© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5219 |
| Gene name | |
| Location | Contig_2600:57..797 |
| Strand | + |
| Gene length (bp) | 740 |
| Transcript length (bp) | 621 |
| Coding sequence length (bp) | 621 |
| Protein length (aa) | 207 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 9.8E-10 | 6 | 131 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q10097|YAOI_SCHPO | Uncharacterized transporter C11D3.18C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.18c PE=3 SV=1 | 6 | 204 | 2.0E-34 |
| sp|Q9US44|YIZG_SCHPO | Uncharacterized transporter C1002.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1002.16c PE=3 SV=1 | 6 | 205 | 3.0E-34 |
| sp|P53322|TNA1_YEAST | High-affinity nicotinic acid transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TNA1 PE=1 SV=1 | 6 | 205 | 2.0E-31 |
| sp|Q9P6J0|YHDC_SCHPO | Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1 | 6 | 193 | 7.0E-24 |
| sp|Q9US37|YFZ4_SCHPO | Uncharacterized transporter C1039.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.04 PE=3 SV=1 | 5 | 204 | 3.0E-14 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Golgi apparatus | 0.1632 | 0.0736 | 0.1228 | 0.3088 | 0.1608 | 0.0604 | 0.5259 | 0.0769 | 0.7236 | 0.0038 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 26 | 48 | 22 |
| 2 | 55 | 74 | 19 |
| 3 | 79 | 101 | 22 |
| 4 | 114 | 136 | 22 |
| 5 | 146 | 168 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 3024 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5219 LPKKKGFSTFLPTIINDLGRWTLPQVQLLTVPCYFVGAAAYMAAAAASDRTQRRGPFCVAFGLVSILGYALLLAD AAPALHYFACFLVAAGLYVVVGLPLAWLPDNSPRYGKRATATGLQLTVGNVAGILSGFIYPKEDAPRYVRGHAIT LAMVAMGTAIYGLMWLWFRRENRRREREPLAEEHRRMKEDELEELGDDSPRYRYMT* |
| Coding | >Hirsu2|5219 CTGCCAAAAAAAAAAGGCTTCTCGACCTTCCTGCCGACCATCATCAACGACCTCGGCCGCTGGACGCTGCCGCAG GTCCAGCTGCTGACGGTGCCGTGCTACTTCGTCGGCGCCGCCGCCTACATGGCCGCCGCCGCCGCCTCGGACCGC ACCCAGCGCCGCGGGCCCTTCTGCGTCGCCTTCGGCCTCGTCAGCATCCTCGGCTACGCCCTGCTGCTGGCCGAC GCCGCGCCCGCCCTGCACTACTTCGCCTGCTTCCTCGTCGCCGCCGGCCTGTACGTCGTCGTCGGCCTGCCGCTC GCCTGGCTGCCCGACAACTCGCCGCGCTACGGCAAGCGCGCGACCGCCACGGGGCTGCAGCTGACCGTCGGCAAC GTCGCCGGCATCCTCTCCGGCTTCATCTACCCCAAGGAAGATGCGCCGAGGTACGTGCGCGGCCACGCCATCACG CTGGCCATGGTGGCCATGGGGACCGCCATCTATGGCCTCATGTGGCTCTGGTTCCGGCGCGAGAACCGCCGCCGC GAGCGCGAGCCGCTGGCCGAGGAGCACCGTCGGATGAAGGAGGACGAGCTGGAGGAGCTGGGCGACGACAGCCCG CGATACCGATACATGACTTGA |
| Transcript | >Hirsu2|5219 CTGCCAAAAAAAAAAGGCTTCTCGACCTTCCTGCCGACCATCATCAACGACCTCGGCCGCTGGACGCTGCCGCAG GTCCAGCTGCTGACGGTGCCGTGCTACTTCGTCGGCGCCGCCGCCTACATGGCCGCCGCCGCCGCCTCGGACCGC ACCCAGCGCCGCGGGCCCTTCTGCGTCGCCTTCGGCCTCGTCAGCATCCTCGGCTACGCCCTGCTGCTGGCCGAC GCCGCGCCCGCCCTGCACTACTTCGCCTGCTTCCTCGTCGCCGCCGGCCTGTACGTCGTCGTCGGCCTGCCGCTC GCCTGGCTGCCCGACAACTCGCCGCGCTACGGCAAGCGCGCGACCGCCACGGGGCTGCAGCTGACCGTCGGCAAC GTCGCCGGCATCCTCTCCGGCTTCATCTACCCCAAGGAAGATGCGCCGAGGTACGTGCGCGGCCACGCCATCACG CTGGCCATGGTGGCCATGGGGACCGCCATCTATGGCCTCATGTGGCTCTGGTTCCGGCGCGAGAACCGCCGCCGC GAGCGCGAGCCGCTGGCCGAGGAGCACCGTCGGATGAAGGAGGACGAGCTGGAGGAGCTGGGCGACGACAGCCCG CGATACCGATACATGACTTGA |
| Gene | >Hirsu2|5219 CTGCCAAAAAAAAAAGGCTTCTCGACCTTCCTGCCGACCATCATCAACGACCTCGGCCGCTGGACGCTGCCGCAG GTCCAGCTGCTGACGGTGCCGTGCTACTTCGTCGGCGCCGCCGCCTACATGGCCGCCGCCGCCGCCTCGGACCGC ACCCAGCGCCGCGGGCCCTTCTGCGTCGCCTTCGGCCTCGTCAGCATCCTCGGCTACGCCCTGCTGCTGGCCGAC GCCGCGCCCGCCCTGCACTACTTCGCCTGCTTCCTCGTCGCCGCCGGCCTGTACGTCGTCGTCGGCCTGCCGCTC GCCTGGCTGCCCGACAACTCGCCGCGCTACGGCAAGCGCGCGACCGCCACGGGGCTGCAGCTGACCGTCGGCAAC GTCGCCGGCATCCTCTCCGGCTTCATCTAGTGCGTCCGCTCCCTTCTTTTCTCATCTCTCCCTTCTTCTTCCTTC TCCTCCCCGTCTTCGTGTCGTCAGCCGTCGTCTTGGTCCTGTATGTTTCGCCGCTGACGACAAGACGGAAAAGCC CCAAGGAAGATGCGCCGAGGTACGTGCGCGGCCACGCCATCACGCTGGCCATGGTGGCCATGGGGACCGCCATCT ATGGCCTCATGTGGCTCTGGTTCCGGCGCGAGAACCGCCGCCGCGAGCGCGAGCCGCTGGCCGAGGAGCACCGTC GGATGAAGGAGGACGAGCTGGAGGAGCTGGGCGACGACAGCCCGCGATACCGATACATGACTTGA |