© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4936 |
| Gene name | |
| Location | Contig_2483:49..859 |
| Strand | + |
| Gene length (bp) | 810 |
| Transcript length (bp) | 696 |
| Coding sequence length (bp) | 696 |
| Protein length (aa) | 232 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00320 | GATA | GATA zinc finger | 3.2E-16 | 180 | 214 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54TE3|GTAJ_DICDI | GATA zinc finger domain-containing protein 10 OS=Dictyostelium discoideum GN=gtaJ PE=3 SV=1 | 179 | 221 | 2.0E-12 |
| sp|Q59LY1|BRG1_CANAL | Biofilm regulator 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=BRG1 PE=1 SV=1 | 140 | 216 | 8.0E-12 |
| sp|B0G188|GTAP_DICDI | GATA zinc finger domain-containing protein 16 OS=Dictyostelium discoideum GN=gtaP PE=3 SV=1 | 180 | 222 | 1.0E-11 |
| sp|Q54TM6|GTAI_DICDI | GATA zinc finger domain-containing protein 9 OS=Dictyostelium discoideum GN=gtaI PE=3 SV=1 | 180 | 218 | 6.0E-11 |
| sp|Q75JZ0|GTAH_DICDI | GATA zinc finger domain-containing protein 8 OS=Dictyostelium discoideum GN=gtaH PE=3 SV=1 | 168 | 211 | 7.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54TE3|GTAJ_DICDI | GATA zinc finger domain-containing protein 10 OS=Dictyostelium discoideum GN=gtaJ PE=3 SV=1 | 179 | 221 | 2.0E-12 |
| sp|Q59LY1|BRG1_CANAL | Biofilm regulator 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=BRG1 PE=1 SV=1 | 140 | 216 | 8.0E-12 |
| sp|B0G188|GTAP_DICDI | GATA zinc finger domain-containing protein 16 OS=Dictyostelium discoideum GN=gtaP PE=3 SV=1 | 180 | 222 | 1.0E-11 |
| sp|Q54TM6|GTAI_DICDI | GATA zinc finger domain-containing protein 9 OS=Dictyostelium discoideum GN=gtaI PE=3 SV=1 | 180 | 218 | 6.0E-11 |
| sp|Q75JZ0|GTAH_DICDI | GATA zinc finger domain-containing protein 8 OS=Dictyostelium discoideum GN=gtaH PE=3 SV=1 | 168 | 211 | 7.0E-11 |
| sp|Q00858|CGPB_FUSSO | Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1 | 168 | 217 | 1.0E-10 |
| sp|Q07928|GAT3_YEAST | Protein GAT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAT3 PE=3 SV=1 | 117 | 212 | 2.0E-10 |
| sp|Q55EQ0|GTAF_DICDI | GATA zinc finger domain-containing protein 6 OS=Dictyostelium discoideum GN=gtaF PE=3 SV=1 | 168 | 217 | 4.0E-10 |
| sp|Q75JZ1|GTAC_DICDI | GATA zinc finger domain-containing protein 3 OS=Dictyostelium discoideum GN=gtaC PE=3 SV=1 | 180 | 229 | 1.0E-09 |
| sp|Q54HA4|GTAO_DICDI | GATA zinc finger domain-containing protein 15 (Fragment) OS=Dictyostelium discoideum GN=gtaO PE=3 SV=1 | 110 | 215 | 2.0E-09 |
| sp|Q54KX0|GTAN_DICDI | GATA zinc finger domain-containing protein 14 OS=Dictyostelium discoideum GN=gtaN PE=3 SV=1 | 180 | 215 | 2.0E-09 |
| sp|Q55GK0|GTAE_DICDI | GATA zinc finger domain-containing protein 5 OS=Dictyostelium discoideum GN=gtaE PE=3 SV=1 | 179 | 224 | 3.0E-09 |
