© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|53 |
| Gene name | |
| Location | Contig_1004:3311..5067 |
| Strand | + |
| Gene length (bp) | 1756 |
| Transcript length (bp) | 1422 |
| Coding sequence length (bp) | 1422 |
| Protein length (aa) | 474 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13621 | Cupin_8 | Cupin-like domain | 1.1E-13 | 254 | 372 |
| PF02373 | JmjC | JmjC domain, hydroxylase | 6.8E-11 | 265 | 375 |
| PF12937 | F-box-like | F-box-like | 1.1E-07 | 35 | 80 |
| PF00646 | F-box | F-box domain | 3.6E-06 | 35 | 76 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q67XX3|FB252_ARATH | F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 PE=2 SV=1 | 8 | 426 | 4.0E-82 |
| sp|Q9M9E8|FB92_ARATH | F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=3 | 31 | 376 | 3.0E-55 |
| sp|Q6Q4H1|JMJD6_HYDVU | Bifunctional arginine demethylase and lysyl-hydroxylase PSR OS=Hydra vulgaris GN=PSR PE=1 SV=1 | 143 | 375 | 4.0E-39 |
| sp|Q5R6G2|JMJD6_PONAB | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Pongo abelii GN=JMJD6 PE=2 SV=1 | 150 | 376 | 1.0E-38 |
| sp|Q6NYC1|JMJD6_HUMAN | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Homo sapiens GN=JMJD6 PE=1 SV=1 | 150 | 376 | 1.0E-38 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q67XX3|FB252_ARATH | F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 PE=2 SV=1 | 8 | 426 | 4.0E-82 |
| sp|Q9M9E8|FB92_ARATH | F-box protein At1g78280 OS=Arabidopsis thaliana GN=At1g78280 PE=2 SV=3 | 31 | 376 | 3.0E-55 |
| sp|Q6Q4H1|JMJD6_HYDVU | Bifunctional arginine demethylase and lysyl-hydroxylase PSR OS=Hydra vulgaris GN=PSR PE=1 SV=1 | 143 | 375 | 4.0E-39 |
| sp|Q5R6G2|JMJD6_PONAB | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Pongo abelii GN=JMJD6 PE=2 SV=1 | 150 | 376 | 1.0E-38 |
| sp|Q6NYC1|JMJD6_HUMAN | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Homo sapiens GN=JMJD6 PE=1 SV=1 | 150 | 376 | 1.0E-38 |
| sp|Q58DS6|JMJD6_BOVIN | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Bos taurus GN=JMJD6 PE=2 SV=1 | 105 | 376 | 2.0E-38 |
| sp|Q5ZMK5|JMJD6_CHICK | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Gallus gallus GN=JMJD6 PE=2 SV=1 | 150 | 376 | 1.0E-37 |
| sp|Q6AYK2|JMJD6_RAT | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Rattus norvegicus GN=Jmjd6 PE=2 SV=2 | 150 | 376 | 1.0E-37 |
| sp|Q9ERI5|JMJD6_MOUSE | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Mus musculus GN=Jmjd6 PE=1 SV=2 | 150 | 376 | 1.0E-37 |
