Protein ID | Hirsu2|5122 |
Gene name | |
Location | Contig_2566:323..2333 |
Strand | - |
Gene length (bp) | 2010 |
Transcript length (bp) | 1869 |
Coding sequence length (bp) | 1869 |
Protein length (aa) | 623 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06011 | TRP | Transient receptor potential (TRP) ion channel | 9.2E-39 | 206 | 571 |
PF14558 | TRP_N | ML-like domain | 7.0E-24 | 6 | 189 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O94543|YCD3_SCHPO | Uncharacterized membrane protein C1322.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1322.03 PE=3 SV=1 | 153 | 615 | 7.0E-54 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 36 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 194 | 216 | 22 |
2 | 330 | 352 | 22 |
3 | 378 | 400 | 22 |
4 | 410 | 432 | 22 |
5 | 523 | 545 | 22 |
6 | 550 | 572 | 22 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|5122 LAAAAHVDVTNCLPDSYRSVTPARLQWQPLHAEARFDARGGRYNLEFVVWGNVTGASPGQPAPPPAGDAYWSNPN KTNGKIIETPDPDAENKKATTLYRRVTVLTYEPWNERAYFCRDLVNGSCPLGPVFDDDVDDATFPLGLPSVNMSH DFFSSYAFSSFAATMLIISGDAKADNIGCVSAIITPDLGGVAWVFRYLPLIILLFSALAVVFAGVFSPWGATNIF HWTSNYGRDTDLLRLVTPGFGDCLQYIQFVVLTGGLSLSYPGFYQPVVSQAAWSALMFNESLVTRAAPWQSVVDG IYLTNATDGYGLHQLGQLTGMADSADIWPGMMVWLCVILAGAFCSVQACFLVQWLWRRLNNISEEDLRAKNVPFS AGNVVRTLFNYMLLPLVALSAFQLVVARASPAYTVALAVLTLVLLMASATWIVALIIRTRPKSVLFDDLPTVLRF GPLYNTYSDEVAAFALVPVLLNFVRGVAIGAVQPSGVAQVVLLAICEVIQVFTLHAFRPFHPSTSMNAYHTLFSA LRAVTILLMVAFVPSLGVTEGPKGWIGYAILLVHAAVLILGFFLSALQTMVEVVARMLGAGGDDVSGLRRGGLSK IFGMRQLSRRETHRPAPTAPAT* |
Coding | >Hirsu2|5122 CTGGCCGCCGCCGCCCACGTCGACGTCACCAACTGCCTGCCCGACTCGTACCGGTCCGTCACGCCGGCCCGGCTG CAGTGGCAGCCCTTGCACGCCGAGGCCCGCTTCGACGCCCGCGGCGGCCGCTACAACCTCGAGTTCGTCGTCTGG GGCAACGTCACCGGCGCCTCCCCCGGCCAGCCCGCCCCGCCGCCCGCCGGCGACGCCTACTGGTCCAACCCGAAC AAGACCAACGGCAAGATCATCGAGACGCCCGACCCGGACGCCGAGAACAAGAAGGCCACCACGCTCTACCGCAGG