© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|5096 |
| Gene name | |
| Location | Contig_2555:886..1745 |
| Strand | - |
| Gene length (bp) | 859 |
| Transcript length (bp) | 513 |
| Coding sequence length (bp) | 513 |
| Protein length (aa) | 171 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02178 | AT_hook | AT hook motif | 5.4E+00 | 14 | 21 |
| PF02178 | AT_hook | AT hook motif | 2.3E+00 | 37 | 48 |
| PF02178 | AT_hook | AT hook motif | 7.3E-02 | 93 | 102 |
| PF02178 | AT_hook | AT hook motif | 1.7E-01 | 111 | 121 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 59 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|5096 MARTKEDATGESTPRGRGRPSLGSAGDGVKKSYVPTGRPRGRPKSDNPKAKSYVPTGRPRGRPKGSGKKKSAGGG VAPAATAASSTPKAASGTGKRGRPRKSDAGETPKVKGKRGRPSKKSLEAQDVADAADLDADADAEPLSDHMDDVA DHAMDQDNLAVESGEESDLD* |
| Coding | >Hirsu2|5096 ATGGCGCGAACCAAGGAAGACGCGACGGGCGAGTCGACGCCCCGCGGCCGCGGCCGGCCCTCGCTGGGCAGCGCC GGCGACGGCGTCAAGAAGAGCTACGTCCCCACCGGTCGCCCGCGCGGGCGCCCCAAGAGCGACAACCCCAAGGCC AAGAGCTACGTCCCCACCGGCCGCCCCCGGGGCCGCCCCAAGGGCAGCGGCAAGAAGAAGTCGGCCGGGGGTGGC GTCGCTCCCGCCGCCACCGCCGCCAGCTCCACGCCCAAGGCCGCCTCGGGCACCGGCAAGCGAGGCCGCCCCCGC AAGTCGGACGCCGGCGAGACGCCCAAGGTCAAGGGCAAGCGCGGCCGCCCCTCCAAGAAGTCGCTCGAGGCCCAG GACGTTGCCGATGCCGCCGACCTTGACGCCGACGCCGACGCCGAGCCCCTGTCGGACCACATGGACGACGTAGCC GATCACGCCATGGACCAGGACAACCTTGCGGTCGAGTCTGGAGAGGAGTCGGATCTCGACTGA |
| Transcript | >Hirsu2|5096 ATGGCGCGAACCAAGGAAGACGCGACGGGCGAGTCGACGCCCCGCGGCCGCGGCCGGCCCTCGCTGGGCAGCGCC GGCGACGGCGTCAAGAAGAGCTACGTCCCCACCGGTCGCCCGCGCGGGCGCCCCAAGAGCGACAACCCCAAGGCC AAGAGCTACGTCCCCACCGGCCGCCCCCGGGGCCGCCCCAAGGGCAGCGGCAAGAAGAAGTCGGCCGGGGGTGGC GTCGCTCCCGCCGCCACCGCCGCCAGCTCCACGCCCAAGGCCGCCTCGGGCACCGGCAAGCGAGGCCGCCCCCGC AAGTCGGACGCCGGCGAGACGCCCAAGGTCAAGGGCAAGCGCGGCCGCCCCTCCAAGAAGTCGCTCGAGGCCCAG GACGTTGCCGATGCCGCCGACCTTGACGCCGACGCCGACGCCGAGCCCCTGTCGGACCACATGGACGACGTAGCC GATCACGCCATGGACCAGGACAACCTTGCGGTCGAGTCTGGAGAGGAGTCGGATCTCGACTGA |
| Gene | >Hirsu2|5096 ATGGCGCGAACCAAGGAAGACGCGACGGGCGAGTCGACGCCCCGCGGCCGCGGCCGGCCCTCGCTGGGCAGCGCC GGCGACGGCGTCAAGAAGAGCTACGTCCCCACCGGTCGCCCGCGCGGGCGCCCCAAGAGCGACAACCCCAAGGCC AAGAGCTACGTCCCCACCGGCCGCCCCCGGGGCCGCCCCAAGGGCAGCGGCAAGAAGAAGTCGGCCGGGGGTGGC GTCGCTCCCGCCGCCACCGCCGCCAGCTCCACGCCCAAGGCCGCCTCGGGCACCGGCAAGCGAGGCCGCCCCCGC AAGTCGGACGCCGGCGAGACGCCCAAGGTCAAGGGCAAGCGCGGCCGCCCCTCCAAGAAGTCGCTCGAGGCCCAG GACGTTGCCGATGCCGCCGACCTTGACGCCGACGCCGACGCCGAGCCCCTGTCGGACCACATGGACGGTGAGTCG GCGTGACCCGGCGTGTGAGCGTGTGCGTGTGCCTGTCGCCTGTCTTGCTCTCGATTCCCACCTCTCCAGCCGTCC TCTCCCCTCTTCCTTGACCGCTTTGTCTTTTCCTCTCTGTCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCAGCATCGTGCGGGCACGTCCATCCATACAC CTACCCTCTCACAGTTCTCCGTTTTAACCATCCTCTTTCTCCGCAGACGTAGCCGATCACGCCATGGACCAGGAC AACCTTGCGGTCGAGTCTGGAGAGGTCGGTCAATCACACTCACCATGGGTCTCTGGTCTCAAAAACATGTTTGGC TGATGCTGGTTGGCAGGAGTCGGATCTCGACTGA |