Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5248
Gene name
LocationContig_262:1847..2979
Strand-
Gene length (bp)1132
Transcript length (bp)849
Coding sequence length (bp)849
Protein length (aa) 283

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05817 Ribophorin_II Oligosaccharyltransferase subunit Ribophorin II 2.4E-32 40 273

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q02795|OSTD_YEAST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWP1 PE=1 SV=1 55 270 1.0E-14
sp|P04844|RPN2_HUMAN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Homo sapiens GN=RPN2 PE=1 SV=3 76 279 1.0E-13
sp|P25235|RPN2_RAT Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Rattus norvegicus GN=Rpn2 PE=2 SV=2 76 279 2.0E-13
sp|Q93Z16|RPN2_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana GN=RPN2 PE=2 SV=1 52 273 2.0E-13
sp|Q9DBG6|RPN2_MOUSE Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Mus musculus GN=Rpn2 PE=1 SV=1 76 279 2.0E-13
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Swissprot ID Swissprot Description Start End E-value
sp|Q02795|OSTD_YEAST Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWP1 PE=1 SV=1 55 270 1.0E-14
sp|P04844|RPN2_HUMAN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Homo sapiens GN=RPN2 PE=1 SV=3 76 279 1.0E-13
sp|P25235|RPN2_RAT Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Rattus norvegicus GN=Rpn2 PE=2 SV=2 76 279 2.0E-13
sp|Q93Z16|RPN2_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana GN=RPN2 PE=2 SV=1 52 273 2.0E-13
sp|Q9DBG6|RPN2_MOUSE Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Mus musculus GN=Rpn2 PE=1 SV=1 76 279 2.0E-13
sp|Q5RBM1|RPN2_PONAB Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Pongo abelii GN=RPN2 PE=2 SV=1 76 279 8.0E-13
sp|Q3SZI6|RPN2_BOVIN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Bos taurus GN=RPN2 PE=2 SV=1 76 279 1.0E-11
sp|P91390|RPN2_CAEEL Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Caenorhabditis elegans GN=ostd-1 PE=3 SV=1 8 281 1.0E-10
sp|O74943|YJB6_SCHPO Uncharacterized protein C553.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC553.06 PE=3 SV=1 12 250 2.0E-09
sp|Q9GL01|RPN2_PIG Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Sus scrofa GN=RPN2 PE=2 SV=1 76 279 8.0E-08
sp|Q5N7W3|RPN2_ORYSJ Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Oryza sativa subsp. japonica GN=RPN2 PE=2 SV=1 163 270 2.0E-06
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0006487 protein N-linked glycosylation Yes
GO:0008250 oligosaccharyltransferase complex Yes
GO:0044446 intracellular organelle part No
GO:0006464 cellular protein modification process No
GO:0009987 cellular process No
GO:1901564 organonitrogen compound metabolic process No
GO:0032991 protein-containing complex No
GO:0006486 protein glycosylation No
GO:1990234 transferase complex No
GO:0044424 intracellular part No
GO:0044432 endoplasmic reticulum part No
GO:0019538 protein metabolic process No
GO:0044444 cytoplasmic part No
GO:0044464 cell part No
GO:0044425 membrane part No
GO:0031224 intrinsic component of membrane No
GO:0043412 macromolecule modification No
GO:0044237 cellular metabolic process No
GO:0043170 macromolecule metabolic process No
GO:1902494 catalytic complex No
GO:0043413 macromolecule glycosylation No
GO:0071704 organic substance metabolic process No
GO:0070085 glycosylation No
GO:0006807 nitrogen compound metabolic process No
GO:0044238 primary metabolic process No
GO:0044267 cellular protein metabolic process No
GO:0008152 metabolic process No
GO:0008150 biological_process No
GO:0044260 cellular macromolecule metabolic process No
