Protein ID | Hirsu2|4922 |
Gene name | |
Location | Contig_248:113..1355 |
Strand | + |
Gene length (bp) | 1242 |
Transcript length (bp) | 1242 |
Coding sequence length (bp) | 1242 |
Protein length (aa) | 414 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm|Nucleus | Nuclear localization signal | 0.5933 | 0.5955 | 0.1104 | 0.1099 | 0.0998 | 0.0203 | 0.068 | 0.1296 | 0.0659 | 0.0475 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 15 | 0.999027 |
Orthofinder run ID | 4 |
Orthogroup | 2930 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|4922 MMLMLMLMLVMAVRGHGNGHGHHHHHHHHHHRHHHHHHHHRHHHLDDDDDRDDDDDDDDGATAFASDLGGDTTED EPVPPRKVSSSDALRALSRTPLEEGVVWTVVNADSDIDDAAPELRDPTPAATALPTTESPKVATPKALSSTSSGE VLRRQLDDDDDDESSDDGFLAMAQTRSSRKRPPQPTADVSNAPIKPSPDSATTAASPTNRHAHHPSAARDGKELA SPDHQAQTEKEEEEEEEEEEDEEGVFYFETSGSGPPHSLPQGPEPVSETEEAADDSDPDEETAEALPAQAPEALT SMFATSPAVPIRQSWGSGPSTVTPVKFRPGSLGSYKGRPLMMPIVRDPELLEQANSEGSTRAQACDMGDRIAMEE GSPPRASSTPFSFRERFMMEELMERAKSKKDGKGDEGR* |
Coding | >Hirsu2|4922 ATGATGCTGATGCTGATGCTGATGCTGGTCATGGCCGTCCGTGGTCATGGCAATGGCCACGGTCACCATCATCAT CATCATCATCACCACCATCGTCATCACCATCATCATCATCATCATCGTCATCATCATCTCGACGACGACGACGAC CGAGACGACGACGACGACGATGACGACGGAGCCACCGCCTTCGCCTCGGACCTGGGCGGCGACACGACCGAGGAC GAGCCGGTCCCGCCCCGCAAGGTCTCCTCCTCCGACGCCCTGAGAGCGCTCTCCAGAACGCCTCTGGAGGAGGGT GTCGTCTGGACAGTCGTCAACGCCGACTCAGATATTGACGACGCAGCGCCCGAACTGCGCGATCCGACACCGGCC GCGACGGCACTGCCGACGACAGAGAGCCCGAAAGTCGCCACCCCGAAAGCACTATCCTCGACGAGTAGCGGCGAG GTGTTGAGACGGCAACTGGACGACGACGACGACGACGAGTCGTCCGACGACGGATTCCTTGCCATGGCGCAAACA AGGTCGTCGAGGAAGAGGCCGCCGCAACCCACGGCCGACGTATCGAACGCGCCAATCAAACCTTCGCCCGACAGC GCAACGACAGCAGCAAGTCCCACGAATCGGCATGCGCATCATCCCAGCGCGGCCAGGGACGGCAAGGAGCTAGCG TCACCTGATCATCAGGCACAGACGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAAGGAGTG TTTTACTTCGAGACGAGCGGCTCCGGCCCTCCGCACAGCCTCCCTCAAGGGCCCGAACCAGTGTCCGAGACAGAA GAGGCGGCCGACGATTCGGATCCAGACGAAGAGACAGCGGAGGCGCTGCCCGCGCAGGCACCAGAGGCCCTGACG AGCATGTTCGCGACCTCGCCGGCCGTGCCCATCCGGCAGTCATGGGGCTCGGGACCTTCGACTGTGACGCCCGTC AAGTTTCGGCCCGGATCGCTCGGCTCGTACAAGGGACGGCCCCTGATGATGCCGATAGTGCGCGACCCGGAACTG CTCGAGCAGGCCAACTCGGAGGGGTCGACGAGGGCGCAGGCGTGCGACATGGGCGATCGGATCGCCATGGAGGAG GGCTCGCCGCCACGAGCGTCCAGCACTCCGTTCAGCTTCAGGGAGAGATTCATGATGGAAGAGCTGATGGAGCGG GCGAAATCAAAGAAAGACGGCAAGGGGGACGAGGGCCGGTAG |
