Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|5058
Gene name
LocationContig_2537:215..1907
Strand+
Gene length (bp)1692
Transcript length (bp)1293
Coding sequence length (bp)1293
Protein length (aa) 431

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04114 Gaa1 Gaa1-like, GPI transamidase component 2.1E-132 120 424

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P39012|GAA1_YEAST GPI transamidase component GAA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAA1 PE=1 SV=1 15 380 6.0E-88
sp|Q9US48|GAA1_SCHPO GPI transamidase component gaa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gaa1 PE=3 SV=1 5 385 1.0E-80
sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein OS=Mus musculus GN=Gpaa1 PE=1 SV=3 4 395 3.0E-48
sp|O43292|GPAA1_HUMAN Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo sapiens GN=GPAA1 PE=1 SV=3 4 395 7.0E-46

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0042765 GPI-anchor transamidase complex Yes
GO:0044446 intracellular organelle part No
GO:0044432 endoplasmic reticulum part No
GO:0031224 intrinsic component of membrane No
GO:0044422 organelle part No
GO:1902494 catalytic complex No
GO:0044444 cytoplasmic part No
GO:0044464 cell part No
GO:0032991 protein-containing complex No
GO:0044424 intracellular part No
GO:0098796 membrane protein complex No
GO:0044425 membrane part No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.5

