Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5267
Gene name
LocationContig_263:4875..5310
Strand+
Gene length (bp)435
Transcript length (bp)285
Coding sequence length (bp)285
Protein length (aa) 95

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08293 MRP-S33 Mitochondrial ribosomal subunit S27 1.2E-29 1 82

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P53305|RT27_YEAST Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM27 PE=1 SV=1 4 84 2.0E-11

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5267
MKAQCQVFATIYNPEGIRMGNKVLRQRLRGPAMAEYYPRKTATISDVNREFGPVLTTWDEEEEDRLEHIEELKSR
GKSAPKKKKGPPTPAQRRR*
Coding >Hirsu2|5267
ATGAAGGCGCAATGCCAAGTCTTCGCGACCATATACAATCCCGAGGGGATTCGCATGGGCAACAAGGTCCTGCGG
CAACGCTTAAGAGGGCCTGCGATGGCTGAATACTACCCGAGAAAGACAGCGACCATCTCGGATGTCAACCGCGAA
TTCGGCCCGGTCCTGACAACCTGGGACGAGGAGGAAGAGGATCGATTGGAGCACATCGAGGAGCTCAAGTCGCGC
GGCAAGAGCGCACCGAAGAAGAAGAAGGGTCCTCCCACTCCTGCGCAACGGCGTCGTTGA
Transcript >Hirsu2|5267
ATGAAGGCGCAATGCCAAGTCTTCGCGACCATATACAATCCCGAGGGGATTCGCATGGGCAACAAGGTCCTGCGG
CAACGCTTAAGAGGGCCTGCGATGGCTGAATACTACCCGAGAAAGACAGCGACCATCTCGGATGTCAACCGCGAA
TTCGGCCCGGTCCTGACAACCTGGGACGAGGAGGAAGAGGATCGATTGGAGCACATCGAGGAGCTCAAGTCGCGC
GGCAAGAGCGCACCGAAGAAGAAGAAGGGTCCTCCCACTCCTGCGCAACGGCGTCGTTGA
Gene >Hirsu2|5267
ATGAAGGTATGCAGTCTCTGACGACTCGAGCCTCGCAACTGACGCCCCTCAGGCGCAATGCCAAGTCTTCGCGAC
CATATACAATCCCGAGGGGATTCGCATGGGCAACAAGGTCCTGCGGCAACGCTTAAGAGGGCCTGCGATGGCTGA
ATACTACCCGAGAAAGACAGCGACCATCTCGGATGTCAACCGCGAATTCGGCCCGGTCCTGACAACCTGGGACGA
GGAGGAAGAGGATCGATTGGAGCACATCGAGGAGTAAGATTCGGAACCCGCCTCGCACGATTTTGCCTGCTGATA
GGTGGCGCACAGGCTCAAGTCGCGCGGCAAGAGCGCACCGAAGAAGAAGAAGGGTCCTCCCAGTGCGTACATGAT
CCTTACGGCTCAACTTCGTGTGGCTGACGCCCTACAGCTCCTGCGCAACGGCGTCGTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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