Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5248
Gene name
LocationContig_262:1847..2979
Strand-
Gene length (bp)1132
Transcript length (bp)849
Coding sequence length (bp)849
Protein length (aa) 283

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05817 Ribophorin_II Oligosaccharyltransferase subunit Ribophorin II 3.9E-32 40 273

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q02795|OSTD_YEAST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWP1 PE=1 SV=1 55 270 1.0E-14
sp|P04844|RPN2_HUMAN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Homo sapiens GN=RPN2 PE=1 SV=3 76 279 1.0E-13
sp|P25235|RPN2_RAT Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Rattus norvegicus GN=Rpn2 PE=2 SV=2 76 279 2.0E-13
sp|Q93Z16|RPN2_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana GN=RPN2 PE=2 SV=1 52 273 2.0E-13
sp|Q9DBG6|RPN2_MOUSE Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Mus musculus GN=Rpn2 PE=1 SV=1 76 279 2.0E-13
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Swissprot ID Swissprot Description Start End E-value
sp|Q02795|OSTD_YEAST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWP1 PE=1 SV=1 55 270 1.0E-14
sp|P04844|RPN2_HUMAN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Homo sapiens GN=RPN2 PE=1 SV=3 76 279 1.0E-13
sp|P25235|RPN2_RAT Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Rattus norvegicus GN=Rpn2 PE=2 SV=2 76 279 2.0E-13
sp|Q93Z16|RPN2_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana GN=RPN2 PE=2 SV=1 52 273 2.0E-13
sp|Q9DBG6|RPN2_MOUSE Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Mus musculus GN=Rpn2 PE=1 SV=1 76 279 2.0E-13
sp|Q5RBM1|RPN2_PONAB Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Pongo abelii GN=RPN2 PE=2 SV=1 76 279 8.0E-13
sp|Q3SZI6|RPN2_BOVIN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Bos taurus GN=RPN2 PE=2 SV=1 76 279 1.0E-11
sp|P91390|RPN2_CAEEL Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Caenorhabditis elegans GN=ostd-1 PE=3 SV=1 8 281 1.0E-10
sp|O74943|YJB6_SCHPO Uncharacterized protein C553.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC553.06 PE=3 SV=1 12 250 2.0E-09
sp|Q9GL01|RPN2_PIG Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Sus scrofa GN=RPN2 PE=2 SV=1 76 279 8.0E-08
sp|Q5N7W3|RPN2_ORYSJ Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Oryza sativa subsp. japonica GN=RPN2 PE=2 SV=1 163 270 2.0E-06
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GO

GO Term Description Terminal node
GO:0006487 protein N-linked glycosylation Yes
GO:0008250 oligosaccharyltransferase complex Yes
GO:0016021 integral component of membrane Yes
GO:0043412 macromolecule modification No
GO:0098796 membrane protein complex No
GO:0019538 protein metabolic process No
GO:0071704 organic substance metabolic process No
GO:0043413 macromolecule glycosylation No
GO:0008150 biological_process No
GO:0031224 intrinsic component of membrane No
GO:0008152 metabolic process No
GO:0032991 protein-containing complex No
GO:0070085 glycosylation No
GO:1990234 transferase complex No
GO:0006807 nitrogen compound metabolic process No
GO:0140534 endoplasmic reticulum protein-containing complex No
GO:0044238 primary metabolic process No
GO:1902494 catalytic complex No
GO:1901564 organonitrogen compound metabolic process No
GO:0110165 cellular anatomical entity No
GO:0006486 protein glycosylation No
GO:0005575 cellular_component No
GO:0036211 protein modification process No
GO:0043170 macromolecule metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Endoplasmic reticulum Signal peptide 0.1052 0.1033 0.0974 0.0849 0.0571 0.0153 0.8163 0.209 0.4595 0.015

