© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|509 |
| Gene name | |
| Location | Contig_11:44775..45995 |
| Strand | + |
| Gene length (bp) | 1220 |
| Transcript length (bp) | 1011 |
| Coding sequence length (bp) | 1011 |
| Protein length (aa) | 337 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02386 | TrkH | Cation transport protein | 1.1E-89 | 11 | 323 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P28584|TRK2_YEAST | Low-affinity potassium transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRK2 PE=1 SV=1 | 17 | 324 | 1.0E-91 |
| sp|P12685|TRK1_YEAST | High-affinity potassium transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRK1 PE=1 SV=1 | 17 | 324 | 8.0E-90 |
| sp|P28569|TRK1_SACUV | High-affinity potassium transport protein OS=Saccharomyces uvarum GN=TRK1 PE=3 SV=1 | 17 | 324 | 4.0E-89 |
| sp|P47946|TRK1_SCHPO | Potassium transport protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trk1 PE=3 SV=2 | 17 | 335 | 8.0E-86 |
| sp|Q10065|TRK2_SCHPO | Potassium transport protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trk2 PE=2 SV=1 | 12 | 331 | 5.0E-78 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P28584|TRK2_YEAST | Low-affinity potassium transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRK2 PE=1 SV=1 | 17 | 324 | 1.0E-91 |
| sp|P12685|TRK1_YEAST | High-affinity potassium transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRK1 PE=1 SV=1 | 17 | 324 | 8.0E-90 |
| sp|P28569|TRK1_SACUV | High-affinity potassium transport protein OS=Saccharomyces uvarum GN=TRK1 PE=3 SV=1 | 17 | 324 | 4.0E-89 |
| sp|P47946|TRK1_SCHPO | Potassium transport protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trk1 PE=3 SV=2 | 17 | 335 | 8.0E-86 |
| sp|Q10065|TRK2_SCHPO | Potassium transport protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trk2 PE=2 SV=1 | 12 | 331 | 5.0E-78 |
| sp|Q84TI7|HKT1_ARATH | Sodium transporter HKT1 OS=Arabidopsis thaliana GN=HKT1 PE=1 SV=1 | 19 | 319 | 1.0E-25 |
| sp|Q54DA4|Y2412_DICDI | Putative potassium transport protein DDB_G0292412 OS=Dictyostelium discoideum GN=DDB_G0292412 PE=2 SV=1 | 17 | 317 | 2.0E-24 |
| sp|A2YGP9|HKT1_ORYSI | Cation transporter HKT1 OS=Oryza sativa subsp. indica GN=HKT1 PE=1 SV=2 | 3 | 309 | 5.0E-23 |
| sp|Q0D9S3|HKT1_ORYSJ | Cation transporter HKT1 OS=Oryza sativa subsp. japonica GN=HKT1 PE=1 SV=1 | 3 | 309 | 5.0E-23 |
| sp|Q93XI5|HKT2_ORYSI | Cation transporter HKT2 OS=Oryza sativa subsp. indica GN=HKT2 PE=1 SV=1 | 3 | 309 | 4.0E-22 |
