Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4939
Gene name
LocationContig_2485:474..2218
Strand-
Gene length (bp)1744
Transcript length (bp)1638
Coding sequence length (bp)1638
Protein length (aa) 546

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02854 MIF4G MIF4G domain 1.2E-18 184 386

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O13971|SGD1_SCHPO Suppressor of glycerol defect protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sgd1 PE=3 SV=1 159 543 6.0E-48
sp|Q06132|SGD1_YEAST Suppressor of glycerol defect protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGD1 PE=1 SV=1 20 540 3.0E-33
sp|Q3UFM5|NOM1_MOUSE Nucleolar MIF4G domain-containing protein 1 OS=Mus musculus GN=Nom1 PE=1 SV=2 31 543 1.0E-23
sp|Q5C9Z4|NOM1_HUMAN Nucleolar MIF4G domain-containing protein 1 OS=Homo sapiens GN=NOM1 PE=1 SV=1 141 543 9.0E-22
sp|Q9W020|NOM1_DROME Nucleolar MIF4G domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG9004 PE=2 SV=1 152 538 2.0E-21

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0003723 RNA binding Yes
GO:1901363 heterocyclic compound binding No
GO:0097159 organic cyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4939
MGFSDEPLKRLSAPRDGRILTKTIREQLARDDKTIAVFERKLGIKKSQHSLPEPSKYDGLDELLAGLPSNRGGNQ
DDTLKRNRRFDDWVSSKRRKTLLKSCLQRNAPHDEGEEIAGERRSGSDKADRRATGSDCEGERSTERASRPQENL
YVTAKVPAVCAKYIPPPRKTMSTSGEEVNTRLRKQVQGQINRLADGNLLLVLKSIDDIYQQSARGLVTDILIDAI
MAQVNKSQSLPDQFFVVIGGFCAAAYKLIGNRFGSHLVCRVVKDFAHEYDRATSEPYDQSRGRKEPSNIIAFLTQ
LYVFEVVSCKILFDYMERLLNVLSETNVELLLRLCRMAGKLLRKDDPQALNHVAKVLNESVSKLGHSHVSVRTKL
MIEIIEEVKECKWNSKGYESSLFSENVLRIRKTLGNLRSQSRRLDGLAAMGLGLDDIESTDLCGKRWLMEASTPA
DCGNPKWVKVRVPGTRGRDHGATDVENLDLVLPDYPQKARAQGLGTSTQIAIFTALMSANHHEQGYLQFTNLKLK
RDEQTEIAHVLVHWLAQEVE*
Coding >Hirsu2|4939
ATGGGATTTTCGGACGAGCCACTGAAACGTCTCAGCGCACCCAGAGATGGCCGCATTCTCACAAAAACAATTCGT
GAACAGCTTGCCCGAGACGACAAAACAATAGCAGTGTTCGAGAGGAAGCTCGGTATTAAAAAAAGTCAACATTCT
CTGCCGGAGCCATCCAAATATGACGGACTTGATGAGCTCCTCGCTGGATTACCAAGCAACCGCGGCGGCAATCAG
GACGACACTTTGAAACGAAACCGCAGGTTTGATGATTGGGTATCATCAAAAAGGCGGAAAACTCTCCTGAAATCT
TGCCTGCAGCGCAACGCTCCTCATGATGAAGGAGAAGAAATAGCCGGCGAGAGGCGGAGCGGCTCAGATAAAGCT
GATAGACGTGCAACGGGATCCGACTGCGAGGGCGAGCGTTCAACTGAAAGGGCATCACGACCTCAAGAAAACTTA
TACGTCACGGCTAAGGTGCCTGCTGTGTGCGCAAAATACATACCGCCGCCTCGAAAAACTATGTCAACATCCGGC
