© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4940 |
| Gene name | |
| Location | Contig_2486:773..2418 |
| Strand | + |
| Gene length (bp) | 1645 |
| Transcript length (bp) | 1116 |
| Coding sequence length (bp) | 1116 |
| Protein length (aa) | 372 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.179 | 0.1314 | 0.8648 | 0.2498 | 0.1079 | 0.0517 | 0.429 | 0.3362 | 0.3979 | 0.0048 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 26 | 0.999735 |
| Orthofinder run ID | 4 |
| Orthogroup | 152 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4940 MLRGCWAALVVCSVLCLFPWPSSCRAGVILLEKRGNALGSSGGGLPGGSQGESGRSGGFTPPKGGVPLPGLAKSA SGPQDLGQNTHTYEEIGHGKKDTSVKSKIKTLRGVRFGSRAGAIAAFTILSPYAHDVLDALKKWDNPIGWAVKGF DDAMARLQESIGGQQVPEIYGNELKLKMICWFRGEQRFKNDVDYACDRLREKQRIEAAREQEPAKEQERVQLLNQ LLDSCDKGQDHPPDSGGIESELDKGCAELYTKANESAGAAPKSPNRAAYEGLPTNIYAPDYWCVVEKDDKTYDCA WSYCTGWTEGADPGAGFNYYTSTKHHTVTQLNDPARDGQDPPRPGDACYNVYTGAGCAWPNWSQLVCKKRA* |
| Coding | >Hirsu2|4940 ATGCTACGTGGGTGCTGGGCCGCTCTAGTCGTTTGCTCCGTCCTCTGCCTATTTCCATGGCCCTCTAGCTGCCGG GCGGGCGTGATTCTGCTGGAGAAGAGGGGCAACGCGCTTGGCAGCAGTGGCGGAGGCCTCCCAGGAGGCTCCCAA GGCGAAAGCGGTCGTTCCGGTGGCTTTACTCCTCCTAAAGGCGGCGTCCCTCTTCCCGGCCTCGCGAAGTCGGCT TCCGGCCCTCAAGACCTAGGCCAAAACACCCACACTTACGAGGAGATAGGGCATGGAAAGAAAGACACTTCGGTA AAAAGCAAGATCAAGACACTACGAGGCGTTCGATTCGGAAGCCGGGCTGGTGCGATTGCAGCCTTTACTATTTTG TCCCCCTATGCCCACGATGTGCTGGATGCGCTGAAAAAGTGGGACAACCCCATCGGATGGGCGGTAAAGGGTTTC GACGACGCCATGGCAAGACTGCAGGAATCAATCGGAGGACAGCAAGTTCCCGAAATCTACGGGAACGAACTGAAA TTGAAAATGATCTGCTGGTTCAGGGGGGAGCAGCGGTTCAAAAACGACGTCGACTATGCATGCGATAGGTTGAGG GAGAAACAGAGGATCGAAGCGGCACGCGAGCAGGAGCCGGCAAAGGAGCAGGAAAGGGTCCAGCTGCTCAATCAG CTTCTCGACAGCTGCGACAAAGGCCAGGATCACCCTCCGGACAGTGGAGGCATCGAGAGCGAGCTGGATAAAGGG TGCGCCGAGCTTTACACTAAGGCAAATGAATCTGCTGGTGCGGCGCCGAAGAGCCCGAACCGTGCGGCTTACGAA GGCCTCCCTACTAACATCTACGCACCGGATTACTGGTGTGTCGTTGAAAAGGACGATAAGACATACGACTGCGCC TGGAGCTACTGCACGGGATGGACAGAAGGAGCCGATCCGGGAGCCGGCTTTAATTACTATACTAGCACTAAGCAC CATACCGTCACTCAGCTCAACGACCCTGCCCGGGATGGCCAAGATCCCCCCAGGCCCGGGGACGCATGCTATAAT GTCTATACGGGTGCCGGCTGCGCCTGGCCGAACTGGAGCCAATTAGTCTGCAAAAAGAGGGCTTAG |
