Protein ID | Hirsu2|5303 |
Gene name | |
Location | Contig_265:14276..17395 |
Strand | + |
Gene length (bp) | 3119 |
Transcript length (bp) | 2703 |
Coding sequence length (bp) | 2703 |
Protein length (aa) | 901 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF03707 | MHYT | Bacterial signalling protein N terminal repeat | 9.1E-11 | 67 | 124 |
PF03707 | MHYT | Bacterial signalling protein N terminal repeat | 2.6E-04 | 136 | 188 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O34311|YKOW_BACSU | Signaling protein YkoW OS=Bacillus subtilis (strain 168) GN=ykoW PE=3 SV=2 | 19 | 218 | 8.0E-14 |
sp|Q9I310|Y1727_PSEAE | Uncharacterized signaling protein PA1727 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA1727 PE=3 SV=1 | 19 | 258 | 7.0E-10 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 40 | 0.5 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 20 | 42 | 22 |
2 | 55 | 77 | 22 |
3 | 97 | 119 | 22 |
4 | 124 | 146 | 22 |
5 | 161 | 183 | 22 |
6 | 236 | 258 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|5303 MSSTQELLQEFSGELVPFSFHAGFVCLSYIISLIGTGSTLELMRRRTSHKGLHNLLLLIGAAASMGGIAIWSMHF IGNRAIYILDGREDLQISYSTGMTVLSLLVPILVLLLAFLAVSVNDRIRWWRIGLAGLLSGGAICGMHYLADRSI SNYQTSYERGYVVGAAMIAISASTTALTLFFVFETAWNIVWWKRFGCAMVLAGAVSGMHWCAAVGTSYRLLQITS LHKGMSRHETLIMVICLSIAACIVMVISSFYSSWVKRDYASKSQQVVLAAAIFDEKGRIMVNQEGFLPSEVVTDT FMTKSHDDVFDTAHHLFHWMYRASRNWISIAESTDKMARHIRYLSQNKHSGRTGLKLVREDGSLVRDYDQIVCEL FCLAALALATKTKESLIHAGTLWDEIFATGNNPNRSNLTHTTEDANDASSERTRRHKKLAKDKSIFDGLAEKGLV RAHPQDGRGCLMFLVRHANVRKDIHKLEAAGYRFAEIHHVVDSIRSSMQIRSPDFISRLRGMSNLCGKNIAPASG VHLGMFAVRARLDHCGFDVLVRKDAKNLLPMAALPLQRLEPWQLKFIQHFWGLNPSAIMKRLDEDGNLSIQEARL ASHLRAAILSLRRDLSAAHFDDATLVSQVVQAPCSVDGDNSSPLSTCSLAVFRIMLPIHINGDQLTDFEFVPLSF FKVQQMVYAGSAHHVEFSHQVHRELSSMVHSFPELGLNGPQTRPSLRLPLHAWMARFRCSARTGNDVALQSSTRS QERLSGASSSRSWPRPLSDEISLDDYYKSHSASMSSHVNVSSPLSSTSSAEDAPHRQRQQLFGGIMVSQQITVDV QEIERSIPLSDQRRGKTQPNTKYYTSHDEKSNAVKQNNYFSTIASGKANAAITKEQGGSDFIDELLSFCMERRDT * |