| sp|Q55C49|GTAG_DICDI | GATA zinc finger domain-containing protein 7 OS=Dictyostelium discoideum GN=gtaG PE=3 SV=1 | 180 | 217 | 4.0E-09 |
| sp|P40209|GAT2_YEAST | Protein GAT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAT2 PE=3 SV=1 | 180 | 215 | 5.0E-09 |
| sp|Q5KSV0|GTAK_DICDI | GATA zinc finger domain-containing protein 11 OS=Dictyostelium discoideum GN=gtaK PE=2 SV=1 | 179 | 215 | 6.0E-09 |
| sp|Q54NM5|GTAL_DICDI | GATA zinc finger domain-containing protein 12 OS=Dictyostelium discoideum GN=gtaL PE=3 SV=1 | 129 | 209 | 1.0E-08 |
| sp|P78714|WC2_NEUCR | White collar 2 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-2 PE=1 SV=1 | 168 | 210 | 2.0E-08 |
| sp|Q9ZPX0|GAT20_ARATH | GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2 SV=2 | 177 | 223 | 2.0E-07 |
| sp|Q54FV1|GTAX_DICDI | GATA zinc finger domain-containing protein 24 OS=Dictyostelium discoideum GN=gtaX PE=3 SV=2 | 170 | 215 | 2.0E-07 |
| sp|Q54V37|GTAT_DICDI | GATA zinc finger domain-containing protein 20 OS=Dictyostelium discoideum GN=gtaT PE=3 SV=1 | 169 | 218 | 4.0E-07 |
| sp|Q01371|WC1_NEUCR | White collar 1 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=wc-1 PE=1 SV=2 | 180 | 211 | 4.0E-07 |
| sp|Q54V32|GTAB_DICDI | GATA zinc finger domain-containing protein 2 OS=Dictyostelium discoideum GN=comH PE=3 SV=1 | 170 | 215 | 1.0E-06 |
| sp|Q5Z4U5|GAT20_ORYSJ | GATA transcription factor 20 OS=Oryza sativa subsp. japonica GN=GATA20 PE=2 SV=1 | 172 | 218 | 3.0E-06 |
| sp|Q6QPM2|GAT19_ARATH | GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2 | 179 | 215 | 4.0E-06 |
| sp|Q9LT45|GAT29_ARATH | GATA transcription factor 29 OS=Arabidopsis thaliana GN=GATA29 PE=2 SV=1 | 182 | 216 | 4.0E-06 |
| sp|Q6Z433|GAT17_ORYSJ | GATA transcription factor 17 OS=Oryza sativa subsp. japonica GN=GATA17 PE=2 SV=1 | 172 | 218 | 6.0E-06 |
| sp|Q9FH57|GATA5_ARATH | GATA transcription factor 5 OS=Arabidopsis thaliana GN=GATA5 PE=2 SV=1 | 176 | 209 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0043565 | sequence-specific DNA binding | Yes |
| GO:0006355 | regulation of transcription, DNA-templated | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0010468 | regulation of gene expression | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0003677 | DNA binding | No |
| GO:0003674 | molecular_function | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0043169 | cation binding | No |
| GO:0046872 | metal ion binding | No |
| GO:0005488 | binding | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0065007 | biological regulation | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:2000112 | regulation of cellular macromolecule biosynthetic process | No |
| GO:0080090 | regulation of primary metabolic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0050789 | regulation of biological process | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0043167 | ion binding | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| GATA type zinc finger |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4936 LPPGQVPLPSYPISPRHAVPIAPGGHYDPRAQPVHPDEADYAGRARYDASLNRHFETWSYQDSLSRIGSSSRTIF NFAEAYTRIAREQHGSQPIPERLPTEREVGEMLANVDLIKRSLEQVKDAVQASIQSERAREGTKVKGTYEEDHDV PMYGDGMKPQYAMQHEVKKRRGRAAPPGRCHSCNRIDTPEWRRGPDGARTLCNACGLHYAKLERKRQLEARSIRP KPEERS* |
| Coding | >Hirsu2|4936 CTGCCGCCCGGCCAGGTGCCGCTGCCCAGCTACCCCATCTCCCCCCGCCACGCCGTGCCCATCGCGCCCGGCGGC CACTACGACCCCCGCGCCCAGCCCGTCCACCCGGACGAGGCCGACTACGCCGGCCGCGCCCGGTACGACGCCTCG CTCAACCGCCACTTTGAGACGTGGAGCTACCAAGACTCCCTGAGCCGGATCGGCTCCTCGTCGCGCACCATCTTC AACTTCGCCGAGGCCTACACGAGGATCGCGAGGGAACAGCACGGGTCGCAGCCCATCCCCGAGCGGCTGCCGACG GAGCGCGAGGTGGGGGAGATGCTCGCCAACGTCGACCTGATCAAGCGGTCGCTCGAGCAGGTCAAGGACGCCGTC CAGGCCTCGATCCAGAGCGAGAGGGCCCGCGAGGGGACCAAGGTCAAGGGCACCTACGAGGAGGACCACGACGTG CCCATGTACGGCGACGGCATGAAGCCCCAGTACGCCATGCAGCACGAGGTCAAGAAGAGGCGAGGGCGAGCCGCC CCGCCCGGCCGGTGCCACAGCTGCAATCGCATCGACACGCCCGAGTGGCGGCGAGGCCCCGACGGCGCCCGCACC CTCTGCAACGCCTGCGGCCTGCACTACGCCAAGCTGGAGAGGAAACGCCAACTGGAGGCGCGATCGATACGGCCC AAGCCGGAGGAGAGGAGCTAG |
| Transcript | >Hirsu2|4936 CTGCCGCCCGGCCAGGTGCCGCTGCCCAGCTACCCCATCTCCCCCCGCCACGCCGTGCCCATCGCGCCCGGCGGC CACTACGACCCCCGCGCCCAGCCCGTCCACCCGGACGAGGCCGACTACGCCGGCCGCGCCCGGTACGACGCCTCG CTCAACCGCCACTTTGAGACGTGGAGCTACCAAGACTCCCTGAGCCGGATCGGCTCCTCGTCGCGCACCATCTTC AACTTCGCCGAGGCCTACACGAGGATCGCGAGGGAACAGCACGGGTCGCAGCCCATCCCCGAGCGGCTGCCGACG GAGCGCGAGGTGGGGGAGATGCTCGCCAACGTCGACCTGATCAAGCGGTCGCTCGAGCAGGTCAAGGACGCCGTC CAGGCCTCGATCCAGAGCGAGAGGGCCCGCGAGGGGACCAAGGTCAAGGGCACCTACGAGGAGGACCACGACGTG CCCATGTACGGCGACGGCATGAAGCCCCAGTACGCCATGCAGCACGAGGTCAAGAAGAGGCGAGGGCGAGCCGCC CCGCCCGGCCGGTGCCACAGCTGCAATCGCATCGACACGCCCGAGTGGCGGCGAGGCCCCGACGGCGCCCGCACC CTCTGCAACGCCTGCGGCCTGCACTACGCCAAGCTGGAGAGGAAACGCCAACTGGAGGCGCGATCGATACGGCCC AAGCCGGAGGAGAGGAGCTAG |
| Gene | >Hirsu2|4936 CTGCCGCCCGGCCAGGTGCCGCTGCCCAGCTACCCCATCTCCCCCCGCCACGCCGTGCCCATCGCGCCCGGCGGC CACTACGACCCCCGCGCCCAGCCCGTCCACCCGGACGAGGCCGACTACGCCGGCCGCGCCCGGTACGACGCCTCG CTCAACCGCCACTTTGAGACGTGGAGCTACCAAGACTCCCTGAGCCGGGTAGGTGGCCTGCCGCACCCCACGAGG CCCGTGACCTGGCAAGCTGACGTCCGCAGATCGGCTCCTCGTCGCGCACCATCTTCAACTTCGCCGAGGCCTACA CGAGGATCGCGAGGGAACAGCACGGGTCGCAGCCCATCCCCGAGCGGCTGCCGACGGAGCGCGAGGTGGGGGAGA TGCTCGCCAACGTCGACCTGATCAAGCGGTCGCTCGAGCAGGTCAAGGACGCCGTCCAGGCCTCGATCCAGAGCG AGAGGGCCCGCGAGGGGACCAAGGTCAAGGGCACCTACGAGGAGGACCACGACGTGCCCATGTACGGCGACGGCA TGAAGCCCCAGTACGCCATGCAGCACGAGGTCAAGAAGAGGCGAGGGGTAAGTCGGAGAAGCATCCTTTTCCCTC CCGGGCCCGCATACTGAGGGCCGAAAGCAGCGAGCCGCCCCGCCCGGCCGGTGCCACAGCTGCAATCGCATCGAC ACGCCCGAGTGGCGGCGAGGCCCCGACGGCGCCCGCACCCTCTGCAACGCCTGCGGCCTGCACTACGCCAAGCTG GAGAGGAAACGCCAACTGGAGGCGCGATCGATACGGCCCAAGCCGGAGGAGAGGAGCTAG |