Protein ID | Hirsu2|5316 |
Gene name | |
Location | Contig_266:1294..1858 |
Strand | - |
Gene length (bp) | 564 |
Transcript length (bp) | 564 |
Coding sequence length (bp) | 564 |
Protein length (aa) | 188 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.0911 | 0.0556 | 0.9357 | 0.0658 | 0.0982 | 0.0163 | 0.1334 | 0.1349 | 0.0749 | 0.002 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 18 | 0.999546 |
Orthofinder run ID | 4 |
Orthogroup | 569 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|5316 MFLTQLASVLALAAGAAASSAKPQAHVESCYKGETASLYCYNGKDDKPQNVDMGDVAKVAQALRDWGRGIEGGRF LTMTAKDAPDCAEWDIFTLNTVMALAKHVGTNKDSSVLYEDIARTIDGGAATQDEEDDKRKTIMSCLEAGGSLGV AVNKTDPAYHTKEYEKSGYTPDGIVIKIVANVKKVDL* |
Coding | >Hirsu2|5316 ATGTTCCTCACACAACTGGCTTCCGTCCTGGCCCTGGCTGCGGGAGCGGCGGCCAGCAGCGCGAAGCCCCAGGCT CACGTCGAGAGCTGCTACAAGGGCGAAACGGCATCGCTCTATTGCTACAACGGCAAGGACGACAAGCCGCAGAAC GTCGACATGGGCGACGTGGCCAAGGTGGCCCAGGCCCTCCGGGACTGGGGCCGCGGCATCGAGGGCGGCCGCTTC CTGACCATGACGGCCAAGGACGCGCCAGACTGTGCCGAGTGGGACATCTTCACCCTCAACACCGTCATGGCCCTG GCCAAGCACGTCGGCACCAACAAGGACTCGTCGGTGCTGTACGAGGACATTGCCCGCACCATCGACGGCGGCGCC GCGACCCAGGACGAAGAGGACGACAAGCGCAAGACCATCATGAGCTGCCTCGAGGCTGGCGGCTCTCTCGGTGTC GCCGTCAACAAGACGGATCCCGCCTACCACACCAAGGAGTACGAGAAGTCGGGCTACACCCCGGATGGAATCGTC ATCAAGATCGTGGCCAACGTCAAAAAGGTGGATCTTTGA |
Transcript | >Hirsu2|5316 ATGTTCCTCACACAACTGGCTTCCGTCCTGGCCCTGGCTGCGGGAGCGGCGGCCAGCAGCGCGAAGCCCCAGGCT CACGTCGAGAGCTGCTACAAGGGCGAAACGGCATCGCTCTATTGCTACAACGGCAAGGACGACAAGCCGCAGAAC GTCGACATGGGCGACGTGGCCAAGGTGGCCCAGGCCCTCCGGGACTGGGGCCGCGGCATCGAGGGCGGCCGCTTC CTGACCATGACGGCCAAGGACGCGCCAGACTGTGCCGAGTGGGACATCTTCACCCTCAACACCGTCATGGCCCTG GCCAAGCACGTCGGCACCAACAAGGACTCGTCGGTGCTGTACGAGGACATTGCCCGCACCATCGACGGCGGCGCC GCGACCCAGGACGAAGAGGACGACAAGCGCAAGACCATCATGAGCTGCCTCGAGGCTGGCGGCTCTCTCGGTGTC GCCGTCAACAAGACGGATCCCGCCTACCACACCAAGGAGTACGAGAAGTCGGGCTACACCCCGGATGGAATCGTC ATCAAGATCGTGGCCAACGTCAAAAAGGTGGATCTTTGA |
Gene | >Hirsu2|5316 ATGTTCCTCACACAACTGGCTTCCGTCCTGGCCCTGGCTGCGGGAGCGGCGGCCAGCAGCGCGAAGCCCCAGGCT CACGTCGAGAGCTGCTACAAGGGCGAAACGGCATCGCTCTATTGCTACAACGGCAAGGACGACAAGCCGCAGAAC GTCGACATGGGCGACGTGGCCAAGGTGGCCCAGGCCCTCCGGGACTGGGGCCGCGGCATCGAGGGCGGCCGCTTC CTGACCATGACGGCCAAGGACGCGCCAGACTGTGCCGAGTGGGACATCTTCACCCTCAACACCGTCATGGCCCTG GCCAAGCACGTCGGCACCAACAAGGACTCGTCGGTGCTGTACGAGGACATTGCCCGCACCATCGACGGCGGCGCC GCGACCCAGGACGAAGAGGACGACAAGCGCAAGACCATCATGAGCTGCCTCGAGGCTGGCGGCTCTCTCGGTGTC GCCGTCAACAAGACGGATCCCGCCTACCACACCAAGGAGTACGAGAAGTCGGGCTACACCCCGGATGGAATCGTC ATCAAGATCGTGGCCAACGTCAAAAAGGTGGATCTTTGA |