Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|5320
Gene name
Location	Contig_266:9950..11280
Strand	+
Gene length (bp)	1330
Transcript length (bp)	1260
Coding sequence length (bp)	1260
Protein length (aa)	420

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF12231	Rif1_N	Rap1-interacting factor 1 N terminal	3.5E-104	163	416

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q96UP3\|RIF1_SCHPO	Telomere length regulator protein rif1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rif1 PE=1 SV=1	103	419	2.0E-08

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|5320 MASPAASAPSIHILTSLPARPPTPPREASHDADLSLRPILLGRTYAFDPCHSLQTPPSANSHLSSAVAGSDAGSD PGSRRLCKRVEWSSHTEYKDPPDYRDGTRLEKSPPLSAPPSASSRPIKGILKPSPSPSPFGSSFGTQLDGTIAQP NLGEMLDSTIKQLAGPDRDSKLDAYMVLARALKTSNNLPDRVALQNKMSLFMQFIQRDITSKNQNGTLDSSLVNH ALTLLATFLHFPAIASTITSDFGVFVIDHAIRSFEDPAMPKEVIRHLMQVVAFQNFSPKVMVSDRVGRLLAALHN IEQHLKGKSIVMSRLHIYKRLVKQARNCVIAHSDWLKDMFTDMLSTVKDIRAQAISLGIEAGFALRSDKLLFRKV AEIFKTADNDQTYIDFYIERLQRMIKDKQTASAVPQIWSVTRSI*
Coding	>Hirsu2\|5320 ATGGCATCTCCAGCAGCCTCGGCCCCATCCATACACATCCTCACCTCCCTTCCAGCCCGACCGCCGACTCCGCCG CGCGAGGCCAGCCACGACGCCGACCTTTCCCTTCGGCCCATCCTGCTCGGAAGGACTTACGCTTTCGACCCCTGC CACAGCCTCCAAACGCCTCCGAGCGCCAACTCACACCTGTCCTCCGCGGTCGCTGGCTCCGACGCGGGTTCCGAC CCGGGCTCCAGGCGATTGTGCAAGAGGGTCGAGTGGTCCAGCCACACCGAGTACAAGGACCCTCCCGACTATCGT GACGGGACCCGACTCGAAAAGTCTCCTCCCCTCTCCGCTCCGCCCTCGGCCTCGTCCAGGCCCATCAAGGGCATC CTCAAGCCATCGCCGTCCCCCAGTCCTTTCGGCTCCTCGTTCGGTACCCAACTCGATGGCACCATCGCCCAGCCC AACCTAGGCGAAATGCTCGACTCCACCATCAAACAGCTCGCCGGGCCCGATCGGGACTCCAAGCTGGATGCCTAT ATGGTGCTTGCTAGAGCGTTGAAGACATCCAACAACCTCCCCGACCGTGTTGCGCTACAGAACAAAATGAGTCTG TTCATGCAGTTCATCCAGCGCGACATCACATCCAAGAACCAGAACGGCACCCTTGACAGCTCCTTAGTCAACCAT GCCCTTACTCTACTCGCCACCTTCCTTCATTTTCCTGCCATCGCCTCTACCATCACCTCGGACTTCGGCGTCTTC GTCATCGATCACGCTATCCGGTCCTTTGAAGATCCCGCCATGCCCAAGGAAGTCATACGCCACCTGATGCAGGTT GTCGCCTTCCAGAACTTCTCTCCAAAGGTAATGGTGTCAGACCGTGTTGGACGACTGCTTGCCGCTCTCCACAAC ATCGAACAGCATCTGAAGGGTAAGAGCATAGTCATGAGCCGCTTGCACATCTACAAGCGGCTCGTCAAGCAGGCT CGGAACTGCGTCATCGCTCACTCTGACTGGCTCAAGGACATGTTCACAGACATGCTCAGCACAGTCAAGGATATT CGGGCCCAAGCCATTAGTCTCGGCATCGAGGCAGGCTTTGCCCTTCGGTCCGACAAGCTTCTGTTTCGAAAAGTT GCCGAGATCTTCAAGACCGCAGACAATGATCAGACTTACATCGACTTTTATATCGAAAGGCTGCAACGAATGATC AAGGACAAGCAGACTGCGTCTGCCGTACCTCAGATTTGGAGCGTTACGCGTTCAATATGA
Transcript	>Hirsu2\|5320 ATGGCATCTCCAGCAGCCTCGGCCCCATCCATACACATCCTCACCTCCCTTCCAGCCCGACCGCCGACTCCGCCG CGCGAGGCCAGCCACGACGCCGACCTTTCCCTTCGGCCCATCCTGCTCGGAAGGACTTACGCTTTCGACCCCTGC CACAGCCTCCAAACGCCTCCGAGCGCCAACTCACACCTGTCCTCCGCGGTCGCTGGCTCCGACGCGGGTTCCGAC CCGGGCTCCAGGCGATTGTGCAAGAGGGTCGAGTGGTCCAGCCACACCGAGTACAAGGACCCTCCCGACTATCGT GACGGGACCCGACTCGAAAAGTCTCCTCCCCTCTCCGCTCCGCCCTCGGCCTCGTCCAGGCCCATCAAGGGCATC CTCAAGCCATCGCCGTCCCCCAGTCCTTTCGGCTCCTCGTTCGGTACCCAACTCGATGGCACCATCGCCCAGCCC AACCTAGGCGAAATGCTCGACTCCACCATCAAACAGCTCGCCGGGCCCGATCGGGACTCCAAGCTGGATGCCTAT ATGGTGCTTGCTAGAGCGTTGAAGACATCCAACAACCTCCCCGACCGTGTTGCGCTACAGAACAAAATGAGTCTG TTCATGCAGTTCATCCAGCGCGACATCACATCCAAGAACCAGAACGGCACCCTTGACAGCTCCTTAGTCAACCAT GCCCTTACTCTACTCGCCACCTTCCTTCATTTTCCTGCCATCGCCTCTACCATCACCTCGGACTTCGGCGTCTTC GTCATCGATCACGCTATCCGGTCCTTTGAAGATCCCGCCATGCCCAAGGAAGTCATACGCCACCTGATGCAGGTT GTCGCCTTCCAGAACTTCTCTCCAAAGGTAATGGTGTCAGACCGTGTTGGACGACTGCTTGCCGCTCTCCACAAC ATCGAACAGCATCTGAAGGGTAAGAGCATAGTCATGAGCCGCTTGCACATCTACAAGCGGCTCGTCAAGCAGGCT CGGAACTGCGTCATCGCTCACTCTGACTGGCTCAAGGACATGTTCACAGACATGCTCAGCACAGTCAAGGATATT CGGGCCCAAGCCATTAGTCTCGGCATCGAGGCAGGCTTTGCCCTTCGGTCCGACAAGCTTCTGTTTCGAAAAGTT GCCGAGATCTTCAAGACCGCAGACAATGATCAGACTTACATCGACTTTTATATCGAAAGGCTGCAACGAATGATC AAGGACAAGCAGACTGCGTCTGCCGTACCTCAGATTTGGAGCGTTACGCGTTCAATATGA
Gene	>Hirsu2\|5320 ATGGCATCTCCAGCAGCCTCGGCCCCATCCATACACATCCTCACCTCCCTTCCAGCCCGACCGCCGACTCCGCCG CGCGAGGCCAGCCACGACGCCGACCTTTCCCTTCGGCCCATCCTGCTCGGAAGGACTTACGCTTTCGACCCCTGC CACAGCCTCCAAACGCCTCCGAGCGCCAACTCACACCTGTCCTCCGCGGTCGCTGGCTCCGACGCGGGTTCCGAC CCGGGCTCCAGGCGATTGTGCAAGAGGGTCGAGTGGTCCAGCCACACCGAGTACAAGGACCCTCCCGACTATCGT GACGGGACCCGACTCGAAAAGTCTCCTCCCCTCTCCGCTCCGCCCTCGGCCTCGTCCAGGCCCATCAAGGGCATC CTCAAGCCATCGCCGTCCCCCAGTCCTTTCGGCTCCTCGTTCGGTACCCAACTCGATGGCACCATCGCCCAGCCC AACCTAGGCGAAATGCTCGACTCCACCATCAAACAGCTCGCCGGGCCCGATCGGGACTCCAAGCTGGATGCCTAT ATGGTGCTTGCTAGAGCGTTGAAGACATCCAACAACCTCCCCGACCGTGTTGCGCTACAGAACAAAATGAGTCTG TTCATGCAGTTCATCCAGCGCGACATCACATCCAAGAACCAGAACGGCACCCTTGACAGCTCCTTAGTCAACCAT GCCCTTACTCTACTCGCCACCTTCCTTCATTTTCCTGCCATCGCCTCTACCATCACCTCGGACTTCGGCGTCTTC GTCATCGATCACGCTATCCGGTCCTTTGAAGATCCCGCCATGCCCAAGGAAGTCATACGCCACCTGATGCAGGTT GTCGCCTTCCAGAACTTCTCTCCAAAGGTAATGGTGTCAGACCGTGTTGGACGACTGCTTGCCGCTCTCCACAAC ATCGAACAGCATCTGAAGGGTAAGAGCATAGTCATGAGCCGCTTGCACATCTACAAGCGGCTCGTCAAGCAGGCT CGGAACTGCGTCATCGCTCACTCTGACTGGCTCAAGGACATGTTCACAGACATGCTCAGCACAGTCAAGGATATT CGGGCCCAAGCCATTAGTCTCGGCATCGAGGCAGGCTTTGCCCTTCGGTCCGACAAGCTTCTGTTTCGAAAAGTT GCCGAGATCTTCAAGACCGCAGACAATGATCAGACTTACATCGACTTTTATATCGAAAGGCTGCAACGAATGATC AAGGACAAGCAGACTGCGTCTGCCGTACCTCAGATTTGGAGCGTTGTTATTCTCTTTTTGCGACACCCGCTCGAC AGATGGCTATACTACGGCCCTTGGCTGACAATCATCCAAGACGCGTTCAATATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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