SignalP

SignalP signal predicted Location Score
Yes 1 - 18 0.948057

Transmembrane Domains

Domain # Start End Length
1 186 208 22
2 221 243 22
3 248 267 19

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup6172
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|5700
Ophiocordyceps australis map64 (Brazil) OphauB2|7862
Ophiocordyceps camponoti-floridani Ophcf2|02360
Ophiocordyceps kimflemingae Ophio5|3508
Ophiocordyceps subramaniannii Hirsu2|5248 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5248
MRFPPASTLLALAAAASAAATWTFSDGTIAVSAKAADGVVEKFTSAERVKKAVTLGHQDTIKVSLTTKDGAKAKR
PHQAFLVLREESGLEAPFPLTVKDSGKATVQITQRDLPIQLLFSSTPLRASIVLGSAGSVAGSVTPVFDVSVKKD
LNSPLPEYEAPLRYGPLPEIHHIFRADPKNPPRIVSIVFTLAVLATVPALFIGWLLLGANVCHAQKALGSAPVSH
AVFFGSVVAMEAVFFLYYSSWNLLQTLPAIGLVGATAFLSGTKALGEVQRRRLAGER*
Coding >Hirsu2|5248
ATGCGCTTCCCGCCAGCCTCGACGCTCCTGGCCCTCGCGGCCGCCGCCAGCGCCGCGGCGACCTGGACGTTTTCC
GACGGCACCATCGCCGTGTCGGCCAAGGCGGCCGACGGCGTGGTCGAGAAGTTCACGAGCGCCGAGCGCGTCAAG
AAGGCGGTGACGCTGGGCCACCAGGACACGATCAAGGTGTCGCTGACGACCAAGGACGGCGCCAAGGCGAAGCGG
CCGCACCAGGCCTTCCTCGTCCTGCGGGAGGAGTCGGGCCTCGAGGCGCCCTTCCCGCTCACGGTCAAGGACTCG
GGCAAGGCCACGGTCCAGATTACGCAGAGGGACCTGCCCATCCAGCTGCTGTTCTCGTCGACGCCCCTCCGCGCG
AGCATCGTGCTCGGCTCGGCCGGCTCCGTCGCCGGCTCCGTGACGCCCGTCTTCGACGTGTCCGTCAAGAAGGAC
CTCAATAGCCCCTTGCCCGAGTACGAGGCTCCGCTGCGATACGGCCCGCTGCCCGAGATCCACCACATCTTCCGG
GCAGACCCCAAGAACCCGCCGCGGATCGTCTCGATCGTCTTCACGCTGGCCGTCTTGGCCACCGTCCCGGCCCTC
TTCATCGGGTGGCTGCTGCTCGGGGCCAACGTGTGCCACGCCCAGAAGGCGCTGGGCAGCGCCCCCGTCTCGCAC
GCCGTCTTCTTCGGCTCCGTCGTCGCCATGGAGGCCGTCTTCTTCCTCTACTACAGCAGCTGGAACCTGCTGCAG
ACGCTGCCGGCCATAGGCCTGGTGGGCGCGACGGCCTTCCTGAGCGGCACCAAGGCCCTGGGCGAGGTCCAGCGC
CGTCGTCTCGCGGGCGAGAGGTGA
Transcript >Hirsu2|5248
ATGCGCTTCCCGCCAGCCTCGACGCTCCTGGCCCTCGCGGCCGCCGCCAGCGCCGCGGCGACCTGGACGTTTTCC
GACGGCACCATCGCCGTGTCGGCCAAGGCGGCCGACGGCGTGGTCGAGAAGTTCACGAGCGCCGAGCGCGTCAAG
AAGGCGGTGACGCTGGGCCACCAGGACACGATCAAGGTGTCGCTGACGACCAAGGACGGCGCCAAGGCGAAGCGG