GTCACCGTCCTGACCTACGAGCCGTGGAATGAGCGCGCCTACTTTTGCCGCGACCTCGTCAACGGCTCGTGCCCG CTGGGGCCCGTCTTCGACGACGACGTCGACGATGCCACCTTCCCCCTCGGCCTCCCCTCCGTCAACATGAGCCAC GACTTCTTCTCCTCGTACGCCTTCTCCTCCTTCGCCGCCACCATGCTCATCATCTCGGGCGACGCCAAGGCCGAC AACATCGGCTGCGTCTCCGCCATCATCACCCCGGACCTCGGCGGCGTCGCCTGGGTCTTCCGCTACCTGCCCCTC ATCATCCTCCTCTTCTCCGCCCTCGCCGTCGTCTTCGCCGGCGTCTTCAGCCCCTGGGGCGCCACCAACATCTTC CACTGGACCTCCAACTACGGCCGCGACACGGACCTCCTGCGCCTCGTCACCCCCGGCTTCGGCGACTGCCTCCAG TACATCCAGTTCGTCGTCCTCACCGGCGGCCTCTCCCTCAGCTACCCCGGTTTCTACCAGCCCGTCGTCAGCCAG GCCGCCTGGTCCGCCCTCATGTTCAACGAGAGCCTCGTCACCCGCGCCGCCCCCTGGCAGAGCGTCGTCGACGGC ATCTACCTCACCAACGCCACCGACGGCTACGGCCTGCACCAGCTCGGCCAGCTCACCGGCATGGCCGACAGCGCC GACATCTGGCCCGGCATGATGGTCTGGCTCTGCGTCATCCTCGCCGGCGCCTTCTGCTCCGTCCAGGCCTGCTTC CTCGTCCAGTGGCTCTGGCGCCGCCTCAACAACATCTCCGAGGAGGACCTCCGCGCCAAGAACGTGCCCTTTAGC GCCGGCAACGTCGTCCGCACCCTCTTCAACTACATGCTCCTCCCCCTCGTCGCCCTCTCCGCCTTCCAGCTCGTC GTCGCCCGCGCCTCGCCCGCCTACACCGTCGCCCTCGCCGTCCTGACGCTCGTCCTGCTCATGGCCTCGGCCACC TGGATCGTCGCCCTCATCATCCGCACCCGCCCCAAGTCGGTCCTCTTCGACGACCTGCCCACCGTCCTCCGCTTC GGGCCCCTCTACAACACCTACTCGGACGAGGTGGCCGCCTTCGCTCTCGTCCCCGTCCTGCTCAACTTCGTCCGC GGCGTCGCCATCGGCGCCGTCCAGCCGAGCGGCGTCGCCCAGGTCGTCCTGCTCGCCATCTGCGAGGTCATCCAG GTCTTCACCCTGCACGCCTTCCGCCCCTTCCACCCCTCCACCTCGATGAACGCCTACCACACCCTCTTCTCCGCC CTGCGCGCCGTCACCATCCTGCTCATGGTCGCCTTCGTCCCCAGCCTCGGCGTCACCGAGGGGCCCAAGGGCTGG ATCGGCTACGCCATCCTGCTCGTCCACGCCGCCGTCCTCATCCTCGGCTTCTTCCTCAGCGCCCTGCAGACCATG GTCGAGGTCGTCGCCCGCATGCTCGGCGCCGGCGGCGACGACGTCTCCGGCCTGAGGCGCGGCGGCCTCTCCAAG ATCTTCGGCATGCGCCAGCTGTCGCGCCGCGAGACGCACCGCCCGGCCCCGACCGCCCCGGCTACATGA |
