Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5170
Gene name
LocationContig_259:18928..19231
Strand+
Gene length (bp)303
Transcript length (bp)303
Coding sequence length (bp)303
Protein length (aa) 101

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular Signal peptide 0.4008 0.1594 0.8087 0.257 0.2012 0.0127 0.095 0.1002 0.106 0.0033

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup4906
Change Orthofinder run
Species Protein ID
Ophiocordyceps camponoti-rufipedis Ophun1|69
Ophiocordyceps kimflemingae Ophio5|4627
Ophiocordyceps subramaniannii Hirsu2|1417
Ophiocordyceps subramaniannii Hirsu2|4462
Ophiocordyceps subramaniannii Hirsu2|5169
Ophiocordyceps subramaniannii Hirsu2|5170 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5170
MSCIKRQGTTYLMVNRRDSLQVEACITSRDVVPECRSIYFEPRTKHCFYSDSSDQLSIAAEAFVSAHSLSCAACK
KGCDQHGGDTEPLPADAPRCEDDHD*
Coding >Hirsu2|5170
ATGTCCTGTATCAAGCGTCAAGGAACCACATATCTCATGGTGAACCGACGCGACTCACTTCAAGTTGAGGCTTGC
ATAACATCCCGTGACGTCGTGCCCGAGTGCCGCAGTATCTACTTCGAGCCGAGGACCAAGCATTGCTTCTACAGT
GATAGCTCCGACCAACTGTCCATCGCCGCAGAGGCCTTCGTCAGCGCGCACTCGCTCAGCTGCGCCGCCTGCAAG
AAGGGCTGCGATCAGCATGGCGGGGACACAGAGCCGCTTCCCGCCGACGCCCCGCGTTGTGAGGACGACCACGAC
TAG
Transcript >Hirsu2|5170
ATGTCCTGTATCAAGCGTCAAGGAACCACATATCTCATGGTGAACCGACGCGACTCACTTCAAGTTGAGGCTTGC
ATAACATCCCGTGACGTCGTGCCCGAGTGCCGCAGTATCTACTTCGAGCCGAGGACCAAGCATTGCTTCTACAGT
GATAGCTCCGACCAACTGTCCATCGCCGCAGAGGCCTTCGTCAGCGCGCACTCGCTCAGCTGCGCCGCCTGCAAG
AAGGGCTGCGATCAGCATGGCGGGGACACAGAGCCGCTTCCCGCCGACGCCCCGCGTTGTGAGGACGACCACGAC
TAG
Gene >Hirsu2|5170
ATGTCCTGTATCAAGCGTCAAGGAACCACATATCTCATGGTGAACCGACGCGACTCACTTCAAGTTGAGGCTTGC
ATAACATCCCGTGACGTCGTGCCCGAGTGCCGCAGTATCTACTTCGAGCCGAGGACCAAGCATTGCTTCTACAGT
GATAGCTCCGACCAACTGTCCATCGCCGCAGAGGCCTTCGTCAGCGCGCACTCGCTCAGCTGCGCCGCCTGCAAG
AAGGGCTGCGATCAGCATGGCGGGGACACAGAGCCGCTTCCCGCCGACGCCCCGCGTTGTGAGGACGACCACGAC
TAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail