© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4904 |
| Gene name | |
| Location | Contig_247:9781..10474 |
| Strand | + |
| Gene length (bp) | 693 |
| Transcript length (bp) | 522 |
| Coding sequence length (bp) | 522 |
| Protein length (aa) | 174 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.2049 | 0.1454 | 0.7943 | 0.2012 | 0.2529 | 0.0848 | 0.3434 | 0.23 | 0.2263 | 0.02 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 24 | 0.9993 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 9748 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|4904 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4904 MSCRRLSIIILSTALALWAGRCLALPAAADCLAKFDLSERSNPQLWEALLQASRKGTDDVVECILSQRRVNVNVL GSLGDSALLRAVARRHESTARLLLRDGLANPDPKLKYGITPMKLAQEAGLANMVFLLRLWGQANENFWGYFNDPT LCSFLRYGHILRGHLKLTTTLQL* |
| Coding | >Hirsu2|4904 ATGTCGTGCCGTCGCCTCTCCATCATCATTCTGTCGACAGCCCTGGCTTTGTGGGCTGGCCGGTGTCTGGCCCTG CCCGCGGCCGCCGACTGCCTTGCCAAGTTCGACTTGTCTGAACGCTCCAACCCCCAGCTCTGGGAAGCCCTACTA CAAGCCTCGAGGAAGGGCACCGACGACGTGGTCGAATGTATACTGTCCCAGCGCCGTGTGAACGTCAACGTTCTC GGCAGCCTCGGCGACTCGGCGCTGCTGCGGGCCGTCGCCCGGCGCCACGAGTCTACCGCCAGGCTGCTGCTGCGC GACGGGCTCGCCAACCCCGACCCCAAGCTGAAGTACGGCATCACGCCGATGAAGCTGGCCCAAGAGGCCGGACTC GCCAACATGGTTTTCCTGCTTCGGCTCTGGGGCCAGGCCAACGAAAACTTCTGGGGCTACTTCAATGACCCGACT TTGTGCTCTTTTTTGAGATATGGCCATATACTGCGTGGTCATCTTAAGCTGACGACGACTCTCCAACTTTAG |
| Transcript | >Hirsu2|4904 ATGTCGTGCCGTCGCCTCTCCATCATCATTCTGTCGACAGCCCTGGCTTTGTGGGCTGGCCGGTGTCTGGCCCTG CCCGCGGCCGCCGACTGCCTTGCCAAGTTCGACTTGTCTGAACGCTCCAACCCCCAGCTCTGGGAAGCCCTACTA CAAGCCTCGAGGAAGGGCACCGACGACGTGGTCGAATGTATACTGTCCCAGCGCCGTGTGAACGTCAACGTTCTC GGCAGCCTCGGCGACTCGGCGCTGCTGCGGGCCGTCGCCCGGCGCCACGAGTCTACCGCCAGGCTGCTGCTGCGC GACGGGCTCGCCAACCCCGACCCCAAGCTGAAGTACGGCATCACGCCGATGAAGCTGGCCCAAGAGGCCGGACTC GCCAACATGGTTTTCCTGCTTCGGCTCTGGGGCCAGGCCAACGAAAACTTCTGGGGCTACTTCAATGACCCGACT TTGTGCTCTTTTTTGAGATATGGCCATATACTGCGTGGTCATCTTAAGCTGACGACGACTCTCCAACTTTAG |
| Gene | >Hirsu2|4904 ATGTCGTGCCGTCGCCTCTCCATCATCATTCTGTCGACAGCCCTGGCTTTGTGGGCTGGCCGGTGTCTGGCCCTG CCCGCGGCCGCCGACTGCCTTGCCAAGTTCGACTTGTCTGAACGCTCCAACCCCCAGCTCTGGGAAGCCCTACTA CAAGCCTCGAGGAAGGGCACCGACGACGTGGTCGAATGTATACTGTCCCAGCGCCGTGTGAACGTCAACGTTCTC GGCAGCCTCGGCGACTCGGCGCTGCTGCGGGCCGTCGCCCGGCGCCACGAGTCTACCGCCAGGCTGCTGCTGCGC GACGGGCTCGCCAACCCCGACCCCAAGCTGAAGTACGGCATCACGCCGATGAAGCTGGCCCAAGAGGCCGGACTC GCCAACATGGTTTTCCTGCTTCGGCTCTGGGGCCAGGCCAACGAAAACTTCTGGGGCTACTTCAATGACCCGACT TTGTGCTCTTTTTTGAGATATGGCCATATACTGCGTGGTCATCTTAAGTGGGTTGGAGACGGATGCATTTGCAAA GTTACACGCCCGGATTGGCTCTATCTCCTGCGAAACGACCCCCTGCATCGTCCCATCGGCCGGGGCGTCAGCCGT GATGAAGCAACATGTGTAAGTCTATGTCGCTACCTTGGCCTCTTCTCAAGCCATTGCAATGCTCCGAGGCTGACG ACGACTCTCCAACTTTAG |