GO:0036211 protein modification process No
GO:0044422 organelle part No
GO:0098796 membrane protein complex No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 186 208 22
2 221 243 22
3 248 267 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5248
MRFPPASTLLALAAAASAAATWTFSDGTIAVSAKAADGVVEKFTSAERVKKAVTLGHQDTIKVSLTTKDGAKAKR
PHQAFLVLREESGLEAPFPLTVKDSGKATVQITQRDLPIQLLFSSTPLRASIVLGSAGSVAGSVTPVFDVSVKKD
LNSPLPEYEAPLRYGPLPEIHHIFRADPKNPPRIVSIVFTLAVLATVPALFIGWLLLGANVCHAQKALGSAPVSH
AVFFGSVVAMEAVFFLYYSSWNLLQTLPAIGLVGATAFLSGTKALGEVQRRRLAGER*
Coding >Hirsu2|5248
ATGCGCTTCCCGCCAGCCTCGACGCTCCTGGCCCTCGCGGCCGCCGCCAGCGCCGCGGCGACCTGGACGTTTTCC
GACGGCACCATCGCCGTGTCGGCCAAGGCGGCCGACGGCGTGGTCGAGAAGTTCACGAGCGCCGAGCGCGTCAAG
AAGGCGGTGACGCTGGGCCACCAGGACACGATCAAGGTGTCGCTGACGACCAAGGACGGCGCCAAGGCGAAGCGG
CCGCACCAGGCCTTCCTCGTCCTGCGGGAGGAGTCGGGCCTCGAGGCGCCCTTCCCGCTCACGGTCAAGGACTCG
GGCAAGGCCACGGTCCAGATTACGCAGAGGGACCTGCCCATCCAGCTGCTGTTCTCGTCGACGCCCCTCCGCGCG
AGCATCGTGCTCGGCTCGGCCGGCTCCGTCGCCGGCTCCGTGACGCCCGTCTTCGACGTGTCCGTCAAGAAGGAC
CTCAATAGCCCCTTGCCCGAGTACGAGGCTCCGCTGCGATACGGCCCGCTGCCCGAGATCCACCACATCTTCCGG
GCAGACCCCAAGAACCCGCCGCGGATCGTCTCGATCGTCTTCACGCTGGCCGTCTTGGCCACCGTCCCGGCCCTC
TTCATCGGGTGGCTGCTGCTCGGGGCCAACGTGTGCCACGCCCAGAAGGCGCTGGGCAGCGCCCCCGTCTCGCAC
GCCGTCTTCTTCGGCTCCGTCGTCGCCATGGAGGCCGTCTTCTTCCTCTACTACAGCAGCTGGAACCTGCTGCAG
ACGCTGCCGGCCATAGGCCTGGTGGGCGCGACGGCCTTCCTGAGCGGCACCAAGGCCCTGGGCGAGGTCCAGCGC
CGTCGTCTCGCGGGCGAGAGGTGA
Transcript >Hirsu2|5248
ATGCGCTTCCCGCCAGCCTCGACGCTCCTGGCCCTCGCGGCCGCCGCCAGCGCCGCGGCGACCTGGACGTTTTCC
GACGGCACCATCGCCGTGTCGGCCAAGGCGGCCGACGGCGTGGTCGAGAAGTTCACGAGCGCCGAGCGCGTCAAG
AAGGCGGTGACGCTGGGCCACCAGGACACGATCAAGGTGTCGCTGACGACCAAGGACGGCGCCAAGGCGAAGCGG
CCGCACCAGGCCTTCCTCGTCCTGCGGGAGGAGTCGGGCCTCGAGGCGCCCTTCCCGCTCACGGTCAAGGACTCG
GGCAAGGCCACGGTCCAGATTACGCAGAGGGACCTGCCCATCCAGCTGCTGTTCTCGTCGACGCCCCTCCGCGCG
AGCATCGTGCTCGGCTCGGCCGGCTCCGTCGCCGGCTCCGTGACGCCCGTCTTCGACGTGTCCGTCAAGAAGGAC
CTCAATAGCCCCTTGCCCGAGTACGAGGCTCCGCTGCGATACGGCCCGCTGCCCGAGATCCACCACATCTTCCGG
GCAGACCCCAAGAACCCGCCGCGGATCGTCTCGATCGTCTTCACGCTGGCCGTCTTGGCCACCGTCCCGGCCCTC
TTCATCGGGTGGCTGCTGCTCGGGGCCAACGTGTGCCACGCCCAGAAGGCGCTGGGCAGCGCCCCCGTCTCGCAC
GCCGTCTTCTTCGGCTCCGTCGTCGCCATGGAGGCCGTCTTCTTCCTCTACTACAGCAGCTGGAACCTGCTGCAG
ACGCTGCCGGCCATAGGCCTGGTGGGCGCGACGGCCTTCCTGAGCGGCACCAAGGCCCTGGGCGAGGTCCAGCGC
CGTCGTCTCGCGGGCGAGAGGTGA
Gene >Hirsu2|5248
ATGCGCTTCCCGCCAGCCTCGACGCTCCTGGCCCTCGCGGCCGCCGCCAGCGCCGCGGCGACCTGGACGTTTTCC
GACGGCACCATCGCCGTGTCGGCCAAGGCGGCCGACGGCGTGGTCGAGAAGTAAATATGGCCTCTTCCCCTCCCC
CCTTCCGATGGTCCTGCCCGTGCCTGTTCGTGGACGGCAAGCAATAAGCGGCGGCCGGCTGACGACGAGCGCTTC
GACGGCGGCAGGTTCACGAGCGCCGAGCGCGTCAAGAAGGCGGTGACGCTGGGCCACCAGGACACGATCAAGGTG
TCGCTGACGACCAAGGACGGCGCCAAGGCGAAGCGGCCGCACCAGGCCTTCCTCGTCCTGCGGGAGGAGTCGGGC
CTCGAGGCGCCCTTCCCGCTCACGGTCAAGGACTCGGGCAAGGCCACGGTCCAGATTGTACGTTTTCTTCTTTTC
CTTGTCGGCTCGAGGCGGCGACCGGCACCGGGCAAGGGCTGACCGAGGAAACCGGCAACATGACAGACGCAGAGG
GACCTGCCCATCCAGCTGCTGTTCTCGTCGACGCCCCTCCGCGCGAGCATCGTGCTCGGCTCGGCCGGCTCCGTC
GCCGGCTCCGTGACGCCCGTCTTCGACGTGTCCGTCAAGAAGGACCTCAATAGCCCCTTGCCCGAGTACGAGGCT
CCGCTGCGATACGGCCCGCTGCCCGAGATCCACCACATCTTCCGGGCAGACCCCAAGAACCCGCCGCGGATCGTC
TCGATCGTCTTCACGCTGGCCGTCTTGGCCACCGTCCCGGCCCTCTTCATCGGGGTGAGTTCTTGCCGGGAGGCG
TCGGCCCGGTGACGAGGAGGCGTTGGCGATGCATTGCCAAGCCAAAGTGCTGACGTGTCTCCTGCAGTGGCTGCT
GCTCGGGGCCAACGTGTGCCACGCCCAGAAGGCGCTGGGCAGCGCCCCCGTCTCGCACGCCGTCTTCTTCGGCTC
CGTCGTCGCCATGGAGGCCGTCTTCTTCCTCTACTACAGCAGCTGGAACCTGCTGCAGACGCTGCCGGCCATAGG
CCTGGTGGGCGCGACGGCCTTCCTGAGCGGCACCAAGGCCCTGGGCGAGGTCCAGCGCCGTCGTCTCGCGGGCGA
GAGGTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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