| sp|Q8L4K5|HKT9_ORYSJ | Probable cation transporter HKT9 OS=Oryza sativa subsp. japonica GN=HKT9 PE=2 SV=1 | 7 | 278 | 6.0E-22 |
| sp|Q6H501|HKT6_ORYSJ | Probable cation transporter HKT6 OS=Oryza sativa subsp. japonica GN=HKT6 PE=2 SV=1 | 19 | 316 | 2.0E-21 |
| sp|Q8L481|HKT3_ORYSJ | Probable cation transporter HKT3 OS=Oryza sativa subsp. japonica GN=HKT3 PE=2 SV=1 | 7 | 278 | 3.0E-20 |
| sp|Q7XPF8|HKT4_ORYSJ | Cation transporter HKT4 OS=Oryza sativa subsp. japonica GN=HKT4 PE=1 SV=2 | 8 | 307 | 4.0E-20 |
| sp|A2WNZ9|HKT8_ORYSI | Cation transporter HKT8 OS=Oryza sativa subsp. indica GN=HKT8 PE=2 SV=2 | 17 | 316 | 1.0E-18 |
| sp|Q0JNB6|HKT8_ORYSJ | Cation transporter HKT8 OS=Oryza sativa subsp. japonica GN=HKT8 PE=3 SV=1 | 17 | 316 | 2.0E-18 |
| sp|Q7XPF7|HKT7_ORYSJ | Probable cation transporter HKT7 OS=Oryza sativa subsp. japonica GN=HKT7 PE=2 SV=2 | 17 | 307 | 2.0E-15 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0008324 | cation transmembrane transporter activity | Yes |
| GO:0006812 | cation transport | Yes |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0006811 | ion transport | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 50 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 48 | 70 | 22 |
| 2 | 105 | 127 | 22 |
| 3 | 163 | 185 | 22 |
| 4 | 225 | 242 | 17 |
| 5 | 255 | 277 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|509 MNRPPRLTRRRNRKHRAFYTSQSAMDNLGFTLTSDSMGHFRDAPWPMVLMAFLGLAGETLYPVLLRLVVWALWRL APGGSRTRDSLRFLLDHPRRCYTLLFPGGTTWALLGIIAALSCVDTLLIVGLDWGSAEVAGLSPGQRLAAALFQA AAARHAGMTPYNLAAVSPAVQFSLLVMMYISIYPIAMSIRTSNAYERRPVGVYRPEPVYDEDRGGSYLVRHMQQQ LSFDLWYIFLGIFLLSISESAKIKDRNEPSFAIFPIFFEVVSAYCNVGISLGHPSVNSALSTKFSVVGKLIVCAM MIRGRHRGLPHHLDRAIMLPDEHLLVDAEPDERVRP* |
| Coding | >Hirsu2|509 ATGAATCGACCGCCGAGGCTGACGAGACGACGAAACCGGAAACACAGGGCCTTCTACACGTCGCAGTCGGCCATG GACAACCTCGGCTTCACGCTCACGTCGGACAGCATGGGCCACTTCCGCGACGCGCCGTGGCCGATGGTGCTGATG GCGTTTCTGGGCCTCGCGGGCGAGACGCTGTACCCGGTGCTGCTGCGGCTCGTCGTGTGGGCGCTGTGGCGGCTG GCGCCGGGCGGCTCGCGCACACGCGACAGCCTGCGCTTCCTGCTGGACCACCCGCGGCGCTGCTACACGCTGCTC TTCCCCGGCGGCACCACCTGGGCGCTGCTGGGCATCATCGCCGCCCTCAGCTGCGTCGACACCCTGCTCATCGTC GGCCTCGACTGGGGCAGCGCCGAGGTCGCCGGCCTGTCGCCGGGCCAGCGCCTGGCCGCCGCCCTCTTCCAGGCC GCCGCCGCCCGCCATGCCGGCATGACGCCCTACAACCTGGCCGCCGTCAGCCCGGCCGTCCAGTTCAGCCTGCTG GTCATGATGTACATCTCCATCTACCCCATCGCCATGAGCATCCGCACCTCCAACGCGTACGAGCGGCGGCCCGTC GGCGTCTACCGCCCCGAGCCCGTCTACGACGAGGACAGGGGCGGCTCGTACCTGGTGCGCCACATGCAGCAGCAG CTCAGCTTCGACCTGTGGTACATCTTCCTCGGCATCTTCCTCCTCTCCATCTCCGAGTCGGCCAAAATCAAAGAT CGCAACGAGCCGTCGTTTGCCATCTTTCCGATCTTTTTCGAAGTCGTCTCGGCATACTGTAACGTCGGCATCAGC CTGGGCCATCCCAGCGTCAACTCCGCTCTCAGCACCAAGTTCTCCGTCGTCGGCAAGCTCATCGTCTGTGCCATG ATGATCCGCGGCCGTCACCGAGGCCTGCCGCACCACCTCGACCGCGCCATCATGCTGCCGGACGAGCATCTTCTC GTCGACGCGGAACCCGACGAGAGGGTCCGTCCTTGA |
