Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5250
Gene name
LocationContig_262:5729..6354
Strand+
Gene length (bp)625
Transcript length (bp)501
Coding sequence length (bp)501
Protein length (aa) 167

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF06140 Ifi-6-16 Interferon-induced 6-16 family 3.2E-07 47 112

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0044425 membrane part No
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 59 0.5

Transmembrane Domains

Domain # Start End Length
1 31 53 22
2 66 88 22
3 93 115 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5250
MDSGEHIGRAFQLAKDASSQTWGYIKEHPGAAAAFGTGAVCVAGPGLVAAPLLGAAGFSATGIQAGSLAAAVQSG
LGSVVAPGLFATLQSAAMGGYGVPAVLGVVKGAGGAILAGSTARGALWGKKHDRADGGDEAEGQQEEEGSGDGVD
DERSEGEAESQPQVAE*
Coding >Hirsu2|5250
ATGGACTCAGGCGAACACATAGGGCGAGCTTTTCAGCTCGCCAAAGATGCCTCGTCTCAGACTTGGGGCTACATC
AAAGAGCACCCTGGTGCGGCCGCCGCTTTCGGCACCGGCGCCGTATGCGTTGCGGGCCCGGGCCTAGTCGCCGCG
CCTCTGCTCGGTGCCGCCGGGTTTTCCGCAACGGGCATCCAGGCAGGATCGCTCGCCGCCGCCGTCCAGAGCGGC
CTGGGGTCTGTCGTGGCCCCGGGCCTCTTCGCCACGCTTCAGAGCGCTGCCATGGGCGGTTACGGCGTGCCGGCC
GTCCTGGGAGTCGTGAAGGGCGCCGGTGGCGCGATTCTTGCCGGTTCCACTGCGCGGGGAGCGCTCTGGGGGAAG
AAGCATGATAGAGCAGACGGTGGAGATGAAGCCGAAGGTCAGCAGGAGGAAGAAGGCAGCGGAGATGGAGTAGAT
GATGAGAGGAGTGAGGGAGAAGCCGAGTCTCAGCCCCAAGTCGCCGAATAA
Transcript >Hirsu2|5250
ATGGACTCAGGCGAACACATAGGGCGAGCTTTTCAGCTCGCCAAAGATGCCTCGTCTCAGACTTGGGGCTACATC
AAAGAGCACCCTGGTGCGGCCGCCGCTTTCGGCACCGGCGCCGTATGCGTTGCGGGCCCGGGCCTAGTCGCCGCG
CCTCTGCTCGGTGCCGCCGGGTTTTCCGCAACGGGCATCCAGGCAGGATCGCTCGCCGCCGCCGTCCAGAGCGGC
CTGGGGTCTGTCGTGGCCCCGGGCCTCTTCGCCACGCTTCAGAGCGCTGCCATGGGCGGTTACGGCGTGCCGGCC
GTCCTGGGAGTCGTGAAGGGCGCCGGTGGCGCGATTCTTGCCGGTTCCACTGCGCGGGGAGCGCTCTGGGGGAAG
AAGCATGATAGAGCAGACGGTGGAGATGAAGCCGAAGGTCAGCAGGAGGAAGAAGGCAGCGGAGATGGAGTAGAT
GATGAGAGGAGTGAGGGAGAAGCCGAGTCTCAGCCCCAAGTCGCCGAATAA
Gene >Hirsu2|5250
ATGGACTCAGGCGAACACATAGGGCGAGCTTTTCAGCTCGCCAAAGATGCCTCGTCTCAGGTTGATTAAACCGGC
CGCCTCTCGAATAGAAAATTTCAGCTGACGGAATACAACAGACTTGGGGCTACATCAAAGAGCACCCTGGTGCGG
CCGCCGCTTTCGGCACCGGCGCCGTATGCGTTGCGGGCCCGGGCCTAGTCGCCGCGCCTCTGCTCGGTGCCGCCG
GGTTTTCCGCAACGGGCATCCAGGCAGGTTTGTTGAGCCCGCATTCCCCCCCGGTTCCACGCGAGCGACTGGCCG
GCTGACGTGGTGCTCAAAAGGATCGCTCGCCGCCGCCGTCCAGAGCGGCCTGGGGTCTGTCGTGGCCCCGGGCCT
CTTCGCCACGCTTCAGAGCGCTGCCATGGGCGGTTACGGCGTGCCGGCCGTCCTGGGAGTCGTGAAGGGCGCCGG
TGGCGCGATTCTTGCCGGTTCCACTGCGCGGGGAGCGCTCTGGGGGAAGAAGCATGATAGAGCAGACGGTGGAGA
TGAAGCCGAAGGTCAGCAGGAGGAAGAAGGCAGCGGAGATGGAGTAGATGATGAGAGGAGTGAGGGAGAAGCCGA
GTCTCAGCCCCAAGTCGCCGAATAA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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