Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5340
Gene name
LocationContig_267:10900..11799
Strand+
Gene length (bp)899
Transcript length (bp)843
Coding sequence length (bp)843
Protein length (aa) 281

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane Signal peptide 0.1066 0.1053 0.6258 0.6508 0.0658 0.0065 0.0689 0.3988 0.1531 0.0445

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 164 186 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup9847
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|5340 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5340
MPYEAVALFEPRSSFSRPNQLSVLHPRHDVLSGRQVSCGNLYKPCQVSGGCLREDLICCDPYPGWCLSGVCCGLT
YFYCAPAGSDCCGEKYCDPGYVCNGSTCVPKPGLDGVSTAQNSVTGTVRATVVPSALSSASSSASASSTAPPSPT
ATPDSGGGTPVGAIVGGVVGGLAVIVIAVIALVWLLRSRSSRETADAPPLMGHVSTPPPGHQSLPPYALQPEATN
KDYRESRFPLVDITPSAASPPQSYGAGYPLQNQPVAHEAPVQTSEHHRGQMQELA*
Coding >Hirsu2|5340
ATGCCGTACGAAGCAGTGGCTCTCTTCGAGCCCCGATCCAGCTTCAGTCGGCCCAACCAGTTGAGCGTCTTGCAC
CCACGCCATGACGTCCTGAGCGGCCGCCAGGTCTCGTGCGGGAATTTATACAAGCCTTGCCAAGTCAGTGGTGGC
TGCCTCAGGGAAGACTTGATCTGCTGTGACCCTTACCCTGGCTGGTGCCTAAGCGGCGTCTGCTGCGGCTTGACA
TACTTCTACTGCGCGCCCGCCGGCTCCGATTGCTGTGGCGAGAAATACTGCGATCCCGGTTACGTCTGCAACGGG
TCTACCTGCGTGCCCAAGCCCGGCCTCGACGGCGTGTCGACGGCGCAGAACTCCGTGACCGGGACGGTGCGGGCA
ACTGTCGTTCCGTCGGCCTTGTCTTCCGCCTCATCCTCGGCTTCAGCCTCTTCGACTGCTCCGCCTTCTCCGACC
GCTACGCCGGACAGTGGCGGCGGCACGCCGGTGGGGGCCATCGTCGGCGGCGTCGTCGGCGGCCTCGCCGTCATC
GTCATCGCCGTCATCGCCCTGGTCTGGCTCCTCCGGAGCAGGTCGAGCAGGGAGACGGCGGACGCGCCTCCGCTC
ATGGGCCACGTCTCCACGCCCCCCCCGGGACACCAGAGCCTGCCGCCGTACGCGTTGCAGCCCGAGGCCACGAAC
AAGGATTACCGGGAATCCCGCTTCCCGCTCGTGGACATCACCCCGTCCGCCGCCAGCCCTCCGCAATCCTACGGG
GCCGGCTACCCGCTGCAAAACCAGCCGGTGGCTCATGAGGCGCCGGTGCAGACTTCGGAGCACCACCGCGGACAG
ATGCAGGAGCTTGCTTGA
Transcript >Hirsu2|5340
ATGCCGTACGAAGCAGTGGCTCTCTTCGAGCCCCGATCCAGCTTCAGTCGGCCCAACCAGTTGAGCGTCTTGCAC
CCACGCCATGACGTCCTGAGCGGCCGCCAGGTCTCGTGCGGGAATTTATACAAGCCTTGCCAAGTCAGTGGTGGC
TGCCTCAGGGAAGACTTGATCTGCTGTGACCCTTACCCTGGCTGGTGCCTAAGCGGCGTCTGCTGCGGCTTGACA
TACTTCTACTGCGCGCCCGCCGGCTCCGATTGCTGTGGCGAGAAATACTGCGATCCCGGTTACGTCTGCAACGGG
TCTACCTGCGTGCCCAAGCCCGGCCTCGACGGCGTGTCGACGGCGCAGAACTCCGTGACCGGGACGGTGCGGGCA
ACTGTCGTTCCGTCGGCCTTGTCTTCCGCCTCATCCTCGGCTTCAGCCTCTTCGACTGCTCCGCCTTCTCCGACC
GCTACGCCGGACAGTGGCGGCGGCACGCCGGTGGGGGCCATCGTCGGCGGCGTCGTCGGCGGCCTCGCCGTCATC
GTCATCGCCGTCATCGCCCTGGTCTGGCTCCTCCGGAGCAGGTCGAGCAGGGAGACGGCGGACGCGCCTCCGCTC
ATGGGCCACGTCTCCACGCCCCCCCCGGGACACCAGAGCCTGCCGCCGTACGCGTTGCAGCCCGAGGCCACGAAC
AAGGATTACCGGGAATCCCGCTTCCCGCTCGTGGACATCACCCCGTCCGCCGCCAGCCCTCCGCAATCCTACGGG
GCCGGCTACCCGCTGCAAAACCAGCCGGTGGCTCATGAGGCGCCGGTGCAGACTTCGGAGCACCACCGCGGACAG
ATGCAGGAGCTTGCTTGA
Gene >Hirsu2|5340
ATGCCGTACGAAGCAGTGGCTCTCTTCGAGCCCCGATCCAGCTTCAGTCGGCCCAACCAGTTGAGCGTCTTGCAC
CCACGCCATGACGTCCTGAGCGGCCGCCAGGTCTCGTGCGGGAATTTATACAAGCCTTGCCAAGGTACGTTCTCC
TCACTGACGCAGAAACATGCCCGTTCTGACCCCTAAAAAAAGGAGTCAGTGGTGGCTGCCTCAGGGAAGACTTGA
TCTGCTGTGACCCTTACCCTGGCTGGTGCCTAAGCGGCGTCTGCTGCGGCTTGACATACTTCTACTGCGCGCCCG
CCGGCTCCGATTGCTGTGGCGAGAAATACTGCGATCCCGGTTACGTCTGCAACGGGTCTACCTGCGTGCCCAAGC
CCGGCCTCGACGGCGTGTCGACGGCGCAGAACTCCGTGACCGGGACGGTGCGGGCAACTGTCGTTCCGTCGGCCT
TGTCTTCCGCCTCATCCTCGGCTTCAGCCTCTTCGACTGCTCCGCCTTCTCCGACCGCTACGCCGGACAGTGGCG
GCGGCACGCCGGTGGGGGCCATCGTCGGCGGCGTCGTCGGCGGCCTCGCCGTCATCGTCATCGCCGTCATCGCCC
TGGTCTGGCTCCTCCGGAGCAGGTCGAGCAGGGAGACGGCGGACGCGCCTCCGCTCATGGGCCACGTCTCCACGC
CCCCCCCGGGACACCAGAGCCTGCCGCCGTACGCGTTGCAGCCCGAGGCCACGAACAAGGATTACCGGGAATCCC
GCTTCCCGCTCGTGGACATCACCCCGTCCGCCGCCAGCCCTCCGCAATCCTACGGGGCCGGCTACCCGCTGCAAA
ACCAGCCGGTGGCTCATGAGGCGCCGGTGCAGACTTCGGAGCACCACCGCGGACAGATGCAGGAGCTTGCTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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