Transcript | >Hirsu2|4922 ATGATGCTGATGCTGATGCTGATGCTGGTCATGGCCGTCCGTGGTCATGGCAATGGCCACGGTCACCATCATCAT CATCATCATCACCACCATCGTCATCACCATCATCATCATCATCATCGTCATCATCATCTCGACGACGACGACGAC CGAGACGACGACGACGACGATGACGACGGAGCCACCGCCTTCGCCTCGGACCTGGGCGGCGACACGACCGAGGAC GAGCCGGTCCCGCCCCGCAAGGTCTCCTCCTCCGACGCCCTGAGAGCGCTCTCCAGAACGCCTCTGGAGGAGGGT GTCGTCTGGACAGTCGTCAACGCCGACTCAGATATTGACGACGCAGCGCCCGAACTGCGCGATCCGACACCGGCC GCGACGGCACTGCCGACGACAGAGAGCCCGAAAGTCGCCACCCCGAAAGCACTATCCTCGACGAGTAGCGGCGAG GTGTTGAGACGGCAACTGGACGACGACGACGACGACGAGTCGTCCGACGACGGATTCCTTGCCATGGCGCAAACA AGGTCGTCGAGGAAGAGGCCGCCGCAACCCACGGCCGACGTATCGAACGCGCCAATCAAACCTTCGCCCGACAGC GCAACGACAGCAGCAAGTCCCACGAATCGGCATGCGCATCATCCCAGCGCGGCCAGGGACGGCAAGGAGCTAGCG TCACCTGATCATCAGGCACAGACGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAAGGAGTG TTTTACTTCGAGACGAGCGGCTCCGGCCCTCCGCACAGCCTCCCTCAAGGGCCCGAACCAGTGTCCGAGACAGAA GAGGCGGCCGACGATTCGGATCCAGACGAAGAGACAGCGGAGGCGCTGCCCGCGCAGGCACCAGAGGCCCTGACG AGCATGTTCGCGACCTCGCCGGCCGTGCCCATCCGGCAGTCATGGGGCTCGGGACCTTCGACTGTGACGCCCGTC AAGTTTCGGCCCGGATCGCTCGGCTCGTACAAGGGACGGCCCCTGATGATGCCGATAGTGCGCGACCCGGAACTG CTCGAGCAGGCCAACTCGGAGGGGTCGACGAGGGCGCAGGCGTGCGACATGGGCGATCGGATCGCCATGGAGGAG GGCTCGCCGCCACGAGCGTCCAGCACTCCGTTCAGCTTCAGGGAGAGATTCATGATGGAAGAGCTGATGGAGCGG GCGAAATCAAAGAAAGACGGCAAGGGGGACGAGGGCCGGTAG |
Gene | >Hirsu2|4922 ATGATGCTGATGCTGATGCTGATGCTGGTCATGGCCGTCCGTGGTCATGGCAATGGCCACGGTCACCATCATCAT CATCATCATCACCACCATCGTCATCACCATCATCATCATCATCATCGTCATCATCATCTCGACGACGACGACGAC CGAGACGACGACGACGACGATGACGACGGAGCCACCGCCTTCGCCTCGGACCTGGGCGGCGACACGACCGAGGAC GAGCCGGTCCCGCCCCGCAAGGTCTCCTCCTCCGACGCCCTGAGAGCGCTCTCCAGAACGCCTCTGGAGGAGGGT GTCGTCTGGACAGTCGTCAACGCCGACTCAGATATTGACGACGCAGCGCCCGAACTGCGCGATCCGACACCGGCC GCGACGGCACTGCCGACGACAGAGAGCCCGAAAGTCGCCACCCCGAAAGCACTATCCTCGACGAGTAGCGGCGAG GTGTTGAGACGGCAACTGGACGACGACGACGACGACGAGTCGTCCGACGACGGATTCCTTGCCATGGCGCAAACA AGGTCGTCGAGGAAGAGGCCGCCGCAACCCACGGCCGACGTATCGAACGCGCCAATCAAACCTTCGCCCGACAGC GCAACGACAGCAGCAAGTCCCACGAATCGGCATGCGCATCATCCCAGCGCGGCCAGGGACGGCAAGGAGCTAGCG TCACCTGATCATCAGGCACAGACGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGAGGAAGGAGTG TTTTACTTCGAGACGAGCGGCTCCGGCCCTCCGCACAGCCTCCCTCAAGGGCCCGAACCAGTGTCCGAGACAGAA GAGGCGGCCGACGATTCGGATCCAGACGAAGAGACAGCGGAGGCGCTGCCCGCGCAGGCACCAGAGGCCCTGACG AGCATGTTCGCGACCTCGCCGGCCGTGCCCATCCGGCAGTCATGGGGCTCGGGACCTTCGACTGTGACGCCCGTC AAGTTTCGGCCCGGATCGCTCGGCTCGTACAAGGGACGGCCCCTGATGATGCCGATAGTGCGCGACCCGGAACTG CTCGAGCAGGCCAACTCGGAGGGGTCGACGAGGGCGCAGGCGTGCGACATGGGCGATCGGATCGCCATGGAGGAG GGCTCGCCGCCACGAGCGTCCAGCACTCCGTTCAGCTTCAGGGAGAGATTCATGATGGAAGAGCTGATGGAGCGG GCGAAATCAAAGAAAGACGGCAAGGGGGACGAGGGCCGGTAG |