Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|4939
Gene name
Location	Contig_2485:474..2218
Strand	-
Gene length (bp)	1744
Transcript length (bp)	1638
Coding sequence length (bp)	1638
Protein length (aa)	546

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF02854	MIF4G	MIF4G domain	1.2E-18	184	386

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O13971\|SGD1_SCHPO	Suppressor of glycerol defect protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sgd1 PE=3 SV=1	159	543	6.0E-48
sp\|Q06132\|SGD1_YEAST	Suppressor of glycerol defect protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGD1 PE=1 SV=1	20	540	3.0E-33
sp\|Q3UFM5\|NOM1_MOUSE	Nucleolar MIF4G domain-containing protein 1 OS=Mus musculus GN=Nom1 PE=1 SV=2	31	543	1.0E-23
sp\|Q5C9Z4\|NOM1_HUMAN	Nucleolar MIF4G domain-containing protein 1 OS=Homo sapiens GN=NOM1 PE=1 SV=1	141	543	9.0E-22
sp\|Q9W020\|NOM1_DROME	Nucleolar MIF4G domain-containing protein 1 homolog OS=Drosophila melanogaster GN=CG9004 PE=2 SV=1	152	538	2.0E-21

GO

GO Term	Description	Terminal node
GO:0005515	protein binding	Yes
GO:0003723	RNA binding	Yes
GO:1901363	heterocyclic compound binding	No
GO:0097159	organic cyclic compound binding	No
GO:0003676	nucleic acid binding	No
GO:0003674	molecular_function	No
GO:0005488	binding	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 11	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|4939 MGFSDEPLKRLSAPRDGRILTKTIREQLARDDKTIAVFERKLGIKKSQHSLPEPSKYDGLDELLAGLPSNRGGNQ DDTLKRNRRFDDWVSSKRRKTLLKSCLQRNAPHDEGEEIAGERRSGSDKADRRATGSDCEGERSTERASRPQENL YVTAKVPAVCAKYIPPPRKTMSTSGEEVNTRLRKQVQGQINRLADGNLLLVLKSIDDIYQQSARGLVTDILIDAI MAQVNKSQSLPDQFFVVIGGFCAAAYKLIGNRFGSHLVCRVVKDFAHEYDRATSEPYDQSRGRKEPSNIIAFLTQ LYVFEVVSCKILFDYMERLLNVLSETNVELLLRLCRMAGKLLRKDDPQALNHVAKVLNESVSKLGHSHVSVRTKL MIEIIEEVKECKWNSKGYESSLFSENVLRIRKTLGNLRSQSRRLDGLAAMGLGLDDIESTDLCGKRWLMEASTPA DCGNPKWVKVRVPGTRGRDHGATDVENLDLVLPDYPQKARAQGLGTSTQIAIFTALMSANHHEQGYLQFTNLKLK RDEQTEIAHVLVHWLAQEVE*
Coding	>Hirsu2\|4939 ATGGGATTTTCGGACGAGCCACTGAAACGTCTCAGCGCACCCAGAGATGGCCGCATTCTCACAAAAACAATTCGT GAACAGCTTGCCCGAGACGACAAAACAATAGCAGTGTTCGAGAGGAAGCTCGGTATTAAAAAAAGTCAACATTCT CTGCCGGAGCCATCCAAATATGACGGACTTGATGAGCTCCTCGCTGGATTACCAAGCAACCGCGGCGGCAATCAG GACGACACTTTGAAACGAAACCGCAGGTTTGATGATTGGGTATCATCAAAAAGGCGGAAAACTCTCCTGAAATCT TGCCTGCAGCGCAACGCTCCTCATGATGAAGGAGAAGAAATAGCCGGCGAGAGGCGGAGCGGCTCAGATAAAGCT GATAGACGTGCAACGGGATCCGACTGCGAGGGCGAGCGTTCAACTGAAAGGGCATCACGACCTCAAGAAAACTTA TACGTCACGGCTAAGGTGCCTGCTGTGTGCGCAAAATACATACCGCCGCCTCGAAAAACTATGTCAACATCCGGC GAGGAGGTCAATACTCGTTTGCGGAAGCAGGTTCAAGGCCAAATAAACCGTCTTGCTGATGGCAATCTTTTGCTC GTACTCAAATCAATTGACGACATTTATCAGCAGAGCGCCCGTGGCCTCGTTACTGACATTCTCATAGATGCGATC ATGGCTCAAGTTAACAAATCCCAAAGTCTGCCAGACCAATTCTTCGTCGTTATCGGAGGCTTCTGCGCTGCTGCC TATAAACTTATTGGAAACAGATTCGGGTCTCATCTCGTCTGTCGAGTAGTCAAAGACTTTGCCCACGAGTATGAC AGGGCTACTTCGGAACCATACGACCAATCACGCGGAAGAAAGGAGCCGAGTAACATCATCGCCTTCCTTACACAA CTCTACGTATTCGAGGTCGTCAGCTGCAAGATTCTCTTCGACTACATGGAGAGGCTACTCAATGTGCTCTCGGAA ACTAATGTCGAGCTCCTACTTCGACTGTGTCGTATGGCTGGCAAATTGCTACGAAAAGATGATCCGCAAGCTTTG AATCACGTTGCAAAAGTCTTGAACGAATCTGTGTCGAAACTGGGACATTCTCACGTGTCTGTGCGAACCAAGTTG ATGATCGAAATCATCGAGGAGGTCAAAGAATGCAAATGGAATTCTAAGGGGTATGAATCTTCACTCTTCTCGGAA AATGTACTTCGTATCAGAAAGACGTTGGGCAATCTGAGATCCCAGTCACGAAGACTAGATGGTCTGGCAGCGATG GGGCTAGGTCTAGATGACATCGAGAGCACTGATTTGTGTGGGAAACGGTGGCTTATGGAAGCCAGCACGCCAGCC GATTGCGGGAATCCCAAATGGGTGAAGGTAAGGGTGCCGGGCACACGTGGTCGTGACCACGGCGCGACAGACGTG GAGAACCTGGATTTGGTGTTACCCGACTATCCACAAAAGGCGCGTGCGCAGGGTCTTGGGACATCAACACAGATT GCGATTTTCACGGCGCTGATGTCGGCCAACCACCACGAGCAAGGCTACCTACAATTTACGAACCTAAAGCTCAAG AGGGACGAGCAAACCGAGATCGCTCATGTGCTCGTGCACTGGCTTGCACAAGAAGTCGAATAA
Transcript	>Hirsu2\|4939 ATGGGATTTTCGGACGAGCCACTGAAACGTCTCAGCGCACCCAGAGATGGCCGCATTCTCACAAAAACAATTCGT GAACAGCTTGCCCGAGACGACAAAACAATAGCAGTGTTCGAGAGGAAGCTCGGTATTAAAAAAAGTCAACATTCT CTGCCGGAGCCATCCAAATATGACGGACTTGATGAGCTCCTCGCTGGATTACCAAGCAACCGCGGCGGCAATCAG GACGACACTTTGAAACGAAACCGCAGGTTTGATGATTGGGTATCATCAAAAAGGCGGAAAACTCTCCTGAAATCT TGCCTGCAGCGCAACGCTCCTCATGATGAAGGAGAAGAAATAGCCGGCGAGAGGCGGAGCGGCTCAGATAAAGCT GATAGACGTGCAACGGGATCCGACTGCGAGGGCGAGCGTTCAACTGAAAGGGCATCACGACCTCAAGAAAACTTA TACGTCACGGCTAAGGTGCCTGCTGTGTGCGCAAAATACATACCGCCGCCTCGAAAAACTATGTCAACATCCGGC GAGGAGGTCAATACTCGTTTGCGGAAGCAGGTTCAAGGCCAAATAAACCGTCTTGCTGATGGCAATCTTTTGCTC GTACTCAAATCAATTGACGACATTTATCAGCAGAGCGCCCGTGGCCTCGTTACTGACATTCTCATAGATGCGATC ATGGCTCAAGTTAACAAATCCCAAAGTCTGCCAGACCAATTCTTCGTCGTTATCGGAGGCTTCTGCGCTGCTGCC TATAAACTTATTGGAAACAGATTCGGGTCTCATCTCGTCTGTCGAGTAGTCAAAGACTTTGCCCACGAGTATGAC AGGGCTACTTCGGAACCATACGACCAATCACGCGGAAGAAAGGAGCCGAGTAACATCATCGCCTTCCTTACACAA CTCTACGTATTCGAGGTCGTCAGCTGCAAGATTCTCTTCGACTACATGGAGAGGCTACTCAATGTGCTCTCGGAA ACTAATGTCGAGCTCCTACTTCGACTGTGTCGTATGGCTGGCAAATTGCTACGAAAAGATGATCCGCAAGCTTTG AATCACGTTGCAAAAGTCTTGAACGAATCTGTGTCGAAACTGGGACATTCTCACGTGTCTGTGCGAACCAAGTTG