CCGCACCAGGCCTTCCTCGTCCTGCGGGAGGAGTCGGGCCTCGAGGCGCCCTTCCCGCTCACGGTCAAGGACTCG
GGCAAGGCCACGGTCCAGATTACGCAGAGGGACCTGCCCATCCAGCTGCTGTTCTCGTCGACGCCCCTCCGCGCG
AGCATCGTGCTCGGCTCGGCCGGCTCCGTCGCCGGCTCCGTGACGCCCGTCTTCGACGTGTCCGTCAAGAAGGAC
CTCAATAGCCCCTTGCCCGAGTACGAGGCTCCGCTGCGATACGGCCCGCTGCCCGAGATCCACCACATCTTCCGG
GCAGACCCCAAGAACCCGCCGCGGATCGTCTCGATCGTCTTCACGCTGGCCGTCTTGGCCACCGTCCCGGCCCTC
TTCATCGGGTGGCTGCTGCTCGGGGCCAACGTGTGCCACGCCCAGAAGGCGCTGGGCAGCGCCCCCGTCTCGCAC
GCCGTCTTCTTCGGCTCCGTCGTCGCCATGGAGGCCGTCTTCTTCCTCTACTACAGCAGCTGGAACCTGCTGCAG
ACGCTGCCGGCCATAGGCCTGGTGGGCGCGACGGCCTTCCTGAGCGGCACCAAGGCCCTGGGCGAGGTCCAGCGC
CGTCGTCTCGCGGGCGAGAGGTGA
Gene >Hirsu2|5248
ATGCGCTTCCCGCCAGCCTCGACGCTCCTGGCCCTCGCGGCCGCCGCCAGCGCCGCGGCGACCTGGACGTTTTCC
GACGGCACCATCGCCGTGTCGGCCAAGGCGGCCGACGGCGTGGTCGAGAAGTAAATATGGCCTCTTCCCCTCCCC
CCTTCCGATGGTCCTGCCCGTGCCTGTTCGTGGACGGCAAGCAATAAGCGGCGGCCGGCTGACGACGAGCGCTTC
GACGGCGGCAGGTTCACGAGCGCCGAGCGCGTCAAGAAGGCGGTGACGCTGGGCCACCAGGACACGATCAAGGTG
TCGCTGACGACCAAGGACGGCGCCAAGGCGAAGCGGCCGCACCAGGCCTTCCTCGTCCTGCGGGAGGAGTCGGGC
CTCGAGGCGCCCTTCCCGCTCACGGTCAAGGACTCGGGCAAGGCCACGGTCCAGATTGTACGTTTTCTTCTTTTC
CTTGTCGGCTCGAGGCGGCGACCGGCACCGGGCAAGGGCTGACCGAGGAAACCGGCAACATGACAGACGCAGAGG
GACCTGCCCATCCAGCTGCTGTTCTCGTCGACGCCCCTCCGCGCGAGCATCGTGCTCGGCTCGGCCGGCTCCGTC
GCCGGCTCCGTGACGCCCGTCTTCGACGTGTCCGTCAAGAAGGACCTCAATAGCCCCTTGCCCGAGTACGAGGCT
CCGCTGCGATACGGCCCGCTGCCCGAGATCCACCACATCTTCCGGGCAGACCCCAAGAACCCGCCGCGGATCGTC
TCGATCGTCTTCACGCTGGCCGTCTTGGCCACCGTCCCGGCCCTCTTCATCGGGGTGAGTTCTTGCCGGGAGGCG
TCGGCCCGGTGACGAGGAGGCGTTGGCGATGCATTGCCAAGCCAAAGTGCTGACGTGTCTCCTGCAGTGGCTGCT
GCTCGGGGCCAACGTGTGCCACGCCCAGAAGGCGCTGGGCAGCGCCCCCGTCTCGCACGCCGTCTTCTTCGGCTC
CGTCGTCGCCATGGAGGCCGTCTTCTTCCTCTACTACAGCAGCTGGAACCTGCTGCAGACGCTGCCGGCCATAGG
CCTGGTGGGCGCGACGGCCTTCCTGAGCGGCACCAAGGCCCTGGGCGAGGTCCAGCGCCGTCGTCTCGCGGGCGA
GAGGTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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