| sp|Q6PFM0|JMJD6_DANRE | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Danio rerio GN=jmjd6 PE=2 SV=2 | 148 | 376 | 3.0E-37 |
| sp|Q6GND3|JMD6A_XENLA | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-A OS=Xenopus laevis GN=jmjd6-a PE=2 SV=1 | 151 | 379 | 4.0E-37 |
| sp|Q7ZX37|JMD6B_XENLA | Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6-B OS=Xenopus laevis GN=jmjd6-b PE=2 SV=1 | 150 | 379 | 7.0E-37 |
| sp|Q9VD28|JMJD6_DROME | Bifunctional arginine demethylase and lysyl-hydroxylase PSR OS=Drosophila melanogaster GN=PSR PE=2 SV=1 | 155 | 375 | 6.0E-35 |
| sp|Q9GYI4|JMJD6_CAEEL | Bifunctional arginine demethylase and lysyl-hydroxylase psr-1 OS=Caenorhabditis elegans GN=psr-1 PE=1 SV=2 | 149 | 375 | 9.0E-35 |
| sp|Q623U2|JMJD6_CAEBR | Bifunctional arginine demethylase and lysyl-hydroxylase psr-1 OS=Caenorhabditis briggsae GN=psr-1 PE=3 SV=1 | 123 | 375 | 1.0E-34 |
| sp|Q9VJ97|JMJD4_DROME | JmjC domain-containing protein 4 homolog OS=Drosophila melanogaster GN=CG7200 PE=2 SV=1 | 103 | 375 | 3.0E-11 |
| sp|Q08BY5|JMJD4_DANRE | JmjC domain-containing protein 4 OS=Danio rerio GN=jmjd4 PE=2 SV=1 | 263 | 408 | 7.0E-09 |
| sp|Q5ZHV5|JMJD4_CHICK | JmjC domain-containing protein 4 OS=Gallus gallus GN=JMJD4 PE=2 SV=1 | 263 | 376 | 1.0E-07 |
| sp|Q8BFT6|JMJD4_MOUSE | JmjC domain-containing protein 4 OS=Mus musculus GN=Jmjd4 PE=2 SV=1 | 263 | 376 | 3.0E-07 |
| sp|Q5RHD1|KDM7A_DANRE | Lysine-specific demethylase 7A OS=Danio rerio GN=kdm7a PE=2 SV=2 | 242 | 376 | 4.0E-07 |
| sp|Q9H9V9|JMJD4_HUMAN | JmjC domain-containing protein 4 OS=Homo sapiens GN=JMJD4 PE=1 SV=2 | 263 | 376 | 7.0E-07 |
| sp|P0CF52|KDM7B_DANRE | Lysine-specific demethylase 7B OS=Danio rerio GN=jhdm1db PE=2 SV=1 | 242 | 376 | 8.0E-07 |
| sp|Q3UWM4|KDM7A_MOUSE | Lysine-specific demethylase 7A OS=Mus musculus GN=Kdm7a PE=2 SV=2 | 242 | 376 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.3202 | 0.9094 | 0.0309 | 0.0167 | 0.085 | 0.0251 | 0.1146 | 0.019 | 0.0721 | 0.0095 |
| Orthofinder run ID | 4 |
| Orthogroup | 5365 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|53 MDGADSIPSHPLRVKPLGNRFLCSGPNARAGLGAWHALPDEVLMAVLEHSGQTDLLRLGSSCKFLYAFCHSDELW KAICLQLPKERSHSLQWHGSWRRTVLGLPRDREACIDCGNVFSDVLHRPFACTNVNLAQYVAGIPKVNLMPRLDS LTYDEFAERWTERPFILAKCIQEWPVCSLWTIDSLLRDYPDVEFRAEAVDWSLARYCRYMGENRDESPLYLFDRK FADKMKITVGREAGAAYWRPDCFGPDLFEVLGEERPAHRWLIVGPERSGSTFHKDPNGTSAWNAVIQGAKYWIMF PPTACVPGVYVSSDSSEVTSPLSIAEWLLTFHDEARRLPTCVEGVCRAGEMVHVPSGWWHLVVNLESGIALTQNF VPLSPSLKLVSEVLSFLRDKADQVSGFSRAVEKPYELFVERLRQAYPDVLETALDMVDRKSGKKRKWDTAVGRNA EAEGGAGFSFGFGCGDDDDDEIP* |