| Transcript | >Hirsu2|4940 ATGCTACGTGGGTGCTGGGCCGCTCTAGTCGTTTGCTCCGTCCTCTGCCTATTTCCATGGCCCTCTAGCTGCCGG GCGGGCGTGATTCTGCTGGAGAAGAGGGGCAACGCGCTTGGCAGCAGTGGCGGAGGCCTCCCAGGAGGCTCCCAA GGCGAAAGCGGTCGTTCCGGTGGCTTTACTCCTCCTAAAGGCGGCGTCCCTCTTCCCGGCCTCGCGAAGTCGGCT TCCGGCCCTCAAGACCTAGGCCAAAACACCCACACTTACGAGGAGATAGGGCATGGAAAGAAAGACACTTCGGTA AAAAGCAAGATCAAGACACTACGAGGCGTTCGATTCGGAAGCCGGGCTGGTGCGATTGCAGCCTTTACTATTTTG TCCCCCTATGCCCACGATGTGCTGGATGCGCTGAAAAAGTGGGACAACCCCATCGGATGGGCGGTAAAGGGTTTC GACGACGCCATGGCAAGACTGCAGGAATCAATCGGAGGACAGCAAGTTCCCGAAATCTACGGGAACGAACTGAAA TTGAAAATGATCTGCTGGTTCAGGGGGGAGCAGCGGTTCAAAAACGACGTCGACTATGCATGCGATAGGTTGAGG GAGAAACAGAGGATCGAAGCGGCACGCGAGCAGGAGCCGGCAAAGGAGCAGGAAAGGGTCCAGCTGCTCAATCAG CTTCTCGACAGCTGCGACAAAGGCCAGGATCACCCTCCGGACAGTGGAGGCATCGAGAGCGAGCTGGATAAAGGG TGCGCCGAGCTTTACACTAAGGCAAATGAATCTGCTGGTGCGGCGCCGAAGAGCCCGAACCGTGCGGCTTACGAA GGCCTCCCTACTAACATCTACGCACCGGATTACTGGTGTGTCGTTGAAAAGGACGATAAGACATACGACTGCGCC TGGAGCTACTGCACGGGATGGACAGAAGGAGCCGATCCGGGAGCCGGCTTTAATTACTATACTAGCACTAAGCAC CATACCGTCACTCAGCTCAACGACCCTGCCCGGGATGGCCAAGATCCCCCCAGGCCCGGGGACGCATGCTATAAT GTCTATACGGGTGCCGGCTGCGCCTGGCCGAACTGGAGCCAATTAGTCTGCAAAAAGAGGGCTTAG |
| Gene | >Hirsu2|4940 ATGCTACGTGGGTGCTGGGCCGCTCTAGTCGTTTGCTCCGTCCTCTGCCTATTTCCATGGCCCTCTAGCTGCCGG GCGGGCGTGATTCTGCTGGAGAAGAGGGGCAACGCGCTTGGCAGCAGTGGCGGAGGCCTCCCAGGAGGCTCCCAA GGCGAAAGCGGTCGTTCCGGTGGCTTTACTCCTCCTAAAGGCGGCGTCCCTCTTCCCGGCCTCGCGAAGTCGGCT TCCGGCCCTCAAGACCTAGGCCAAAACACCCACACTTACGAGGAGATAGGGCATGGAAAGAAAGACGTATCAAGG CCGAATAGCCTCTACGGAGAGATAAGACCAGAGAGCCACATTTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNGTACTAAAGAGGTGTCCAGGCCGAATAGCCTCTACGGAAAGACGAGACCAGAGAGCCA CATTTACGAGGAGATAGGGCCTAGTACTAAAGAGGTGTCCAGGCCGAATAGCCTCTACGGAAAGACGAGACCAGA GAGCCACATTTACGAGGAGATAGGGCCTAGTACAAGGACTTCTAAGCCCACGAAAACTGCAGTCACGAAGACTTC GGTAAAAAGCAAGATCAAGACACTACGAGGCGTTCGATTCGGAAGCCGGGCTGGTGCGATTGCAGCCTTTACTAT TTTGTCCCCCTATGCCCACGATGTGCTGGATGCGCTGAAAAAGTGGGACAACCCCATCGGATGGGCGGTAAAGGG TTTCGACGACGCCATGGCAAGACTGCAGGAATCAATCGGAGGACAGCAAGTTCCCGAAATCTACGGGAACGAACT GAAATTGAAAATGATCTGCTGGTTCAGGGGGGAGCAGCGGTTCAAAAACGACGTCGACTATGCATGCGATAGGTT GAGGGAGAAACAGAGGATCGAAGCGGCACGCGAGCAGGAGCCGGCAAAGGAGCAGGAAAGGGTCCAGCTGCTCAA TCAGCTTCTCGACAGCTGCGACAAAGGCCAGGATCACCCTCCGGACAGTGGAGGCATCGAGAGCGAGCTGGATAA AGGGTGCGCCGAGCTTTACACTAAGGCAAATGAATCTGCTGGTGCGGCGCCGAAGAGCCCGAACCGTGCGGCTTA CGAAGGCCTCCCTACTAACATCTACGCACCGGATTACTGGTGTGTCGTTGAAAAGGACGATAAGACATACGACTG CGCCTGGAGCTACTGCACGGGATGGACAGAAGGAGCCGATCCGGGAGCCGGCTTTAATTACTATACTAGCACTAA GCACCATACCGTCACTCAGCTCAACGACCCTGCCCGGGATGGCCAAGATCCCCCCAGGCCCGGGGACGCATGCTA TAATGTCTATACGGGTGCCGGCTGCGCCTGGCCGAACTGGAGCCAATTAGTCTGCAAAAAGAGGGCTTAG |