| Transcript | >Hirsu2|509 ATGAATCGACCGCCGAGGCTGACGAGACGACGAAACCGGAAACACAGGGCCTTCTACACGTCGCAGTCGGCCATG GACAACCTCGGCTTCACGCTCACGTCGGACAGCATGGGCCACTTCCGCGACGCGCCGTGGCCGATGGTGCTGATG GCGTTTCTGGGCCTCGCGGGCGAGACGCTGTACCCGGTGCTGCTGCGGCTCGTCGTGTGGGCGCTGTGGCGGCTG GCGCCGGGCGGCTCGCGCACACGCGACAGCCTGCGCTTCCTGCTGGACCACCCGCGGCGCTGCTACACGCTGCTC TTCCCCGGCGGCACCACCTGGGCGCTGCTGGGCATCATCGCCGCCCTCAGCTGCGTCGACACCCTGCTCATCGTC GGCCTCGACTGGGGCAGCGCCGAGGTCGCCGGCCTGTCGCCGGGCCAGCGCCTGGCCGCCGCCCTCTTCCAGGCC GCCGCCGCCCGCCATGCCGGCATGACGCCCTACAACCTGGCCGCCGTCAGCCCGGCCGTCCAGTTCAGCCTGCTG GTCATGATGTACATCTCCATCTACCCCATCGCCATGAGCATCCGCACCTCCAACGCGTACGAGCGGCGGCCCGTC GGCGTCTACCGCCCCGAGCCCGTCTACGACGAGGACAGGGGCGGCTCGTACCTGGTGCGCCACATGCAGCAGCAG CTCAGCTTCGACCTGTGGTACATCTTCCTCGGCATCTTCCTCCTCTCCATCTCCGAGTCGGCCAAAATCAAAGAT CGCAACGAGCCGTCGTTTGCCATCTTTCCGATCTTTTTCGAAGTCGTCTCGGCATACTGTAACGTCGGCATCAGC CTGGGCCATCCCAGCGTCAACTCCGCTCTCAGCACCAAGTTCTCCGTCGTCGGCAAGCTCATCGTCTGTGCCATG ATGATCCGCGGCCGTCACCGAGGCCTGCCGCACCACCTCGACCGCGCCATCATGCTGCCGGACGAGCATCTTCTC GTCGACGCGGAACCCGACGAGAGGGTCCGTCCTTGA |
| Gene | >Hirsu2|509 ATGAATCGACCGCCGAGGCTGACGAGACGACGAAACCGGAAACACAGGGCCTTCTACACGTCGCAGTCGGCCATG GACAACCTCGGCTTCACGCTCACGTCGGACAGCATGGGCCACTTCCGCGACGCGCCGTGGCCGATGGTGCTGATG GCGTTTCTGGGCCTCGCGGGCGAGACGCTGTACCCGGTGCTGCTGCGGCTCGTCGTGTGGGCGCTGTGGCGGCTG GCGCCGGGCGGCTCGCGCACACGCGACAGCCTGCGCTTCCTGCTGGACCACCCGCGGCGCTGCTACACGCTGCTC TTCCCCGGCGGCACCACCTGGGCGCTGCTGGGCATCATCGCCGCCCTCAGCTGCGTCGACACCCTGCTCATCGTC GGCCTCGACTGGGGCAGCGCCGAGGTCGCCGGCCTGTCGCCGGGCCAGCGCCTGGCCGCCGCCCTCTTCCAGGCC GCCGCCGCCCGCCATGCCGGCATGACGCCCTACAACCTGGCCGCCGTCAGCCCGGCCGTCCAGTTCAGCCTGCTG GTCATGATGTACATCTCCATCTACCCCATCGCCATGAGCATCCGCACCTCCAACGCGTACGAGCGGCGGCCCGTC GGCGTCTACCGCCCCGAGCCCGTCTACGACGAGGACAGGGGCGGCTCGTACCTGGTGCGCCACATGCAGCAGCAG CTCAGCTTCGACCTGTGGTACATCTTCCTCGGCATCTTCCTCCTCTCCATCTCCGAGTCGGCCAAAATCAAAGAT CGCAACGAGCCGGTAAGTCCATGTCCTGCTGCTGCTGCTGCTGCTGCCGCCTTCAAGTTCAGCCTGGACTTTCGA CAGGGCGCAGGCATTGCTTTCAAGTTGTTGTCGACTCAGACTGACTCGTGGCCGGGCAAATCAATAGTCGTTTGC CATCTTTCCGATCTTTTTCGAAGTCGTCTCGGCATAGTACGTTGGAAACGCCTCAGCCCCCTTTCCGCCCCTCGT ACAAATCGCGCCCGATCAATGTGTGCTCACGTCGTGATAGCTGTAACGTCGGCATCAGCCTGGGCCATCCCAGCG TCAACTCCGCTCTCAGCACCAAGTTCTCCGTCGTCGGCAAGCTCATCGTCTGTGCCATGATGATCCGCGGCCGTC ACCGAGGCCTGCCGCACCACCTCGACCGCGCCATCATGCTGCCGGACGAGCATCTTCTCGTCGACGCGGAACCCG ACGAGAGGGTCCGTCCTTGA |