Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|5250
Gene name
Location	Contig_262:5729..6354
Strand	+
Gene length (bp)	625
Transcript length (bp)	501
Coding sequence length (bp)	501
Protein length (aa)	167

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF06140	Ifi-6-16	Interferon-induced 6-16 family	1.1E-07	43	111

Swissprot hits

(None)

GO

GO Term	Description	Terminal node
GO:0016021	integral component of membrane	Yes
GO:0005575	cellular_component	No
GO:0110165	cellular anatomical entity	No
GO:0031224	intrinsic component of membrane	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 59	0.5

Transmembrane Domains

Domain #	Start	End	Length
1	31	53	22
2	66	88	22
3	93	115	22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|5250 MDSGEHIGRAFQLAKDASSQTWGYIKEHPGAAAAFGTGAVCVAGPGLVAAPLLGAAGFSATGIQAGSLAAAVQSG LGSVVAPGLFATLQSAAMGGYGVPAVLGVVKGAGGAILAGSTARGALWGKKHDRADGGDEAEGQQEEEGSGDGVD DERSEGEAESQPQVAE*
Coding	>Hirsu2\|5250 ATGGACTCAGGCGAACACATAGGGCGAGCTTTTCAGCTCGCCAAAGATGCCTCGTCTCAGACTTGGGGCTACATC AAAGAGCACCCTGGTGCGGCCGCCGCTTTCGGCACCGGCGCCGTATGCGTTGCGGGCCCGGGCCTAGTCGCCGCG CCTCTGCTCGGTGCCGCCGGGTTTTCCGCAACGGGCATCCAGGCAGGATCGCTCGCCGCCGCCGTCCAGAGCGGC CTGGGGTCTGTCGTGGCCCCGGGCCTCTTCGCCACGCTTCAGAGCGCTGCCATGGGCGGTTACGGCGTGCCGGCC GTCCTGGGAGTCGTGAAGGGCGCCGGTGGCGCGATTCTTGCCGGTTCCACTGCGCGGGGAGCGCTCTGGGGGAAG AAGCATGATAGAGCAGACGGTGGAGATGAAGCCGAAGGTCAGCAGGAGGAAGAAGGCAGCGGAGATGGAGTAGAT GATGAGAGGAGTGAGGGAGAAGCCGAGTCTCAGCCCCAAGTCGCCGAATAA
Transcript	>Hirsu2\|5250 ATGGACTCAGGCGAACACATAGGGCGAGCTTTTCAGCTCGCCAAAGATGCCTCGTCTCAGACTTGGGGCTACATC AAAGAGCACCCTGGTGCGGCCGCCGCTTTCGGCACCGGCGCCGTATGCGTTGCGGGCCCGGGCCTAGTCGCCGCG CCTCTGCTCGGTGCCGCCGGGTTTTCCGCAACGGGCATCCAGGCAGGATCGCTCGCCGCCGCCGTCCAGAGCGGC CTGGGGTCTGTCGTGGCCCCGGGCCTCTTCGCCACGCTTCAGAGCGCTGCCATGGGCGGTTACGGCGTGCCGGCC GTCCTGGGAGTCGTGAAGGGCGCCGGTGGCGCGATTCTTGCCGGTTCCACTGCGCGGGGAGCGCTCTGGGGGAAG AAGCATGATAGAGCAGACGGTGGAGATGAAGCCGAAGGTCAGCAGGAGGAAGAAGGCAGCGGAGATGGAGTAGAT GATGAGAGGAGTGAGGGAGAAGCCGAGTCTCAGCCCCAAGTCGCCGAATAA
Gene	>Hirsu2\|5250 ATGGACTCAGGCGAACACATAGGGCGAGCTTTTCAGCTCGCCAAAGATGCCTCGTCTCAGGTTGATTAAACCGGC CGCCTCTCGAATAGAAAATTTCAGCTGACGGAATACAACAGACTTGGGGCTACATCAAAGAGCACCCTGGTGCGG CCGCCGCTTTCGGCACCGGCGCCGTATGCGTTGCGGGCCCGGGCCTAGTCGCCGCGCCTCTGCTCGGTGCCGCCG GGTTTTCCGCAACGGGCATCCAGGCAGGTTTGTTGAGCCCGCATTCCCCCCCGGTTCCACGCGAGCGACTGGCCG GCTGACGTGGTGCTCAAAAGGATCGCTCGCCGCCGCCGTCCAGAGCGGCCTGGGGTCTGTCGTGGCCCCGGGCCT CTTCGCCACGCTTCAGAGCGCTGCCATGGGCGGTTACGGCGTGCCGGCCGTCCTGGGAGTCGTGAAGGGCGCCGG TGGCGCGATTCTTGCCGGTTCCACTGCGCGGGGAGCGCTCTGGGGGAAGAAGCATGATAGAGCAGACGGTGGAGA TGAAGCCGAAGGTCAGCAGGAGGAAGAAGGCAGCGGAGATGGAGTAGATGATGAGAGGAGTGAGGGAGAAGCCGA GTCTCAGCCCCAAGTCGCCGAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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