Protein ID | Hirsu2|49 |
Gene name | |
Location | Contig_1003:1354..2377 |
Strand | - |
Gene length (bp) | 1023 |
Transcript length (bp) | 729 |
Coding sequence length (bp) | 729 |
Protein length (aa) | 243 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1491 | 0.1496 | 0.5633 | 0.4605 | 0.2181 | 0.0228 | 0.0974 | 0.3148 | 0.1708 | 0.0591 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 22 | 0.999777 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 160 | 182 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2920 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|49 MGRFPPLLVGALSALHILGATAQAPQPPPTPQASGCILACTNQLKAKFQDFNCKNADDAGCLCKNQNFGFGLLCG PSSCAVQRSDPGKGRTGIIPVAPSDECSTFRDPHLHSRRARHNTAVVNKLSGPCRDGHCPRFVHLCDVCFLRNIR FPDQHHHSTVVGIGLGVGGAVIALASIGVGLLLRGRKRKPRPSMEISKPLPGSGRTYGGRGANSFEKYGNDIEMT TNRYEDMVPRQQPRTMV* |
Coding | >Hirsu2|49 ATGGGCCGCTTCCCGCCGCTGCTCGTCGGAGCCTTGAGCGCCTTGCACATCCTGGGAGCCACGGCCCAGGCGCCT CAGCCACCGCCGACACCGCAGGCGTCAGGATGCATCCTCGCATGCACCAACCAGCTCAAGGCCAAATTTCAAGAC TTCAACTGCAAGAACGCCGACGATGCTGGCTGCCTGTGCAAAAACCAGAACTTTGGCTTCGGCCTTTTGTGCGGG CCATCTTCCTGCGCAGTCCAGCGCTCCGACCCGGGAAAAGGCCGCACCGGCATCATCCCAGTCGCCCCATCCGAC GAATGCTCAACCTTCCGCGACCCCCACCTCCATTCAAGGCGCGCCCGCCACAACACGGCCGTCGTCAACAAGCTC AGCGGCCCATGTCGCGACGGGCACTGCCCCCGCTTCGTCCACCTCTGCGACGTCTGCTTCCTCCGCAACATCCGA TTCCCCGATCAGCACCACCACTCCACCGTGGTCGGAATCGGGCTCGGCGTCGGAGGGGCTGTCATTGCCCTCGCC AGCATAGGCGTTGGCCTCCTGCTGAGAGGCCGCAAGCGAAAGCCGCGTCCGTCGATGGAGATTTCGAAGCCACTT CCCGGCTCGGGCAGAACCTATGGCGGCCGTGGGGCAAACTCGTTTGAGAAGTACGGCAACGACATTGAGATGACG ACGAACCGTTACGAGGACATGGTGCCCCGTCAGCAGCCTCGGACCATGGTTTGA |
Transcript | >Hirsu2|49 ATGGGCCGCTTCCCGCCGCTGCTCGTCGGAGCCTTGAGCGCCTTGCACATCCTGGGAGCCACGGCCCAGGCGCCT CAGCCACCGCCGACACCGCAGGCGTCAGGATGCATCCTCGCATGCACCAACCAGCTCAAGGCCAAATTTCAAGAC TTCAACTGCAAGAACGCCGACGATGCTGGCTGCCTGTGCAAAAACCAGAACTTTGGCTTCGGCCTTTTGTGCGGG CCATCTTCCTGCGCAGTCCAGCGCTCCGACCCGGGAAAAGGCCGCACCGGCATCATCCCAGTCGCCCCATCCGAC GAATGCTCAACCTTCCGCGACCCCCACCTCCATTCAAGGCGCGCCCGCCACAACACGGCCGTCGTCAACAAGCTC AGCGGCCCATGTCGCGACGGGCACTGCCCCCGCTTCGTCCACCTCTGCGACGTCTGCTTCCTCCGCAACATCCGA TTCCCCGATCAGCACCACCACTCCACCGTGGTCGGAATCGGGCTCGGCGTCGGAGGGGCTGTCATTGCCCTCGCC AGCATAGGCGTTGGCCTCCTGCTGAGAGGCCGCAAGCGAAAGCCGCGTCCGTCGATGGAGATTTCGAAGCCACTT CCCGGCTCGGGCAGAACCTATGGCGGCCGTGGGGCAAACTCGTTTGAGAAGTACGGCAACGACATTGAGATGACG ACGAACCGTTACGAGGACATGGTGCCCCGTCAGCAGCCTCGGACCATGGTTTGA |
Gene | >Hirsu2|49 ATGGGCCGCTTCCCGCCGCTGCTCGTCGGAGCCTTGAGCGCCTTGCACATCCTGGGAGCCACGGCCCAGGCGCCT CAGCCACCGCCGACACCGCAGGCGTCAGGATGCATCGTACGTTGTCGACGTCGGATGCTGGTAGCACCATATGCT GACCCTGACCCTCCAGCTCGCATGCACCAACCAGCTCAAGGCCAAATTTCAAGACTTCAACTGCAAGAACGCCGA CGATGCTGGCTGCCTGTGCAAAAACCAGAACTTTGGCTTCGGCGTACGTGATTGCAGCGCCAACTGCATCACCGA CAAATCAGCCAAGGTTGACCTGTTTCCCGCCGGAAGCTTTTGTGCGGGTGAGTATGCCCTGCCAAGCCGAGACCC CCAGCTTGAGTCTGACTGCCGGCACTCCAGGCCATCTTCCTGCGCAGTCCAGCGCTCCGACCCGGGAAAAGGCCG CACCGGCATCATCCCAGTCGCCCCATCCGACGAATGCTCAACCTTCCGCGACCCCCACCTCCATTCAAGGCGCGC CCGCCACAACACGGCCGTCGTCAACAAGCTCAGCGGCCCATGTCGCGACGGGCACTGCCCCCGCTTCGTCCACCG TGAGTGCACTTGATACGAGTTTTCAGACGAGGGCCGAGATGCCACTGACACGACGGGAACACCTAGTCTGCGACG TCTGCTTCCTCCGCAACATCCGATTCCCCGATCAGCACCACCACGTCGGCTGCCGCAGCAAGCGACTCCGCCGGC TCCGGCTTACCCCAGTCCACCGTGGTCGGAATCGGGCTCGGCGTCGGAGGGGCTGTCATTGCCCTCGCCAGCATA GGCGTTGGCCTCCTGCTGAGAGGCCGCAAGCGAAAGCCGCGTCCGTCGATGGAGATTTCGAAGCCACTTCCCGGC TCGGGCAGAACCTATGGCGGCCGTGGGGCAAACTCGTTTGAGAAGTACGGCAACGACATTGAGATGACGACGAAC CGTTACGAGGACATGGTGCCCCGTCAGCAGCCTCGGACCATGGTTTGA |