GAGGAGGTCAATACTCGTTTGCGGAAGCAGGTTCAAGGCCAAATAAACCGTCTTGCTGATGGCAATCTTTTGCTC
GTACTCAAATCAATTGACGACATTTATCAGCAGAGCGCCCGTGGCCTCGTTACTGACATTCTCATAGATGCGATC
ATGGCTCAAGTTAACAAATCCCAAAGTCTGCCAGACCAATTCTTCGTCGTTATCGGAGGCTTCTGCGCTGCTGCC
TATAAACTTATTGGAAACAGATTCGGGTCTCATCTCGTCTGTCGAGTAGTCAAAGACTTTGCCCACGAGTATGAC
AGGGCTACTTCGGAACCATACGACCAATCACGCGGAAGAAAGGAGCCGAGTAACATCATCGCCTTCCTTACACAA
CTCTACGTATTCGAGGTCGTCAGCTGCAAGATTCTCTTCGACTACATGGAGAGGCTACTCAATGTGCTCTCGGAA
ACTAATGTCGAGCTCCTACTTCGACTGTGTCGTATGGCTGGCAAATTGCTACGAAAAGATGATCCGCAAGCTTTG
AATCACGTTGCAAAAGTCTTGAACGAATCTGTGTCGAAACTGGGACATTCTCACGTGTCTGTGCGAACCAAGTTG
ATGATCGAAATCATCGAGGAGGTCAAAGAATGCAAATGGAATTCTAAGGGGTATGAATCTTCACTCTTCTCGGAA
AATGTACTTCGTATCAGAAAGACGTTGGGCAATCTGAGATCCCAGTCACGAAGACTAGATGGTCTGGCAGCGATG
GGGCTAGGTCTAGATGACATCGAGAGCACTGATTTGTGTGGGAAACGGTGGCTTATGGAAGCCAGCACGCCAGCC
GATTGCGGGAATCCCAAATGGGTGAAGGTAAGGGTGCCGGGCACACGTGGTCGTGACCACGGCGCGACAGACGTG
GAGAACCTGGATTTGGTGTTACCCGACTATCCACAAAAGGCGCGTGCGCAGGGTCTTGGGACATCAACACAGATT
GCGATTTTCACGGCGCTGATGTCGGCCAACCACCACGAGCAAGGCTACCTACAATTTACGAACCTAAAGCTCAAG
AGGGACGAGCAAACCGAGATCGCTCATGTGCTCGTGCACTGGCTTGCACAAGAAGTCGAATAA
Transcript >Hirsu2|4939
ATGGGATTTTCGGACGAGCCACTGAAACGTCTCAGCGCACCCAGAGATGGCCGCATTCTCACAAAAACAATTCGT
GAACAGCTTGCCCGAGACGACAAAACAATAGCAGTGTTCGAGAGGAAGCTCGGTATTAAAAAAAGTCAACATTCT
CTGCCGGAGCCATCCAAATATGACGGACTTGATGAGCTCCTCGCTGGATTACCAAGCAACCGCGGCGGCAATCAG
GACGACACTTTGAAACGAAACCGCAGGTTTGATGATTGGGTATCATCAAAAAGGCGGAAAACTCTCCTGAAATCT
TGCCTGCAGCGCAACGCTCCTCATGATGAAGGAGAAGAAATAGCCGGCGAGAGGCGGAGCGGCTCAGATAAAGCT
GATAGACGTGCAACGGGATCCGACTGCGAGGGCGAGCGTTCAACTGAAAGGGCATCACGACCTCAAGAAAACTTA
TACGTCACGGCTAAGGTGCCTGCTGTGTGCGCAAAATACATACCGCCGCCTCGAAAAACTATGTCAACATCCGGC
GAGGAGGTCAATACTCGTTTGCGGAAGCAGGTTCAAGGCCAAATAAACCGTCTTGCTGATGGCAATCTTTTGCTC
GTACTCAAATCAATTGACGACATTTATCAGCAGAGCGCCCGTGGCCTCGTTACTGACATTCTCATAGATGCGATC
ATGGCTCAAGTTAACAAATCCCAAAGTCTGCCAGACCAATTCTTCGTCGTTATCGGAGGCTTCTGCGCTGCTGCC
TATAAACTTATTGGAAACAGATTCGGGTCTCATCTCGTCTGTCGAGTAGTCAAAGACTTTGCCCACGAGTATGAC
AGGGCTACTTCGGAACCATACGACCAATCACGCGGAAGAAAGGAGCCGAGTAACATCATCGCCTTCCTTACACAA
CTCTACGTATTCGAGGTCGTCAGCTGCAAGATTCTCTTCGACTACATGGAGAGGCTACTCAATGTGCTCTCGGAA
ACTAATGTCGAGCTCCTACTTCGACTGTGTCGTATGGCTGGCAAATTGCTACGAAAAGATGATCCGCAAGCTTTG
AATCACGTTGCAAAAGTCTTGAACGAATCTGTGTCGAAACTGGGACATTCTCACGTGTCTGTGCGAACCAAGTTG
ATGATCGAAATCATCGAGGAGGTCAAAGAATGCAAATGGAATTCTAAGGGGTATGAATCTTCACTCTTCTCGGAA