Transcript | >Hirsu2|5122 CTGGCCGCCGCCGCCCACGTCGACGTCACCAACTGCCTGCCCGACTCGTACCGGTCCGTCACGCCGGCCCGGCTG CAGTGGCAGCCCTTGCACGCCGAGGCCCGCTTCGACGCCCGCGGCGGCCGCTACAACCTCGAGTTCGTCGTCTGG GGCAACGTCACCGGCGCCTCCCCCGGCCAGCCCGCCCCGCCGCCCGCCGGCGACGCCTACTGGTCCAACCCGAAC AAGACCAACGGCAAGATCATCGAGACGCCCGACCCGGACGCCGAGAACAAGAAGGCCACCACGCTCTACCGCAGG GTCACCGTCCTGACCTACGAGCCGTGGAATGAGCGCGCCTACTTTTGCCGCGACCTCGTCAACGGCTCGTGCCCG CTGGGGCCCGTCTTCGACGACGACGTCGACGATGCCACCTTCCCCCTCGGCCTCCCCTCCGTCAACATGAGCCAC GACTTCTTCTCCTCGTACGCCTTCTCCTCCTTCGCCGCCACCATGCTCATCATCTCGGGCGACGCCAAGGCCGAC AACATCGGCTGCGTCTCCGCCATCATCACCCCGGACCTCGGCGGCGTCGCCTGGGTCTTCCGCTACCTGCCCCTC ATCATCCTCCTCTTCTCCGCCCTCGCCGTCGTCTTCGCCGGCGTCTTCAGCCCCTGGGGCGCCACCAACATCTTC CACTGGACCTCCAACTACGGCCGCGACACGGACCTCCTGCGCCTCGTCACCCCCGGCTTCGGCGACTGCCTCCAG TACATCCAGTTCGTCGTCCTCACCGGCGGCCTCTCCCTCAGCTACCCCGGTTTCTACCAGCCCGTCGTCAGCCAG GCCGCCTGGTCCGCCCTCATGTTCAACGAGAGCCTCGTCACCCGCGCCGCCCCCTGGCAGAGCGTCGTCGACGGC ATCTACCTCACCAACGCCACCGACGGCTACGGCCTGCACCAGCTCGGCCAGCTCACCGGCATGGCCGACAGCGCC GACATCTGGCCCGGCATGATGGTCTGGCTCTGCGTCATCCTCGCCGGCGCCTTCTGCTCCGTCCAGGCCTGCTTC CTCGTCCAGTGGCTCTGGCGCCGCCTCAACAACATCTCCGAGGAGGACCTCCGCGCCAAGAACGTGCCCTTTAGC GCCGGCAACGTCGTCCGCACCCTCTTCAACTACATGCTCCTCCCCCTCGTCGCCCTCTCCGCCTTCCAGCTCGTC GTCGCCCGCGCCTCGCCCGCCTACACCGTCGCCCTCGCCGTCCTGACGCTCGTCCTGCTCATGGCCTCGGCCACC TGGATCGTCGCCCTCATCATCCGCACCCGCCCCAAGTCGGTCCTCTTCGACGACCTGCCCACCGTCCTCCGCTTC GGGCCCCTCTACAACACCTACTCGGACGAGGTGGCCGCCTTCGCTCTCGTCCCCGTCCTGCTCAACTTCGTCCGC GGCGTCGCCATCGGCGCCGTCCAGCCGAGCGGCGTCGCCCAGGTCGTCCTGCTCGCCATCTGCGAGGTCATCCAG GTCTTCACCCTGCACGCCTTCCGCCCCTTCCACCCCTCCACCTCGATGAACGCCTACCACACCCTCTTCTCCGCC CTGCGCGCCGTCACCATCCTGCTCATGGTCGCCTTCGTCCCCAGCCTCGGCGTCACCGAGGGGCCCAAGGGCTGG ATCGGCTACGCCATCCTGCTCGTCCACGCCGCCGTCCTCATCCTCGGCTTCTTCCTCAGCGCCCTGCAGACCATG GTCGAGGTCGTCGCCCGCATGCTCGGCGCCGGCGGCGACGACGTCTCCGGCCTGAGGCGCGGCGGCCTCTCCAAG ATCTTCGGCATGCGCCAGCTGTCGCGCCGCGAGACGCACCGCCCGGCCCCGACCGCCCCGGCTACATGA |