Coding | >Hirsu2|5303 ATGTCGTCGACCCAAGAACTGCTTCAAGAATTCTCGGGCGAGCTGGTCCCATTCTCTTTTCATGCCGGCTTTGTT TGTTTGAGCTATATCATCAGCCTCATCGGAACTGGCTCGACGCTAGAGTTGATGCGGAGGAGGACGTCGCATAAG GGGCTTCACAACCTCTTGCTGTTGATTGGTGCTGCCGCATCCATGGGAGGCATTGCCATCTGGTCTATGCATTTT ATCGGCAACAGAGCGATATATATCCTCGACGGTCGCGAGGACCTTCAGATCTCGTACTCTACGGGCATGACGGTT TTGTCACTGCTTGTCCCTATTCTCGTGCTGCTACTCGCTTTTCTCGCCGTGAGCGTCAACGATCGAATCCGCTGG TGGCGTATAGGTCTGGCCGGCTTATTGTCCGGCGGTGCAATATGTGGAATGCATTACCTAGCGGATAGGTCGATC AGCAACTACCAAACCTCCTACGAGCGTGGCTATGTGGTCGGCGCAGCCATGATTGCCATATCCGCGAGCACTACG GCTCTGACCCTTTTCTTTGTTTTCGAAACGGCATGGAACATTGTCTGGTGGAAGCGGTTTGGGTGCGCCATGGTA CTTGCCGGGGCCGTTTCTGGCATGCACTGGTGCGCAGCCGTTGGCACGAGCTATAGGCTTCTCCAGATCACTTCC CTTCACAAAGGGATGTCCCGACACGAGACGTTAATCATGGTCATCTGCTTGTCTATTGCTGCATGCATCGTCATG GTCATTAGCAGCTTCTATTCGAGCTGGGTAAAACGAGACTATGCCAGCAAATCGCAGCAGGTCGTTCTCGCTGCA GCAATATTCGACGAGAAAGGTAGAATCATGGTCAACCAAGAAGGTTTTCTCCCGAGCGAAGTGGTCACCGACACG TTCATGACCAAGTCACACGACGATGTTTTCGATACGGCCCATCATCTCTTCCACTGGATGTACCGGGCCTCGCGT AATTGGATCAGCATCGCGGAGTCTACGGACAAAATGGCTCGTCATATACGATATCTTTCGCAAAACAAGCATAGC GGCAGAACAGGGCTTAAGCTAGTCAGGGAGGATGGTTCATTGGTCCGTGATTACGATCAAATTGTCTGCGAGTTA TTTTGTCTCGCGGCACTAGCCCTTGCAACAAAGACAAAAGAGTCTCTAATCCACGCCGGCACGCTTTGGGACGAG ATATTCGCCACTGGCAACAATCCGAATCGTTCGAATCTGACTCACACGACAGAAGATGCCAACGACGCTAGCTCG GAAAGGACTCGCCGGCACAAGAAGCTAGCGAAAGACAAATCCATTTTTGACGGTCTGGCCGAGAAAGGGCTGGTC CGCGCTCACCCACAAGACGGCCGGGGCTGTCTCATGTTTCTTGTTCGTCACGCCAACGTCAGGAAGGATATCCAC AAGCTCGAAGCCGCCGGTTACCGGTTTGCCGAGATACACCACGTCGTCGATAGCATCCGATCCAGTATGCAGATC AGAAGCCCAGACTTCATATCCAGGCTGAGAGGGATGTCGAACCTTTGCGGTAAGAATATCGCTCCGGCCTCGGGG GTTCATCTCGGCATGTTCGCCGTCCGGGCTAGACTTGACCACTGCGGTTTCGATGTGCTCGTGCGAAAAGATGCC AAAAACCTTCTGCCTATGGCAGCGCTGCCGCTTCAACGTCTCGAGCCGTGGCAGTTGAAGTTTATTCAGCATTTT TGGGGCCTGAATCCGTCGGCCATCATGAAGCGGCTCGATGAAGACGGAAACCTCTCCATACAGGAAGCCAGGTTG GCGTCTCATTTGCGCGCTGCCATTCTCTCTCTCCGTCGAGATCTGAGTGCCGCCCACTTCGACGATGCCACTCTC GTGTCTCAAGTCGTACAAGCTCCTTGTTCTGTCGACGGCGATAACAGCTCGCCGCTGTCGACGTGCTCGCTCGCT GTGTTCCGAATAATGCTCCCGATTCACATAAACGGGGATCAACTAACTGACTTTGAGTTTGTGCCCCTGAGTTTC TTCAAAGTGCAGCAAATGGTCTATGCAGGGTCAGCACACCATGTGGAGTTTTCCCATCAAGTACACCGTGAACTA TCGTCCATGGTCCACAGCTTCCCCGAGCTAGGTCTCAATGGGCCCCAAACCCGGCCTTCTTTGCGTCTGCCATTA CATGCTTGGATGGCCAGATTTCGATGCAGTGCCCGCACAGGCAACGATGTCGCCCTGCAGTCGTCGACCAGGAGT CAGGAACGCTTATCAGGGGCTTCTTCGAGCCGAAGCTGGCCACGCCCCCTGAGTGATGAAATCAGCCTTGACGAC TATTACAAAAGTCACTCTGCCAGCATGTCATCACATGTAAACGTTTCGTCGCCCCTGAGCTCCACGTCAAGTGCT GAGGATGCTCCTCATCGCCAACGCCAGCAATTATTTGGCGGTATCATGGTCTCGCAACAGATTACAGTGGATGTC CAAGAGATAGAGAGGAGCATCCCGCTCAGCGACCAGCGCAGAGGAAAGACACAGCCAAATACCAAATATTACACA TCGCACGACGAGAAAAGCAATGCGGTTAAGCAAAATAACTATTTCTCTACCATTGCTTCCGGCAAAGCAAACGCG GCGATAACTAAGGAGCAGGGCGGTTCCGATTTTATTGATGAGCTACTTTCATTCTGTATGGAAAGACGCGACACC TGA |
Transcript | >Hirsu2|5303 ATGTCGTCGACCCAAGAACTGCTTCAAGAATTCTCGGGCGAGCTGGTCCCATTCTCTTTTCATGCCGGCTTTGTT TGTTTGAGCTATATCATCAGCCTCATCGGAACTGGCTCGACGCTAGAGTTGATGCGGAGGAGGACGTCGCATAAG GGGCTTCACAACCTCTTGCTGTTGATTGGTGCTGCCGCATCCATGGGAGGCATTGCCATCTGGTCTATGCATTTT ATCGGCAACAGAGCGATATATATCCTCGACGGTCGCGAGGACCTTCAGATCTCGTACTCTACGGGCATGACGGTT TTGTCACTGCTTGTCCCTATTCTCGTGCTGCTACTCGCTTTTCTCGCCGTGAGCGTCAACGATCGAATCCGCTGG TGGCGTATAGGTCTGGCCGGCTTATTGTCCGGCGGTGCAATATGTGGAATGCATTACCTAGCGGATAGGTCGATC AGCAACTACCAAACCTCCTACGAGCGTGGCTATGTGGTCGGCGCAGCCATGATTGCCATATCCGCGAGCACTACG GCTCTGACCCTTTTCTTTGTTTTCGAAACGGCATGGAACATTGTCTGGTGGAAGCGGTTTGGGTGCGCCATGGTA CTTGCCGGGGCCGTTTCTGGCATGCACTGGTGCGCAGCCGTTGGCACGAGCTATAGGCTTCTCCAGATCACTTCC CTTCACAAAGGGATGTCCCGACACGAGACGTTAATCATGGTCATCTGCTTGTCTATTGCTGCATGCATCGTCATG GTCATTAGCAGCTTCTATTCGAGCTGGGTAAAACGAGACTATGCCAGCAAATCGCAGCAGGTCGTTCTCGCTGCA GCAATATTCGACGAGAAAGGTAGAATCATGGTCAACCAAGAAGGTTTTCTCCCGAGCGAAGTGGTCACCGACACG TTCATGACCAAGTCACACGACGATGTTTTCGATACGGCCCATCATCTCTTCCACTGGATGTACCGGGCCTCGCGT AATTGGATCAGCATCGCGGAGTCTACGGACAAAATGGCTCGTCATATACGATATCTTTCGCAAAACAAGCATAGC GGCAGAACAGGGCTTAAGCTAGTCAGGGAGGATGGTTCATTGGTCCGTGATTACGATCAAATTGTCTGCGAGTTA TTTTGTCTCGCGGCACTAGCCCTTGCAACAAAGACAAAAGAGTCTCTAATCCACGCCGGCACGCTTTGGGACGAG ATATTCGCCACTGGCAACAATCCGAATCGTTCGAATCTGACTCACACGACAGAAGATGCCAACGACGCTAGCTCG GAAAGGACTCGCCGGCACAAGAAGCTAGCGAAAGACAAATCCATTTTTGACGGTCTGGCCGAGAAAGGGCTGGTC CGCGCTCACCCACAAGACGGCCGGGGCTGTCTCATGTTTCTTGTTCGTCACGCCAACGTCAGGAAGGATATCCAC AAGCTCGAAGCCGCCGGTTACCGGTTTGCCGAGATACACCACGTCGTCGATAGCATCCGATCCAGTATGCAGATC AGAAGCCCAGACTTCATATCCAGGCTGAGAGGGATGTCGAACCTTTGCGGTAAGAATATCGCTCCGGCCTCGGGG GTTCATCTCGGCATGTTCGCCGTCCGGGCTAGACTTGACCACTGCGGTTTCGATGTGCTCGTGCGAAAAGATGCC