© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5340 |
| Gene name | |
| Location | Contig_267:10900..11799 |
| Strand | + |
| Gene length (bp) | 899 |
| Transcript length (bp) | 843 |
| Coding sequence length (bp) | 843 |
| Protein length (aa) | 281 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane | Signal peptide | 0.1066 | 0.1053 | 0.6258 | 0.6508 | 0.0658 | 0.0065 | 0.0689 | 0.3988 | 0.1531 | 0.0445 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 164 | 186 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 9847 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|5340 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5340 MPYEAVALFEPRSSFSRPNQLSVLHPRHDVLSGRQVSCGNLYKPCQVSGGCLREDLICCDPYPGWCLSGVCCGLT YFYCAPAGSDCCGEKYCDPGYVCNGSTCVPKPGLDGVSTAQNSVTGTVRATVVPSALSSASSSASASSTAPPSPT ATPDSGGGTPVGAIVGGVVGGLAVIVIAVIALVWLLRSRSSRETADAPPLMGHVSTPPPGHQSLPPYALQPEATN KDYRESRFPLVDITPSAASPPQSYGAGYPLQNQPVAHEAPVQTSEHHRGQMQELA* |
| Coding | >Hirsu2|5340 ATGCCGTACGAAGCAGTGGCTCTCTTCGAGCCCCGATCCAGCTTCAGTCGGCCCAACCAGTTGAGCGTCTTGCAC CCACGCCATGACGTCCTGAGCGGCCGCCAGGTCTCGTGCGGGAATTTATACAAGCCTTGCCAAGTCAGTGGTGGC TGCCTCAGGGAAGACTTGATCTGCTGTGACCCTTACCCTGGCTGGTGCCTAAGCGGCGTCTGCTGCGGCTTGACA TACTTCTACTGCGCGCCCGCCGGCTCCGATTGCTGTGGCGAGAAATACTGCGATCCCGGTTACGTCTGCAACGGG TCTACCTGCGTGCCCAAGCCCGGCCTCGACGGCGTGTCGACGGCGCAGAACTCCGTGACCGGGACGGTGCGGGCA ACTGTCGTTCCGTCGGCCTTGTCTTCCGCCTCATCCTCGGCTTCAGCCTCTTCGACTGCTCCGCCTTCTCCGACC GCTACGCCGGACAGTGGCGGCGGCACGCCGGTGGGGGCCATCGTCGGCGGCGTCGTCGGCGGCCTCGCCGTCATC GTCATCGCCGTCATCGCCCTGGTCTGGCTCCTCCGGAGCAGGTCGAGCAGGGAGACGGCGGACGCGCCTCCGCTC ATGGGCCACGTCTCCACGCCCCCCCCGGGACACCAGAGCCTGCCGCCGTACGCGTTGCAGCCCGAGGCCACGAAC AAGGATTACCGGGAATCCCGCTTCCCGCTCGTGGACATCACCCCGTCCGCCGCCAGCCCTCCGCAATCCTACGGG GCCGGCTACCCGCTGCAAAACCAGCCGGTGGCTCATGAGGCGCCGGTGCAGACTTCGGAGCACCACCGCGGACAG ATGCAGGAGCTTGCTTGA |
| Transcript | >Hirsu2|5340 ATGCCGTACGAAGCAGTGGCTCTCTTCGAGCCCCGATCCAGCTTCAGTCGGCCCAACCAGTTGAGCGTCTTGCAC CCACGCCATGACGTCCTGAGCGGCCGCCAGGTCTCGTGCGGGAATTTATACAAGCCTTGCCAAGTCAGTGGTGGC TGCCTCAGGGAAGACTTGATCTGCTGTGACCCTTACCCTGGCTGGTGCCTAAGCGGCGTCTGCTGCGGCTTGACA TACTTCTACTGCGCGCCCGCCGGCTCCGATTGCTGTGGCGAGAAATACTGCGATCCCGGTTACGTCTGCAACGGG TCTACCTGCGTGCCCAAGCCCGGCCTCGACGGCGTGTCGACGGCGCAGAACTCCGTGACCGGGACGGTGCGGGCA ACTGTCGTTCCGTCGGCCTTGTCTTCCGCCTCATCCTCGGCTTCAGCCTCTTCGACTGCTCCGCCTTCTCCGACC GCTACGCCGGACAGTGGCGGCGGCACGCCGGTGGGGGCCATCGTCGGCGGCGTCGTCGGCGGCCTCGCCGTCATC GTCATCGCCGTCATCGCCCTGGTCTGGCTCCTCCGGAGCAGGTCGAGCAGGGAGACGGCGGACGCGCCTCCGCTC ATGGGCCACGTCTCCACGCCCCCCCCGGGACACCAGAGCCTGCCGCCGTACGCGTTGCAGCCCGAGGCCACGAAC AAGGATTACCGGGAATCCCGCTTCCCGCTCGTGGACATCACCCCGTCCGCCGCCAGCCCTCCGCAATCCTACGGG GCCGGCTACCCGCTGCAAAACCAGCCGGTGGCTCATGAGGCGCCGGTGCAGACTTCGGAGCACCACCGCGGACAG ATGCAGGAGCTTGCTTGA |
| Gene | >Hirsu2|5340 ATGCCGTACGAAGCAGTGGCTCTCTTCGAGCCCCGATCCAGCTTCAGTCGGCCCAACCAGTTGAGCGTCTTGCAC CCACGCCATGACGTCCTGAGCGGCCGCCAGGTCTCGTGCGGGAATTTATACAAGCCTTGCCAAGGTACGTTCTCC TCACTGACGCAGAAACATGCCCGTTCTGACCCCTAAAAAAAGGAGTCAGTGGTGGCTGCCTCAGGGAAGACTTGA TCTGCTGTGACCCTTACCCTGGCTGGTGCCTAAGCGGCGTCTGCTGCGGCTTGACATACTTCTACTGCGCGCCCG CCGGCTCCGATTGCTGTGGCGAGAAATACTGCGATCCCGGTTACGTCTGCAACGGGTCTACCTGCGTGCCCAAGC CCGGCCTCGACGGCGTGTCGACGGCGCAGAACTCCGTGACCGGGACGGTGCGGGCAACTGTCGTTCCGTCGGCCT TGTCTTCCGCCTCATCCTCGGCTTCAGCCTCTTCGACTGCTCCGCCTTCTCCGACCGCTACGCCGGACAGTGGCG GCGGCACGCCGGTGGGGGCCATCGTCGGCGGCGTCGTCGGCGGCCTCGCCGTCATCGTCATCGCCGTCATCGCCC TGGTCTGGCTCCTCCGGAGCAGGTCGAGCAGGGAGACGGCGGACGCGCCTCCGCTCATGGGCCACGTCTCCACGC CCCCCCCGGGACACCAGAGCCTGCCGCCGTACGCGTTGCAGCCCGAGGCCACGAACAAGGATTACCGGGAATCCC GCTTCCCGCTCGTGGACATCACCCCGTCCGCCGCCAGCCCTCCGCAATCCTACGGGGCCGGCTACCCGCTGCAAA ACCAGCCGGTGGCTCATGAGGCGCCGGTGCAGACTTCGGAGCACCACCGCGGACAGATGCAGGAGCTTGCTTGA |