Transmembrane Domains

Domain # Start End Length
1 20 39 19
2 361 383 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|5058
MSRLLSSALSLRRDPRILKFPPYMSLLCVTIGVIWLLLLPLDDYSRRTYISENALLPGQVHTYFGGSEQNVFRAY
RQEIDSLAGLSNHEINNQLEAILQSVGIKSGRQNYTYYSAGAVFNGENVYGILQAPRGDATEAIVVVAAWRSIDG
EPNHNGVALALTLARYFKRWSLWSKDIILVVPPDSRTGTQAWVDAYHDAHDPITVASLPLKSGALQGAVAIDYPF
EQSFDGIHIIYDGTNGQLPNLDLINSIVNIAGGQMGIQTAIQDMKHHTGSYSDRLKTMLRGMLKQGLGNSPGPHS
SFIPYHVDSVTLQPFGEGWHDEMAMGRVIEGTFRSLNNLLEHLHQSFFFYLLMQRDRFVSIGTYLPSAMLLSANF
TIMAIFLWVKSGQPSPKKPVGSDASRPALAAVERDLFLPLVYLQICLLLRSPFFR*
Coding >Hirsu2|5058
ATGTCCCGACTTTTATCCTCGGCCCTGTCACTGCGTCGGGACCCTCGGATCCTGAAATTCCCTCCGTACATGTCC
CTGCTTTGCGTAACAATTGGTGTCATCTGGCTGCTTTTGCTACCCTTGGATGACTACTCTCGACGGACGTATATC
TCGGAGAATGCTTTATTGCCTGGCCAAGTACATACCTACTTCGGAGGTAGCGAGCAGAACGTCTTTCGAGCGTAT
CGTCAGGAGATAGACAGCCTGGCGGGACTGAGCAATCACGAGATTAATAACCAACTCGAGGCCATCCTCCAGAGC
GTCGGGATCAAGTCCGGACGACAAAACTATACCTATTACTCAGCTGGGGCGGTGTTCAACGGCGAAAACGTGTAT
GGAATACTGCAAGCTCCGCGCGGTGATGCCACTGAGGCCATTGTTGTCGTCGCGGCTTGGCGGAGCATCGACGGG
GAGCCGAATCATAACGGCGTGGCTTTGGCCTTGACTCTAGCTCGCTATTTCAAGCGCTGGTCTCTGTGGTCCAAG
GACATCATCCTAGTGGTACCACCGGATAGCAGGACTGGCACGCAGGCTTGGGTAGATGCATACCATGATGCCCAC
GATCCGATCACAGTTGCTTCGCTACCCCTCAAGTCCGGCGCTCTGCAAGGCGCCGTTGCTATCGACTACCCATTT
GAGCAGTCTTTTGATGGTATTCACATTATCTATGACGGAACAAATGGGCAACTTCCCAATCTGGACCTCATCAAC
TCCATCGTTAACATCGCTGGTGGTCAGATGGGCATACAGACTGCGATTCAGGATATGAAGCACCATACCGGCAGC
TACTCCGACCGGCTGAAGACAATGTTGCGGGGCATGCTGAAGCAAGGACTTGGGAACTCGCCGGGTCCCCACAGC
AGCTTTATTCCATATCACGTCGATTCTGTGACGCTGCAGCCGTTCGGGGAGGGCTGGCATGATGAGATGGCCATG
GGCAGAGTAATTGAAGGGACTTTTAGGAGCCTGAACAATCTGCTGGAACATTTGCACCAGAGCTTCTTCTTTTAT
CTCTTGATGCAGAGGGACCGGTTCGTCAGTATCGGCACTTACCTACCAAGCGCCATGCTTCTGTCTGCCAATTTC
ACCATCATGGCCATCTTCTTGTGGGTCAAAAGCGGACAGCCTTCGCCAAAGAAACCTGTGGGAAGCGACGCCTCG
CGACCGGCGCTTGCAGCTGTGGAACGAGATCTGTTTCTACCACTTGTCTACCTGCAAATATGCTTGCTCCTGCGT
TCACCATTTTTTCGCTGA
Transcript >Hirsu2|5058
ATGTCCCGACTTTTATCCTCGGCCCTGTCACTGCGTCGGGACCCTCGGATCCTGAAATTCCCTCCGTACATGTCC
CTGCTTTGCGTAACAATTGGTGTCATCTGGCTGCTTTTGCTACCCTTGGATGACTACTCTCGACGGACGTATATC
TCGGAGAATGCTTTATTGCCTGGCCAAGTACATACCTACTTCGGAGGTAGCGAGCAGAACGTCTTTCGAGCGTAT
CGTCAGGAGATAGACAGCCTGGCGGGACTGAGCAATCACGAGATTAATAACCAACTCGAGGCCATCCTCCAGAGC
GTCGGGATCAAGTCCGGACGACAAAACTATACCTATTACTCAGCTGGGGCGGTGTTCAACGGCGAAAACGTGTAT
GGAATACTGCAAGCTCCGCGCGGTGATGCCACTGAGGCCATTGTTGTCGTCGCGGCTTGGCGGAGCATCGACGGG
GAGCCGAATCATAACGGCGTGGCTTTGGCCTTGACTCTAGCTCGCTATTTCAAGCGCTGGTCTCTGTGGTCCAAG
GACATCATCCTAGTGGTACCACCGGATAGCAGGACTGGCACGCAGGCTTGGGTAGATGCATACCATGATGCCCAC
