© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5248 |
| Gene name | |
| Location | Contig_262:1847..2979 |
| Strand | - |
| Gene length (bp) | 1132 |
| Transcript length (bp) | 849 |
| Coding sequence length (bp) | 849 |
| Protein length (aa) | 283 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05817 | Ribophorin_II | Oligosaccharyltransferase subunit Ribophorin II | 3.9E-32 | 40 | 273 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q02795|OSTD_YEAST | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWP1 PE=1 SV=1 | 55 | 270 | 1.0E-14 |
| sp|P04844|RPN2_HUMAN | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Homo sapiens GN=RPN2 PE=1 SV=3 | 76 | 279 | 1.0E-13 |
| sp|P25235|RPN2_RAT | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Rattus norvegicus GN=Rpn2 PE=2 SV=2 | 76 | 279 | 2.0E-13 |
| sp|Q93Z16|RPN2_ARATH | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana GN=RPN2 PE=2 SV=1 | 52 | 273 | 2.0E-13 |
| sp|Q9DBG6|RPN2_MOUSE | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Mus musculus GN=Rpn2 PE=1 SV=1 | 76 | 279 | 2.0E-13 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q02795|OSTD_YEAST | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWP1 PE=1 SV=1 | 55 | 270 | 1.0E-14 |
| sp|P04844|RPN2_HUMAN | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Homo sapiens GN=RPN2 PE=1 SV=3 | 76 | 279 | 1.0E-13 |
| sp|P25235|RPN2_RAT | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Rattus norvegicus GN=Rpn2 PE=2 SV=2 | 76 | 279 | 2.0E-13 |
| sp|Q93Z16|RPN2_ARATH | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Arabidopsis thaliana GN=RPN2 PE=2 SV=1 | 52 | 273 | 2.0E-13 |
| sp|Q9DBG6|RPN2_MOUSE | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Mus musculus GN=Rpn2 PE=1 SV=1 | 76 | 279 | 2.0E-13 |
| sp|Q5RBM1|RPN2_PONAB | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Pongo abelii GN=RPN2 PE=2 SV=1 | 76 | 279 | 8.0E-13 |
| sp|Q3SZI6|RPN2_BOVIN | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Bos taurus GN=RPN2 PE=2 SV=1 | 76 | 279 | 1.0E-11 |
| sp|P91390|RPN2_CAEEL | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Caenorhabditis elegans GN=ostd-1 PE=3 SV=1 | 8 | 281 | 1.0E-10 |
| sp|O74943|YJB6_SCHPO | Uncharacterized protein C553.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC553.06 PE=3 SV=1 | 12 | 250 | 2.0E-09 |
| sp|Q9GL01|RPN2_PIG | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Sus scrofa GN=RPN2 PE=2 SV=1 | 76 | 279 | 8.0E-08 |
| sp|Q5N7W3|RPN2_ORYSJ | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 OS=Oryza sativa subsp. japonica GN=RPN2 PE=2 SV=1 | 163 | 270 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006487 | protein N-linked glycosylation | Yes |
| GO:0008250 | oligosaccharyltransferase complex | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0043412 | macromolecule modification | No |
| GO:0098796 | membrane protein complex | No |
| GO:0019538 | protein metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0043413 | macromolecule glycosylation | No |
| GO:0008150 | biological_process | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0008152 | metabolic process | No |
| GO:0032991 | protein-containing complex | No |
| GO:0070085 | glycosylation | No |
| GO:1990234 | transferase complex | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0140534 | endoplasmic reticulum protein-containing complex | No |
| GO:0044238 | primary metabolic process | No |
| GO:1902494 | catalytic complex | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0006486 | protein glycosylation | No |
| GO:0005575 | cellular_component | No |
| GO:0036211 | protein modification process | No |