AAAAACCTTCTGCCTATGGCAGCGCTGCCGCTTCAACGTCTCGAGCCGTGGCAGTTGAAGTTTATTCAGCATTTT TGGGGCCTGAATCCGTCGGCCATCATGAAGCGGCTCGATGAAGACGGAAACCTCTCCATACAGGAAGCCAGGTTG GCGTCTCATTTGCGCGCTGCCATTCTCTCTCTCCGTCGAGATCTGAGTGCCGCCCACTTCGACGATGCCACTCTC GTGTCTCAAGTCGTACAAGCTCCTTGTTCTGTCGACGGCGATAACAGCTCGCCGCTGTCGACGTGCTCGCTCGCT GTGTTCCGAATAATGCTCCCGATTCACATAAACGGGGATCAACTAACTGACTTTGAGTTTGTGCCCCTGAGTTTC TTCAAAGTGCAGCAAATGGTCTATGCAGGGTCAGCACACCATGTGGAGTTTTCCCATCAAGTACACCGTGAACTA TCGTCCATGGTCCACAGCTTCCCCGAGCTAGGTCTCAATGGGCCCCAAACCCGGCCTTCTTTGCGTCTGCCATTA CATGCTTGGATGGCCAGATTTCGATGCAGTGCCCGCACAGGCAACGATGTCGCCCTGCAGTCGTCGACCAGGAGT CAGGAACGCTTATCAGGGGCTTCTTCGAGCCGAAGCTGGCCACGCCCCCTGAGTGATGAAATCAGCCTTGACGAC TATTACAAAAGTCACTCTGCCAGCATGTCATCACATGTAAACGTTTCGTCGCCCCTGAGCTCCACGTCAAGTGCT GAGGATGCTCCTCATCGCCAACGCCAGCAATTATTTGGCGGTATCATGGTCTCGCAACAGATTACAGTGGATGTC CAAGAGATAGAGAGGAGCATCCCGCTCAGCGACCAGCGCAGAGGAAAGACACAGCCAAATACCAAATATTACACA TCGCACGACGAGAAAAGCAATGCGGTTAAGCAAAATAACTATTTCTCTACCATTGCTTCCGGCAAAGCAAACGCG GCGATAACTAAGGAGCAGGGCGGTTCCGATTTTATTGATGAGCTACTTTCATTCTGTATGGAAAGACGCGACACC TGA |
Gene | >Hirsu2|5303 ATGTCGTCGACCCAAGAACTGCTTCAAGAATTCTCGGGCGAGCTGGTCCCATTCTCTTTTCATGCCGGCTTTGTT TGTTTGAGCTATATCATCAGCCTCATCGGAACTGGCTCGACGCTAGAGTTGATGCGGAGGAGGACGTCGCATAAG GGGCTTCACAACCTGTGAGCACCAAGGGGGCAGCAGCATGACGCAGATTGAGTAGATTTTCAGAATTCCGCTAAC TTATGTGGCATAATAGCTTGCTGTTGATTGGTGCTGCCGCATCCATGGGAGGCATTGCCATCTGGTCTATGGTGT GTACAACCCCTTGACGAGAAGTTGTGCTTTCCTCAATTCCTTCTTCATTTCGTTCCCGCACTCATACACGCTTTA TGTTTGTGCGAAGCTCTCCACTAATCGTACGGCTCGCCATTGGCAGCATTTTATCGGCAACAGAGCGATATATAT CCTCGACGGTCGCGAGGACCTTCAGATCTCGTACTCTACGGGCATGACGGTTTTGTCACTGCTTGTCCCTATTCT CGTGCTGCTACTCGCTTTTCTCGCCGTGAGCGTCAACGATCGAATCCGCTGGTGGCGTATAGGTCTGGCCGGCTT ATTGTCCGGCGGTGCAATATGTGGAATGCATTACCTAGCGGATAGGTCGATCAGCAACTACCAAACCTCCTACGA GCGTGGCTATGTGGTCGGCGCAGCCATGATTGCCATATCCGCGAGCACTACGGCTCTGACCCTTTTCTTTGTTTT CGAAACGGCATGGAACATTGTCTGGTGGAAGCGGTTTGGGTGCGCCATGGTACTTGCCGGGGCCGTTTCTGGCAT GCACTGGTGCGCAGCCGTTGGCACGAGCTATAGGCTTCTCCAGATCACTTCCCTTCACAAAGGGATGTCCCGACA CGAGACGTTAATCATGGTCATCTGCTTGGTAAGTCTTACTCCCGTATTCAATTCGCAACCAAACTTCCCTCCAAA CACCGTGCCAAGGGCGCCTGCCAACGTCGAGTAACGTCAACAGTCTATTGCTGCATGCATCGTCATGGTCATTAG