GATCCGATCACAGTTGCTTCGCTACCCCTCAAGTCCGGCGCTCTGCAAGGCGCCGTTGCTATCGACTACCCATTT
GAGCAGTCTTTTGATGGTATTCACATTATCTATGACGGAACAAATGGGCAACTTCCCAATCTGGACCTCATCAAC
TCCATCGTTAACATCGCTGGTGGTCAGATGGGCATACAGACTGCGATTCAGGATATGAAGCACCATACCGGCAGC
TACTCCGACCGGCTGAAGACAATGTTGCGGGGCATGCTGAAGCAAGGACTTGGGAACTCGCCGGGTCCCCACAGC
AGCTTTATTCCATATCACGTCGATTCTGTGACGCTGCAGCCGTTCGGGGAGGGCTGGCATGATGAGATGGCCATG
GGCAGAGTAATTGAAGGGACTTTTAGGAGCCTGAACAATCTGCTGGAACATTTGCACCAGAGCTTCTTCTTTTAT
CTCTTGATGCAGAGGGACCGGTTCGTCAGTATCGGCACTTACCTACCAAGCGCCATGCTTCTGTCTGCCAATTTC
ACCATCATGGCCATCTTCTTGTGGGTCAAAAGCGGACAGCCTTCGCCAAAGAAACCTGTGGGAAGCGACGCCTCG
CGACCGGCGCTTGCAGCTGTGGAACGAGATCTGTTTCTACCACTTGTCTACCTGCAAATATGCTTGCTCCTGCGT
TCACCATTTTTTCGCTGA
Gene >Hirsu2|5058
ATGTCCCGACTTTTATGTGAGAGGATGGAACCTATTTCAGTCATCGTCTGAACCGTTTATCGCCCCTTCAGATCG
CTACGCTAACTCGTTCATGTGTTCAGCCTCGGCCCTGTCACTGCGTCGGGACCCTCGGATCCTGAAATTCCCTCC
GTACATGTCCCTGCTTTGCGTAACAATTGGTGTCATCTGGCTGCTTTTGCTACCCTTGGATGACTACTCTCGACG
GACGTATATCTCGGAGAATGCTTTATTGCCTGGCCAAGTACATACCTACTTCGGAGGTAGCGAGCAGAACGTCTT
TCGAGCGTATCGTCAGGAGATAGACAGCCTGGCGGGACTGAGCAATCACGAGCAAGTCTAAATTAATCGACAATC
TAAATGCAGTCCAGGAGATATTGACAACGAAAACACAGGATTAATAACCAACTCGAGGCCATCCTCCAGAGCGTC
GGGATCAAGTCCGGACGACAAAACTATACCTATTACTCAGCTGGGGCGGTGTTCAACGGCGAAAACGTGTATGGA
ATACTGCAAGCTCCGCGCGGTGATGCCACTGAGGCCATTGTTGTCGTCGCGGCTTGGCGGAGCATCGACGGGGAG
CCGAATCATAACGGCGTGGCTTTGGCCTTGACTCTAGCTCGCTATTTCAAGCGTAAGTCGCCGCCGGCCGGCCTG
TGTCGCACGTACCCTGTCACAGTGGCTACGGGACTGATCGCTTGGGCAGGCTGGTCTCTGTGGTCCAAGGACATC
ATCCTAGTGGTACCACCGGATAGCAGGACTGGCACGCAGGCTTGGGTAGATGCATACCATGATGCCCACGATCCG
ATCACAGTTGCTTCGCTACCCCTCAAGTCCGGCGCTCTGCAAGGCGCCGTTGCTATCGACTACCCATTTGAGCAG
TCTTTTGATGGTATTCACATTATCTATGACGGAACAAATGGGCAACTTCCCAATCTGGACCTCATCAACTCCATC
GTTAACATCGCTGGTGGTCAGATGGGCATACAGACTGCGATTCAGGATATGAAGCACCATACCGGCAGCTACTCC
GACCGGCTGAAGACAATGTTGCGGGGCATGCTGAAGCAAGGACTTGGGAACTCGCCGGGTCCCCACAGCAGCTTT
ATTCCATATCACGTCGATTCTGTGACGCTGCAGCCGTTCGGGGAGGGCTGGCATGATGAGATGGCCATGGGCAGA
GTAATTGAAGGGACTTTTAGGAGCCTGAACAATCTGCTGGAACATTTGCACCAGAGCTTCTTCTTTTATCTCTTG
ATGCAGAGGGACCGGTTCGTCAGTATCGGCACTTACCTACCAAGCGCCATGCTTCTGTCTGCCAATTTCACCATC
ATGGCCATCTTCTTGTGGGTCAAAAGCGGACAGCCTTCGCCAAAGAAACCTGTGGGAAGTCAGGGCCCCGCTGCC
GAATCAGAGACCGGCGTACCTCTGCTGACAGCAGCAGGCGACGCCTCGCGACCGGCGCTTGCAGCTGTGGAACGA
GATCTGTTTCTACCACTTGGTGTTGTGACAGCATGCCAGGCAGCTTCAATGATACCGCTCTTTGTCTTCAACAGT
CTACCTGCAAATGTCAGTCGCGCTCATCCTTTCCCGCCGCAGGAATCTCATGAGCCCACAGGCTGCTCACGACTT
CTCCATAGATGCTTGCTCCTGCGTTCACCATTTTTTCGCTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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