCGCAAGGTCCGCTGCGACCTCGGCAGCGTCGACAATCCCC ACGACCCTCCCTGCGTCCGCTGCCGCCGCGAGAGCAAGGAGTGCTTCTTCAGCGCCACCCGGCGCAAGCGCAAGA CCGACGACGGCGAAGGCAGCGACGTCGACGAGTACATCATCCGCAACGGCCGCAAGAGGCTCCACGCCTCCGGCA GCCCCCCGCCCCGCCTGGACCGCCGCCACTACAGCGACGTGCCCCTGACCCCCGGCGGCTCCCACGGCCGGAACC AGCCCCTGAGGCGGCCCGACGGCTTCGCGCGCTCCCGCGACCGCAAGTCCGGCGACTTCGACCCCGATGGCGACG CCAACCAGACGCTCGAGAACCTCGAAGCCCAGGCCGTCATGCGCCGCGGCATGTACGGCCCCCACGACGCCCTCG ACCTCCTCTACAAGGCCGCCACGGACAGGTTTGTTGCCGGACAGTCTTCTAACCAGCCCTTGCCAGAGAAAGCTG A |