| Coding | >Hirsu2|53 ATGGACGGCGCCGACTCGATCCCCTCGCATCCTCTCCGGGTCAAGCCCCTTGGAAACCGCTTCCTGTGCAGCGGC CCCAACGCCCGGGCCGGCCTCGGCGCGTGGCATGCACTCCCAGACGAGGTGCTCATGGCCGTGCTGGAGCACTCC GGCCAGACGGACCTCCTCCGCCTCGGCTCCTCATGCAAATTTCTCTACGCCTTTTGTCACTCGGACGAGCTGTGG AAGGCTATATGTCTCCAGTTGCCAAAGGAGCGTAGCCACTCACTCCAATGGCATGGGTCTTGGAGACGCACCGTC CTGGGCTTGCCGCGAGACCGAGAGGCCTGCATTGACTGCGGCAACGTCTTTTCCGACGTCCTGCACCGGCCCTTT GCCTGCACCAATGTCAACCTGGCTCAGTACGTCGCCGGCATCCCCAAGGTAAACCTGATGCCACGCCTCGACAGC CTCACCTACGATGAGTTCGCCGAGCGGTGGACAGAACGGCCGTTCATCCTGGCCAAGTGCATCCAGGAATGGCCC GTCTGCTCCCTCTGGACCATCGACAGCCTGCTCCGGGACTACCCGGACGTCGAGTTCCGAGCCGAGGCCGTGGAT TGGTCCCTTGCGCGATACTGCCGCTACATGGGCGAGAACAGGGACGAGAGCCCGCTGTACCTGTTTGACCGCAAG TTTGCCGACAAGATGAAGATCACGGTCGGTCGCGAGGCCGGCGCAGCGTACTGGCGCCCCGATTGCTTCGGCCCA GACCTGTTTGAGGTGTTGGGCGAGGAGCGGCCGGCCCATCGGTGGCTGATTGTCGGCCCCGAACGCAGCGGCTCG ACCTTTCACAAAGACCCCAACGGCACGAGCGCCTGGAACGCCGTGATCCAGGGGGCCAAGTATTGGATCATGTTC CCCCCGACAGCGTGCGTGCCGGGCGTCTACGTGTCGTCGGACAGCAGCGAGGTGACGAGTCCGCTGAGCATCGCC GAGTGGCTGCTCACCTTCCACGACGAGGCACGCCGGCTGCCGACGTGTGTCGAAGGCGTCTGCCGCGCCGGGGAG ATGGTCCACGTCCCGAGCGGGTGGTGGCACCTCGTGGTGAACCTGGAGAGCGGCATCGCCCTGACGCAGAATTTC GTCCCCCTGTCGCCGAGCCTGAAGCTCGTCTCCGAGGTGCTCTCCTTTCTGCGGGACAAGGCGGACCAAGTGTCG GGCTTCTCGCGCGCGGTCGAGAAGCCGTACGAGCTCTTCGTCGAGAGACTACGGCAAGCGTACCCGGACGTCCTC GAGACGGCCCTGGACATGGTGGACAGGAAGAGCGGCAAGAAGCGCAAGTGGGACACGGCGGTCGGGCGAAACGCA GAGGCGGAGGGAGGCGCAGGCTTCAGTTTCGGGTTCGGCTGCGGCGACGACGACGACGACGAAATACCGTGA |
| Transcript | >Hirsu2|53 ATGGACGGCGCCGACTCGATCCCCTCGCATCCTCTCCGGGTCAAGCCCCTTGGAAACCGCTTCCTGTGCAGCGGC CCCAACGCCCGGGCCGGCCTCGGCGCGTGGCATGCACTCCCAGACGAGGTGCTCATGGCCGTGCTGGAGCACTCC GGCCAGACGGACCTCCTCCGCCTCGGCTCCTCATGCAAATTTCTCTACGCCTTTTGTCACTCGGACGAGCTGTGG AAGGCTATATGTCTCCAGTTGCCAAAGGAGCGTAGCCACTCACTCCAATGGCATGGGTCTTGGAGACGCACCGTC CTGGGCTTGCCGCGAGACCGAGAGGCCTGCATTGACTGCGGCAACGTCTTTTCCGACGTCCTGCACCGGCCCTTT GCCTGCACCAATGTCAACCTGGCTCAGTACGTCGCCGGCATCCCCAAGGTAAACCTGATGCCACGCCTCGACAGC CTCACCTACGATGAGTTCGCCGAGCGGTGGACAGAACGGCCGTTCATCCTGGCCAAGTGCATCCAGGAATGGCCC GTCTGCTCCCTCTGGACCATCGACAGCCTGCTCCGGGACTACCCGGACGTCGAGTTCCGAGCCGAGGCCGTGGAT TGGTCCCTTGCGCGATACTGCCGCTACATGGGCGAGAACAGGGACGAGAGCCCGCTGTACCTGTTTGACCGCAAG TTTGCCGACAAGATGAAGATCACGGTCGGTCGCGAGGCCGGCGCAGCGTACTGGCGCCCCGATTGCTTCGGCCCA GACCTGTTTGAGGTGTTGGGCGAGGAGCGGCCGGCCCATCGGTGGCTGATTGTCGGCCCCGAACGCAGCGGCTCG