ATGATCGAAATCATCGAGGAGGTCAAAGAATGCAAATGGAATTCTAAGGGGTATGAATCTTCACTCTTCTCGGAA AATGTACTTCGTATCAGAAAGACGTTGGGCAATCTGAGATCCCAGTCACGAAGACTAGATGGTCTGGCAGCGATG GGGCTAGGTCTAGATGACATCGAGAGCACTGATTTGTGTGGGAAACGGTGGCTTATGGAAGCCAGCACGCCAGCC GATTGCGGGAATCCCAAATGGGTGAAGGTAAGGGTGCCGGGCACACGTGGTCGTGACCACGGCGCGACAGACGTG GAGAACCTGGATTTGGTGTTACCCGACTATCCACAAAAGGCGCGTGCGCAGGGTCTTGGGACATCAACACAGATT GCGATTTTCACGGCGCTGATGTCGGCCAACCACCACGAGCAAGGCTACCTACAATTTACGAACCTAAAGCTCAAG AGGGACGAGCAAACCGAGATCGCTCATGTGCTCGTGCACTGGCTTGCACAAGAAGTCGAATAA
Gene	>Hirsu2\|4939 ATGGGATTTTCGGACGAGCCACTGAAACGTCTCAGCGCACCCAGAGATGGCCGCATTCTCACAAAAACAATTCGT GAACAGCTTGCCCGAGACGACAAAACAATAGCAGTGTTCGAGAGGAAGCTCGGTATTAAAAAAAGTCAACATTCT CTGCCGGAGCCATCCAAATATGACGGACTTGATGAGCTCCTCGCTGGATTACCAAGCAACCGCGGCGGCAATCAG GACGACACTTTGAAACGAAACCGCAGGTTTGATGATTGGGTATCATCAAAAAGGCGGAAAACTCTCCTGAAATCT TGCCTGCAGCGCAACGCTCCTCATGATGAAGGAGAAGAAATAGCCGGCGAGAGGCGGAGCGGCTCAGATAAAGCT GATAGACGTGCAACGGGTGAAGGACAGCGCAAGCTCTTCCCGGAGGATAGTGACTCTGACTCATCCAAAGGATCC GACTGCGAGGGCGAGCGTTCAACTGAAAGGGCATCACGACCTCAAGAAAACTTATACGTCACGGCTAAGGTGCCT GCTGTGTGCGCAAAATACATACCGCCGCCTCGAAAAACTATGTCAACATCCGGCGAGGAGGTCAATACTCGTTTG CGGAAGCAGGTTCAAGGCCAAATAAACCGTCTTGCTGATGGCAATCTTTTGCTCGTACTCAAATCAATTGACGAC ATTTATCAGCAGAGCGCCCGTGGCCTCGTTACTGACATTCTCATAGATGCGATCATGGCTCAAGTTAACAAATCC CAAAGTCTGCCAGACCAATTCTTCGTCGTTATCGGAGGCTTCTGCGCTGCTGCCTATAAACTTATTGGAAACAGA TTCGGGTCTCATCTCGTCTGTCGAGTAGTCAAAGACTTTGCCCACGAGTATGACAGGGCTACTTCGGAACCATAC GACCAATCACGCGGAAGAAAGGAGCCGAGTAACATCATCGCCTTCCTTACACAACTCTACGTATTCGAGGTCGTC AGCTGCAAGATTCTCTTCGACTACATGGAGAGGCTACTCAATGTGCTCTCGGAAACTAATGTCGAGCTCCTACTT CGACTGTGTCGTATGGCTGGCAAATTGCTACGAAAAGATGATCCGCAAGCTTTGAATCACGTTGCAAAAGTCTTG AACGAATCTGTGTCGAAACTGGGACATTCTCACGTGTCTGTGCGAACCAAGTTGATGATCGAAATCATCGAGGAG GTCAAAGAATGCAAATGGAATTCTAAGGGGTATGAATCTTCACTCTTCTCGGAAAATGTACTTCGTATCAGAAAG ACGTTGGGCAATCTGAGATCCCAGTCACGAAGACTAGATGGTCTGGCAGCGATGGGGCTAGGTCTAGATGACATC GAGAGCACTGATTTGTGTGGGAAACGGTGGCTTATGGAAGCCAGCACGCCAGCCGATTGCGGGAATCCCAAATGG GTGAAGGTAAGGGTGCCGGGCACACGTGGTCGTGACCACGGCGCGACAGACGTGGAGAACCTGGATTTGGTGTTA CCCGACTATCCACAAAAGGCGCGTGCGCAGGGTCTTGGGACATCAACACAGATTGCGATTTTCACGGCGCTGATG TCGGCCAACCACCACGAGCAAGGCTACCTACAATTTACGAACCTAAAGCTCAAGAGGGACGAGCAAACCGAGATC GCTCATGTGCTCGTGCAGTGCGTGGGAAGTGAGAAACAGTACAACCATTACTACGGACTGGTGGCGAAGCTGGCT TGCACAAGAAGTCGAATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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