© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|49 |
| Gene name | |
| Location | Contig_1003:1354..2377 |
| Strand | - |
| Gene length (bp) | 1023 |
| Transcript length (bp) | 729 |
| Coding sequence length (bp) | 729 |
| Protein length (aa) | 243 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1491 | 0.1496 | 0.5633 | 0.4605 | 0.2181 | 0.0228 | 0.0974 | 0.3148 | 0.1708 | 0.0591 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 22 | 0.999777 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 160 | 182 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2920 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|49 MGRFPPLLVGALSALHILGATAQAPQPPPTPQASGCILACTNQLKAKFQDFNCKNADDAGCLCKNQNFGFGLLCG PSSCAVQRSDPGKGRTGIIPVAPSDECSTFRDPHLHSRRARHNTAVVNKLSGPCRDGHCPRFVHLCDVCFLRNIR FPDQHHHSTVVGIGLGVGGAVIALASIGVGLLLRGRKRKPRPSMEISKPLPGSGRTYGGRGANSFEKYGNDIEMT TNRYEDMVPRQQPRTMV* |
| Coding | >Hirsu2|49 ATGGGCCGCTTCCCGCCGCTGCTCGTCGGAGCCTTGAGCGCCTTGCACATCCTGGGAGCCACGGCCCAGGCGCCT CAGCCACCGCCGACACCGCAGGCGTCAGGATGCATCCTCGCATGCACCAACCAGCTCAAGGCCAAATTTCAAGAC TTCAACTGCAAGAACGCCGACGATGCTGGCTGCCTGTGCAAAAACCAGAACTTTGGCTTCGGCCTTTTGTGCGGG CCATCTTCCTGCGCAGTCCAGCGCTCCGACCCGGGAAAAGGCCGCACCGGCATCATCCCAGTCGCCCCATCCGAC GAATGCTCAACCTTCCGCGACCCCCACCTCCATTCAAGGCGCGCCCGCCACAACACGGCCGTCGTCAACAAGCTC AGCGGCCCATGTCGCGACGGGCACTGCCCCCGCTTCGTCCACCTCTGCGACGTCTGCTTCCTCCGCAACATCCGA TTCCCCGATCAGCACCACCACTCCACCGTGGTCGGAATCGGGCTCGGCGTCGGAGGGGCTGTCATTGCCCTCGCC AGCATAGGCGTTGGCCTCCTGCTGAGAGGCCGCAAGCGAAAGCCGCGTCCGTCGATGGAGATTTCGAAGCCACTT CCCGGCTCGGGCAGAACCTATGGCGGCCGTGGGGCAAACTCGTTTGAGAAGTACGGCAACGACATTGAGATGACG ACGAACCGTTACGAGGACATGGTGCCCCGTCAGCAGCCTCGGACCATGGTTTGA |
| Transcript | >Hirsu2|49 ATGGGCCGCTTCCCGCCGCTGCTCGTCGGAGCCTTGAGCGCCTTGCACATCCTGGGAGCCACGGCCCAGGCGCCT CAGCCACCGCCGACACCGCAGGCGTCAGGATGCATCCTCGCATGCACCAACCAGCTCAAGGCCAAATTTCAAGAC TTCAACTGCAAGAACGCCGACGATGCTGGCTGCCTGTGCAAAAACCAGAACTTTGGCTTCGGCCTTTTGTGCGGG CCATCTTCCTGCGCAGTCCAGCGCTCCGACCCGGGAAAAGGCCGCACCGGCATCATCCCAGTCGCCCCATCCGAC GAATGCTCAACCTTCCGCGACCCCCACCTCCATTCAAGGCGCGCCCGCCACAACACGGCCGTCGTCAACAAGCTC AGCGGCCCATGTCGCGACGGGCACTGCCCCCGCTTCGTCCACCTCTGCGACGTCTGCTTCCTCCGCAACATCCGA TTCCCCGATCAGCACCACCACTCCACCGTGGTCGGAATCGGGCTCGGCGTCGGAGGGGCTGTCATTGCCCTCGCC AGCATAGGCGTTGGCCTCCTGCTGAGAGGCCGCAAGCGAAAGCCGCGTCCGTCGATGGAGATTTCGAAGCCACTT CCCGGCTCGGGCAGAACCTATGGCGGCCGTGGGGCAAACTCGTTTGAGAAGTACGGCAACGACATTGAGATGACG ACGAACCGTTACGAGGACATGGTGCCCCGTCAGCAGCCTCGGACCATGGTTTGA |
| Gene | >Hirsu2|49 ATGGGCCGCTTCCCGCCGCTGCTCGTCGGAGCCTTGAGCGCCTTGCACATCCTGGGAGCCACGGCCCAGGCGCCT CAGCCACCGCCGACACCGCAGGCGTCAGGATGCATCGTACGTTGTCGACGTCGGATGCTGGTAGCACCATATGCT GACCCTGACCCTCCAGCTCGCATGCACCAACCAGCTCAAGGCCAAATTTCAAGACTTCAACTGCAAGAACGCCGA CGATGCTGGCTGCCTGTGCAAAAACCAGAACTTTGGCTTCGGCGTACGTGATTGCAGCGCCAACTGCATCACCGA CAAATCAGCCAAGGTTGACCTGTTTCCCGCCGGAAGCTTTTGTGCGGGTGAGTATGCCCTGCCAAGCCGAGACCC CCAGCTTGAGTCTGACTGCCGGCACTCCAGGCCATCTTCCTGCGCAGTCCAGCGCTCCGACCCGGGAAAAGGCCG CACCGGCATCATCCCAGTCGCCCCATCCGACGAATGCTCAACCTTCCGCGACCCCCACCTCCATTCAAGGCGCGC CCGCCACAACACGGCCGTCGTCAACAAGCTCAGCGGCCCATGTCGCGACGGGCACTGCCCCCGCTTCGTCCACCG TGAGTGCACTTGATACGAGTTTTCAGACGAGGGCCGAGATGCCACTGACACGACGGGAACACCTAGTCTGCGACG TCTGCTTCCTCCGCAACATCCGATTCCCCGATCAGCACCACCACGTCGGCTGCCGCAGCAAGCGACTCCGCCGGC TCCGGCTTACCCCAGTCCACCGTGGTCGGAATCGGGCTCGGCGTCGGAGGGGCTGTCATTGCCCTCGCCAGCATA GGCGTTGGCCTCCTGCTGAGAGGCCGCAAGCGAAAGCCGCGTCCGTCGATGGAGATTTCGAAGCCACTTCCCGGC TCGGGCAGAACCTATGGCGGCCGTGGGGCAAACTCGTTTGAGAAGTACGGCAACGACATTGAGATGACGACGAAC CGTTACGAGGACATGGTGCCCCGTCAGCAGCCTCGGACCATGGTTTGA |