AATGTACTTCGTATCAGAAAGACGTTGGGCAATCTGAGATCCCAGTCACGAAGACTAGATGGTCTGGCAGCGATG
GGGCTAGGTCTAGATGACATCGAGAGCACTGATTTGTGTGGGAAACGGTGGCTTATGGAAGCCAGCACGCCAGCC
GATTGCGGGAATCCCAAATGGGTGAAGGTAAGGGTGCCGGGCACACGTGGTCGTGACCACGGCGCGACAGACGTG
GAGAACCTGGATTTGGTGTTACCCGACTATCCACAAAAGGCGCGTGCGCAGGGTCTTGGGACATCAACACAGATT
GCGATTTTCACGGCGCTGATGTCGGCCAACCACCACGAGCAAGGCTACCTACAATTTACGAACCTAAAGCTCAAG
AGGGACGAGCAAACCGAGATCGCTCATGTGCTCGTGCACTGGCTTGCACAAGAAGTCGAATAA
Gene >Hirsu2|4939
ATGGGATTTTCGGACGAGCCACTGAAACGTCTCAGCGCACCCAGAGATGGCCGCATTCTCACAAAAACAATTCGT
GAACAGCTTGCCCGAGACGACAAAACAATAGCAGTGTTCGAGAGGAAGCTCGGTATTAAAAAAAGTCAACATTCT
CTGCCGGAGCCATCCAAATATGACGGACTTGATGAGCTCCTCGCTGGATTACCAAGCAACCGCGGCGGCAATCAG
GACGACACTTTGAAACGAAACCGCAGGTTTGATGATTGGGTATCATCAAAAAGGCGGAAAACTCTCCTGAAATCT
TGCCTGCAGCGCAACGCTCCTCATGATGAAGGAGAAGAAATAGCCGGCGAGAGGCGGAGCGGCTCAGATAAAGCT
GATAGACGTGCAACGGGTGAAGGACAGCGCAAGCTCTTCCCGGAGGATAGTGACTCTGACTCATCCAAAGGATCC
GACTGCGAGGGCGAGCGTTCAACTGAAAGGGCATCACGACCTCAAGAAAACTTATACGTCACGGCTAAGGTGCCT
GCTGTGTGCGCAAAATACATACCGCCGCCTCGAAAAACTATGTCAACATCCGGCGAGGAGGTCAATACTCGTTTG
CGGAAGCAGGTTCAAGGCCAAATAAACCGTCTTGCTGATGGCAATCTTTTGCTCGTACTCAAATCAATTGACGAC
ATTTATCAGCAGAGCGCCCGTGGCCTCGTTACTGACATTCTCATAGATGCGATCATGGCTCAAGTTAACAAATCC
CAAAGTCTGCCAGACCAATTCTTCGTCGTTATCGGAGGCTTCTGCGCTGCTGCCTATAAACTTATTGGAAACAGA
TTCGGGTCTCATCTCGTCTGTCGAGTAGTCAAAGACTTTGCCCACGAGTATGACAGGGCTACTTCGGAACCATAC
GACCAATCACGCGGAAGAAAGGAGCCGAGTAACATCATCGCCTTCCTTACACAACTCTACGTATTCGAGGTCGTC
AGCTGCAAGATTCTCTTCGACTACATGGAGAGGCTACTCAATGTGCTCTCGGAAACTAATGTCGAGCTCCTACTT
CGACTGTGTCGTATGGCTGGCAAATTGCTACGAAAAGATGATCCGCAAGCTTTGAATCACGTTGCAAAAGTCTTG
AACGAATCTGTGTCGAAACTGGGACATTCTCACGTGTCTGTGCGAACCAAGTTGATGATCGAAATCATCGAGGAG
GTCAAAGAATGCAAATGGAATTCTAAGGGGTATGAATCTTCACTCTTCTCGGAAAATGTACTTCGTATCAGAAAG
ACGTTGGGCAATCTGAGATCCCAGTCACGAAGACTAGATGGTCTGGCAGCGATGGGGCTAGGTCTAGATGACATC
GAGAGCACTGATTTGTGTGGGAAACGGTGGCTTATGGAAGCCAGCACGCCAGCCGATTGCGGGAATCCCAAATGG
GTGAAGGTAAGGGTGCCGGGCACACGTGGTCGTGACCACGGCGCGACAGACGTGGAGAACCTGGATTTGGTGTTA
CCCGACTATCCACAAAAGGCGCGTGCGCAGGGTCTTGGGACATCAACACAGATTGCGATTTTCACGGCGCTGATG
TCGGCCAACCACCACGAGCAAGGCTACCTACAATTTACGAACCTAAAGCTCAAGAGGGACGAGCAAACCGAGATC
GCTCATGTGCTCGTGCAGTGCGTGGGAAGTGAGAAACAGTACAACCATTACTACGGACTGGTGGCGAAGCTGGCT
TGCACAAGAAGTCGAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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