Protein ID | Hirsu2|5073 |
Gene name | |
Location | Contig_254:25248..25806 |
Strand | + |
Gene length (bp) | 558 |
Transcript length (bp) | 558 |
Coding sequence length (bp) | 558 |
Protein length (aa) | 186 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF16541 | AltA1 | Alternaria alternata allergen 1 | 1.7E-27 | 41 | 169 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.074 | 0.0393 | 0.9491 | 0.0465 | 0.076 | 0.0048 | 0.0789 | 0.1853 | 0.0753 | 0.0033 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 16 | 0.999617 |
Orthofinder run ID | 4 |
Orthogroup | 2975 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|5073 MRSFITALLLAGAALAAPANPETTKPQTCTSRSTKVRDWKVEDFDYHASYVFSTPAHQNSWGYVNFTLVNPVLHY KTVCQAASSQLQDFFYGQVVYKCTTPNGYGDEATFTFSRPSGELKINQTWYCPNEGSHFEAHGGVHLDLKCNESK WQNDHWKIGQIYSTRNIDCAHVDVQAKVTEMSGVA* |
Coding | >Hirsu2|5073 ATGCGTAGCTTCATCACCGCCCTCCTCCTCGCCGGCGCGGCCCTCGCCGCACCGGCCAACCCGGAGACGACCAAG CCGCAGACGTGCACGTCCAGGTCGACCAAGGTCAGGGACTGGAAGGTCGAGGACTTCGACTACCACGCCTCGTAC GTCTTCTCTACGCCAGCCCACCAGAACTCGTGGGGCTACGTCAACTTCACACTCGTGAACCCGGTGCTGCACTAC AAGACGGTCTGCCAGGCCGCCTCGTCCCAGCTGCAAGACTTCTTCTACGGCCAGGTCGTCTACAAGTGCACCACG CCCAACGGCTACGGCGACGAGGCCACCTTCACCTTCTCCCGGCCCTCGGGCGAGCTCAAGATCAACCAGACGTGG TACTGCCCCAACGAGGGCAGCCACTTCGAGGCCCACGGCGGCGTCCACCTCGACCTCAAGTGCAACGAGTCCAAG TGGCAGAACGACCACTGGAAGATCGGCCAGATCTACTCCACCCGCAACATCGACTGCGCCCACGTCGACGTCCAG GCCAAGGTCACCGAGATGAGCGGCGTCGCCTGA |
Transcript | >Hirsu2|5073 ATGCGTAGCTTCATCACCGCCCTCCTCCTCGCCGGCGCGGCCCTCGCCGCACCGGCCAACCCGGAGACGACCAAG CCGCAGACGTGCACGTCCAGGTCGACCAAGGTCAGGGACTGGAAGGTCGAGGACTTCGACTACCACGCCTCGTAC GTCTTCTCTACGCCAGCCCACCAGAACTCGTGGGGCTACGTCAACTTCACACTCGTGAACCCGGTGCTGCACTAC AAGACGGTCTGCCAGGCCGCCTCGTCCCAGCTGCAAGACTTCTTCTACGGCCAGGTCGTCTACAAGTGCACCACG CCCAACGGCTACGGCGACGAGGCCACCTTCACCTTCTCCCGGCCCTCGGGCGAGCTCAAGATCAACCAGACGTGG TACTGCCCCAACGAGGGCAGCCACTTCGAGGCCCACGGCGGCGTCCACCTCGACCTCAAGTGCAACGAGTCCAAG TGGCAGAACGACCACTGGAAGATCGGCCAGATCTACTCCACCCGCAACATCGACTGCGCCCACGTCGACGTCCAG GCCAAGGTCACCGAGATGAGCGGCGTCGCCTGA |
Gene | >Hirsu2|5073 ATGCGTAGCTTCATCACCGCCCTCCTCCTCGCCGGCGCGGCCCTCGCCGCACCGGCCAACCCGGAGACGACCAAG CCGCAGACGTGCACGTCCAGGTCGACCAAGGTCAGGGACTGGAAGGTCGAGGACTTCGACTACCACGCCTCGTAC GTCTTCTCTACGCCAGCCCACCAGAACTCGTGGGGCTACGTCAACTTCACACTCGTGAACCCGGTGCTGCACTAC AAGACGGTCTGCCAGGCCGCCTCGTCCCAGCTGCAAGACTTCTTCTACGGCCAGGTCGTCTACAAGTGCACCACG CCCAACGGCTACGGCGACGAGGCCACCTTCACCTTCTCCCGGCCCTCGGGCGAGCTCAAGATCAACCAGACGTGG TACTGCCCCAACGAGGGCAGCCACTTCGAGGCCCACGGCGGCGTCCACCTCGACCTCAAGTGCAACGAGTCCAAG TGGCAGAACGACCACTGGAAGATCGGCCAGATCTACTCCACCCGCAACATCGACTGCGCCCACGTCGACGTCCAG GCCAAGGTCACCGAGATGAGCGGCGTCGCCTGA |