| GO:0043170 | macromolecule metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide | 0.1052 | 0.1033 | 0.0974 | 0.0849 | 0.0571 | 0.0153 | 0.8163 | 0.209 | 0.4595 | 0.015 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.948057 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 186 | 208 | 22 |
| 2 | 221 | 243 | 22 |
| 3 | 248 | 267 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 6172 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5248 MRFPPASTLLALAAAASAAATWTFSDGTIAVSAKAADGVVEKFTSAERVKKAVTLGHQDTIKVSLTTKDGAKAKR PHQAFLVLREESGLEAPFPLTVKDSGKATVQITQRDLPIQLLFSSTPLRASIVLGSAGSVAGSVTPVFDVSVKKD LNSPLPEYEAPLRYGPLPEIHHIFRADPKNPPRIVSIVFTLAVLATVPALFIGWLLLGANVCHAQKALGSAPVSH AVFFGSVVAMEAVFFLYYSSWNLLQTLPAIGLVGATAFLSGTKALGEVQRRRLAGER* |
| Coding | >Hirsu2|5248 ATGCGCTTCCCGCCAGCCTCGACGCTCCTGGCCCTCGCGGCCGCCGCCAGCGCCGCGGCGACCTGGACGTTTTCC GACGGCACCATCGCCGTGTCGGCCAAGGCGGCCGACGGCGTGGTCGAGAAGTTCACGAGCGCCGAGCGCGTCAAG AAGGCGGTGACGCTGGGCCACCAGGACACGATCAAGGTGTCGCTGACGACCAAGGACGGCGCCAAGGCGAAGCGG CCGCACCAGGCCTTCCTCGTCCTGCGGGAGGAGTCGGGCCTCGAGGCGCCCTTCCCGCTCACGGTCAAGGACTCG GGCAAGGCCACGGTCCAGATTACGCAGAGGGACCTGCCCATCCAGCTGCTGTTCTCGTCGACGCCCCTCCGCGCG AGCATCGTGCTCGGCTCGGCCGGCTCCGTCGCCGGCTCCGTGACGCCCGTCTTCGACGTGTCCGTCAAGAAGGAC CTCAATAGCCCCTTGCCCGAGTACGAGGCTCCGCTGCGATACGGCCCGCTGCCCGAGATCCACCACATCTTCCGG GCAGACCCCAAGAACCCGCCGCGGATCGTCTCGATCGTCTTCACGCTGGCCGTCTTGGCCACCGTCCCGGCCCTC TTCATCGGGTGGCTGCTGCTCGGGGCCAACGTGTGCCACGCCCAGAAGGCGCTGGGCAGCGCCCCCGTCTCGCAC GCCGTCTTCTTCGGCTCCGTCGTCGCCATGGAGGCCGTCTTCTTCCTCTACTACAGCAGCTGGAACCTGCTGCAG ACGCTGCCGGCCATAGGCCTGGTGGGCGCGACGGCCTTCCTGAGCGGCACCAAGGCCCTGGGCGAGGTCCAGCGC CGTCGTCTCGCGGGCGAGAGGTGA |
| Transcript | >Hirsu2|5248 ATGCGCTTCCCGCCAGCCTCGACGCTCCTGGCCCTCGCGGCCGCCGCCAGCGCCGCGGCGACCTGGACGTTTTCC GACGGCACCATCGCCGTGTCGGCCAAGGCGGCCGACGGCGTGGTCGAGAAGTTCACGAGCGCCGAGCGCGTCAAG AAGGCGGTGACGCTGGGCCACCAGGACACGATCAAGGTGTCGCTGACGACCAAGGACGGCGCCAAGGCGAAGCGG CCGCACCAGGCCTTCCTCGTCCTGCGGGAGGAGTCGGGCCTCGAGGCGCCCTTCCCGCTCACGGTCAAGGACTCG GGCAAGGCCACGGTCCAGATTACGCAGAGGGACCTGCCCATCCAGCTGCTGTTCTCGTCGACGCCCCTCCGCGCG AGCATCGTGCTCGGCTCGGCCGGCTCCGTCGCCGGCTCCGTGACGCCCGTCTTCGACGTGTCCGTCAAGAAGGAC CTCAATAGCCCCTTGCCCGAGTACGAGGCTCCGCTGCGATACGGCCCGCTGCCCGAGATCCACCACATCTTCCGG GCAGACCCCAAGAACCCGCCGCGGATCGTCTCGATCGTCTTCACGCTGGCCGTCTTGGCCACCGTCCCGGCCCTC TTCATCGGGTGGCTGCTGCTCGGGGCCAACGTGTGCCACGCCCAGAAGGCGCTGGGCAGCGCCCCCGTCTCGCAC GCCGTCTTCTTCGGCTCCGTCGTCGCCATGGAGGCCGTCTTCTTCCTCTACTACAGCAGCTGGAACCTGCTGCAG ACGCTGCCGGCCATAGGCCTGGTGGGCGCGACGGCCTTCCTGAGCGGCACCAAGGCCCTGGGCGAGGTCCAGCGC CGTCGTCTCGCGGGCGAGAGGTGA |
| Gene | >Hirsu2|5248 ATGCGCTTCCCGCCAGCCTCGACGCTCCTGGCCCTCGCGGCCGCCGCCAGCGCCGCGGCGACCTGGACGTTTTCC GACGGCACCATCGCCGTGTCGGCCAAGGCGGCCGACGGCGTGGTCGAGAAGTAAATATGGCCTCTTCCCCTCCCC CCTTCCGATGGTCCTGCCCGTGCCTGTTCGTGGACGGCAAGCAATAAGCGGCGGCCGGCTGACGACGAGCGCTTC GACGGCGGCAGGTTCACGAGCGCCGAGCGCGTCAAGAAGGCGGTGACGCTGGGCCACCAGGACACGATCAAGGTG TCGCTGACGACCAAGGACGGCGCCAAGGCGAAGCGGCCGCACCAGGCCTTCCTCGTCCTGCGGGAGGAGTCGGGC CTCGAGGCGCCCTTCCCGCTCACGGTCAAGGACTCGGGCAAGGCCACGGTCCAGATTGTACGTTTTCTTCTTTTC CTTGTCGGCTCGAGGCGGCGACCGGCACCGGGCAAGGGCTGACCGAGGAAACCGGCAACATGACAGACGCAGAGG GACCTGCCCATCCAGCTGCTGTTCTCGTCGACGCCCCTCCGCGCGAGCATCGTGCTCGGCTCGGCCGGCTCCGTC GCCGGCTCCGTGACGCCCGTCTTCGACGTGTCCGTCAAGAAGGACCTCAATAGCCCCTTGCCCGAGTACGAGGCT CCGCTGCGATACGGCCCGCTGCCCGAGATCCACCACATCTTCCGGGCAGACCCCAAGAACCCGCCGCGGATCGTC TCGATCGTCTTCACGCTGGCCGTCTTGGCCACCGTCCCGGCCCTCTTCATCGGGGTGAGTTCTTGCCGGGAGGCG TCGGCCCGGTGACGAGGAGGCGTTGGCGATGCATTGCCAAGCCAAAGTGCTGACGTGTCTCCTGCAGTGGCTGCT GCTCGGGGCCAACGTGTGCCACGCCCAGAAGGCGCTGGGCAGCGCCCCCGTCTCGCACGCCGTCTTCTTCGGCTC CGTCGTCGCCATGGAGGCCGTCTTCTTCCTCTACTACAGCAGCTGGAACCTGCTGCAGACGCTGCCGGCCATAGG CCTGGTGGGCGCGACGGCCTTCCTGAGCGGCACCAAGGCCCTGGGCGAGGTCCAGCGCCGTCGTCTCGCGGGCGA GAGGTGA |