CAGCTTCTATTCGAGCTGGGTAAAACGAGACTATGCCAGCAAATCGCAGCAGGTCGTTCTCGCTGCAGCAATATT CGACGAGAAAGGTAGAATCATGGTCAACCAAGAAGGTTTTCTCCCGAGCGAAGTGGTCACCGACACGTTCATGAC CAAGGTTCGAAAACCCCTAAATTGCACAGCCGCATAGCATCTAACATACTATATAACAAGTCACACGACGATGTT TTCGATACGGCCCATCATCTCTTCCACTGGATGTACCGGGCCTCGCGTAATTGGATCAGCATCGCGGAGTCTACG GACAAAATGGCTCGTCATATACGATATCTTTCGCAAAACAAGCATAGCGGCAGAACAGGGCTTAAGCTAGTCAGG GAGGATGGTTCATTGGTCCGTGATTACGATCAAATTGTCTGCGAGTTATTTTGTCTCGCGGCACTAGCCCTTGCA ACAAAGACAAAAGAGTCTCTAATCCACGCCGGCACGCTTTGGGACGAGATATTCGCCACTGGCAACAATCCGAAT CGTTCGAATCTGACTCACACGACAGAAGATGCCAACGACGCTAGCTCGGAAAGGACTCGCCGGCACAAGAAGCTA GCGAAAGACAAATCCATTTTTGACGGTCTGGCCGAGAAAGGGCTGGTCCGCGCTCACCCACAAGACGGCCGGGGC TGTCTCATGTTTCTTGTTCGTCACGCCAACGTCAGGAAGGATATCCACAAGCTCGAAGCCGCCGGTTACCGGTTT GCCGAGATACACCACGTCGTCGATAGCATCCGATCCAGTATGCAGATCAGAAGCCCAGACTTCATATCCAGGCTG AGAGGGATGTCGAACCTTTGCGGTAAGAATATCGCTCCGGCCTCGGGGGTTCATCTCGGCATGTTCGCCGTCCGG GCTAGACTTGACCACTGCGGTTTCGATGTGCTCGTGCGAAAAGATGCCAAAAACCTTCTGCCTATGGCAGCGCTG CCGCTTCAACGTCTCGAGCCGTGGCAGTTGAAGTTTATTCAGCATTTTTGGGGCCTGAATCCGTCGGCCATCATG AAGCGGCTCGATGAAGACGGAAACCTCTCCATACAGGAAGCCAGGTTGGCGTCTCATTTGCGCGCTGCCATTCTC TCTCTCCGTCGAGATCTGAGTGCCGCCCACTTCGACGATGCCACTCTCGTGTCTCAAGTCGTACAAGCTCCTTGT TCTGTCGACGGCGATAACAGCTCGCCGCTGTCGACGTGCTCGCTCGCTGTGTTCCGAATAATGCTCCCGATTCAC ATAAACGGGGATCAACTAACTGACTTTGAGTTTGTGCCCCTGAGTTTCTTCAAAGTGCAGCAAATGGTCTATGCA GGGTCAGCACACCATGTGGAGTTTTCCCATCAAGTACACCGTGAACTATCGTCCATGGTCCACAGCTTCCCCGAG CTAGGTCTCAATGGGCCCCAAACCCGGCCTTCTTTGCGTCTGCCATTACATGCTTGGATGGCCAGATTTCGATGC AGTGCCCGCACAGGCAACGATGTCGCCCTGCAGTCGTCGACCAGGAGTCAGGAACGCTTATCAGGGGCTTCTTCG AGCCGAAGCTGGCCACGCCCCCTGAGTGATGAAATCAGCCTTGACGACTATTACAAAAGTCACTCTGCCAGCATG TCATCACATGTAAACGTTTCGTCGCCCCTGAGCTCCACGTCAAGTGCTGAGGATGCTCCTCATCGCCAACGCCAG CAATTATTTGGCGGTATCATGGTCTCGCAACAGATTACAGTGGATGTCCAAGAGGTAAGTATGAACAAGACAGCT CGAGTCATAAAAGCTACTGTTAACGAAAAGGGGTGCGGACGTCACAGATAGAGAGGAGCATCCCGCTCAGCGACC AGCGCAGAGGAAAGACACAGCCAAATACCAAATATTACACATCGCACGACGAGAAAAGCAATGCGGTTAAGCAAA ATAACTATTTCTCTACCATTGCTTCCGGCAAAGCAAACGCGGCGATAACTAAGGAGCAGGGCGGTTCCGATTTTA TTGATGAGCTACTTTCATTCTGTATGGAAAGACGCGACACCTGA |