ACCTTTCACAAAGACCCCAACGGCACGAGCGCCTGGAACGCCGTGATCCAGGGGGCCAAGTATTGGATCATGTTC CCCCCGACAGCGTGCGTGCCGGGCGTCTACGTGTCGTCGGACAGCAGCGAGGTGACGAGTCCGCTGAGCATCGCC GAGTGGCTGCTCACCTTCCACGACGAGGCACGCCGGCTGCCGACGTGTGTCGAAGGCGTCTGCCGCGCCGGGGAG ATGGTCCACGTCCCGAGCGGGTGGTGGCACCTCGTGGTGAACCTGGAGAGCGGCATCGCCCTGACGCAGAATTTC GTCCCCCTGTCGCCGAGCCTGAAGCTCGTCTCCGAGGTGCTCTCCTTTCTGCGGGACAAGGCGGACCAAGTGTCG GGCTTCTCGCGCGCGGTCGAGAAGCCGTACGAGCTCTTCGTCGAGAGACTACGGCAAGCGTACCCGGACGTCCTC GAGACGGCCCTGGACATGGTGGACAGGAAGAGCGGCAAGAAGCGCAAGTGGGACACGGCGGTCGGGCGAAACGCA GAGGCGGAGGGAGGCGCAGGCTTCAGTTTCGGGTTCGGCTGCGGCGACGACGACGACGACGAAATACCGTGA |
| Gene | >Hirsu2|53 ATGGACGGCGCCGACTCGATCCCCTCGCATCCTCTCCGGGTCAAGCCCCTTGGAAACCGCTTCCTGTGCAGCGGC CCCAACGCCCGGGCCGGCCTCGGCGCGTGGCATGCACTCCCAGACGAGGTGCTCATGGCCGTGCTGGAGCACTCC GGCCAGACGGACCTCCTCCGCCTCGGCTCCTCATGCAAATTTCTCTACGCCTTTTGTCACTCGGACGAGCTGTGG AAGGCTATATGTCTCCAGTGAGTTCTCTCTGCTCGTGCCATCCGCCGCTCCGTCTTCATCCGCCGCTCTGCGTCG ACCCTAAGGCCCGCCTCCTGTCTGGAGCAGACAGTCCAGCGGGGACAGCACGACGAGGCAGGGTCAGGCCGCTCG CTGGCTGGACAAGGTCATCCGCGCGAGGAATCGTGATGCCCGTCGCCCTTGTTGCGGGCGGCTCTAGTAGACGAG CTTCCACCGCTTCGGCGATACTCGTACTTGTGGCTTTCCCCTGCAGCAACCGCTCCTCATTTTGTCCTAACGCTC GCAAGCTCCCCCCCCTGTATGGCCTCGCGTGACTGACTGGGCACCAATCAGGTTGCCAAAGGAGCGTAGCCACTC ACTCCAATGGCATGGGTCTTGGAGACGCACCGTCCTGGGCTTGCCGCGAGACCGAGAGGCCTGCATTGACTGCGG CAACGTCTTTTCCGACGTCCTGCACCGGCCCTTTGCCTGCACCAATGTCAACCTGGCTCAGTACGTCGCCGGCAT CCCCAAGGTAAACCTGATGCCACGCCTCGACAGCCTCACCTACGATGAGTTCGCCGAGCGGTGGACAGAACGGCC GTTCATCCTGGCCAAGTGCATCCAGGAATGGCCCGTCTGCTCCCTCTGGACCATCGACAGCCTGCTCCGGGACTA CCCGGACGTCGAGTTCCGAGCCGAGGCCGTGGATTGGTCCCTTGCGCGATACTGCCGCTACATGGGCGAGAACAG GGACGAGAGCCCGCTGTACCTGTTTGACCGCAAGTTTGCCGACAAGATGAAGATCACGGTCGGTCGCGAGGCCGG CGCAGCGTACTGGCGCCCCGATTGCTTCGGCCCAGACCTGTTTGAGGTGTTGGGCGAGGAGCGGCCGGCCCATCG GTGGCTGATTGTCGGCCCCGAACGCAGCGGCTCGACCTTTCACAAAGACCCCAACGGCACGAGCGCCTGGAACGC CGTGATCCAGGGGGCCAAGTATTGGATCATGTTCCCCCCGACAGCGTGCGTGCCGGGCGTCTACGTGTCGTCGGA CAGCAGCGAGGTGACGAGTCCGCTGAGCATCGCCGAGTGGCTGCTCACCTTCCACGACGAGGCACGCCGGCTGCC GACGTGTGTCGAAGGCGTCTGCCGCGCCGGGGAGATGGTCCACGTCCCGAGCGGGTGGTGGCACCTCGTGGTGAA CCTGGAGAGCGGCATCGCCCTGACGCAGAATTTCGTCCCCCTGTCGCCGAGCCTGAAGCTCGTCTCCGAGGTGCT CTCCTTTCTGCGGGACAAGGCGGACCAAGTGTCGGGCTTCTCGCGCGCGGTCGAGAAGCCGTACGAGCTCTTCGT CGAGAGACTACGGCAAGCGTACCCGGACGTCCTCGAGACGGCCCTGGACATGGTGGACAGGAAGAGCGGCAAGAA GCGCAAGTGGGACACGGCGGTCGGGCGAAACGCAGAGGCGGAGGGAGGCGCAGGCTTCAGTTTCGGGTTCGGCTG CGGCGACGACGACGACGACGAAATACCGTGA |