Gene | >Hirsu2|5122 CTGGCCGCCGCCGCCCACGTCGACGTCACCAACTGCCTGCCCGACTCGTACCGGTCCGTCACGCCGGCCCGGCTG CAGTGGCAGCCCTTGCACGCCGAGGCCCGCTTCGACGCCCGCGGCGGCCGCTACAACCTCGAGTTCGTCGTCTGG GGCAACGTCACCGGCGCCTCCCCCGGCCAGCCCGCCCCGCCGCCCGCCGGCGACGCCTACTGGTCCAACCCGAAC AAGACCAACGGCAAGATCATCGAGACGCCCGACCCGGACGCCGAGAACAAGAAGGCCACCACGCTCTACCGCAGG GTCACCGTCCTGACCTACGAGCCGTGGAATGAGCGCGCCTACTTTTGCCGCGACCTCGTCAACGGCTCGTGCCCG CTGGGGCCCGTCTTCGACGACGACGTCGACGATGCGTACGTGCTCGGTCCAGATGGCCTCCCCTGATGGACGCTG GCCCGACCGTGTGCTTCTGATGGACGCTGACCAGAACCTCTCCCCCCCCGTACAGCACCTTCCCCCTCGGCCTCC CCTCCGTCAACATGAGCCACGACTTCTTCTCCTCGTACGCCTTCTCCTCCTTCGCCGCCACCATGCTCATCATCT CGGGCGACGCCAAGGCCGACAACATCGGCTGCGTCTCCGCCATCATCACCCCGGACCTCGGCGGCGTCGCCTGGG TCTTCCGCTACCTGCCCCTCATCATCCTCCTCTTCTCCGCCCTCGCCGTCGTCTTCGCCGGCGTCTTCAGCCCCT GGGGCGCCACCAACATCTTCCACTGGACCTCCAACTACGGCCGCGACACGGACCTCCTGCGCCTCGTCACCCCCG GCTTCGGCGACTGCCTCCAGTACATCCAGTTCGTCGTCCTCACCGGCGGCCTCTCCCTCAGCTACCCCGGTTTCT ACCAGCCCGTCGTCAGCCAGGCCGCCTGGTCCGCCCTCATGTTCAACGAGAGCCTCGTCACCCGCGCCGCCCCCT GGCAGAGCGTCGTCGACGGCATCTACCTCACCAACGCCACCGACGGCTACGGCCTGCACCAGCTCGGCCAGCTCA CCGGCATGGCCGACAGCGCCGACATCTGGCCCGGCATGATGGTCTGGCTCTGCGTCATCCTCGCCGGCGCCTTCT GCTCCGTCCAGGCCTGCTTCCTCGTCCAGTGGCTCTGGCGCCGCCTCAACAACATCTCCGAGGAGGACCTCCGCG CCAAGAACGTGCCCTTTAGCGCCGGCAACGTCGTCCGCACCCTCTTCAACTACATGCTCCTCCCCCTCGTCGCCC TCTCCGCCTTCCAGCTCGTCGTCGCCCGCGCCTCGCCCGCCTACACCGTCGCCCTCGCCGTCCTGACGCTCGTCC TGCTCATGGCCTCGGCCACCTGGATCGTCGCCCTCATCATCCGCACCCGCCCCAAGTCGGTCCTCTTCGACGACC TGCCCACCGTCCTCCGCTTCGGGCCCCTCTACAACACCTACTCGGACGAGGTGGCCGCCTTCGCTCTCGTCCCCG TCCTGCTCAACTTCGTCCGCGGCGTCGCCATCGGCGCCGTCCAGCCGAGCGGCGTCGCCCAGGTCGTCCTGCTCG CCATCTGCGAGGTCATCCAGGTCTTCACCCTGCACGCCTTCCGCCCCTTCCACCCCTCCACCTCGATGAACGCCT ACCACACCCTCTTCTCCGCCCTGCGCGCCGTCACCATCCTGCTCATGGTCGCCTTCGTCCCCAGCCTCGGCGTCA CCGAGGGGCCCAAGGGCTGGATCGGCTACGCCATCCTGCTCGTCCACGCCGCCGTCCTCATCCTCGGCTTCTTCC TCAGCGCCCTGCAGACCATGGTCGAGGTCGTCGCCCGCATGCTCGGCGCCGGCGGCGACGACGTCTCCGGCCTGA GGCGCGGCGGCCTCTCCAAGATCTTCGGCATGCGCCAGCTGTCGCGCCGCGAGACGCACCGCCCGGCCCCGTCGA GGGCCAGCCAGCTGTCGACGGCCGGCATGCTCGACGTCGAGGACCGCCCCGGCTACATGA |