Protein ID | Hirsu2|4897 |
Gene name | |
Location | Contig_2467:486..1903 |
Strand | - |
Gene length (bp) | 1417 |
Transcript length (bp) | 1341 |
Coding sequence length (bp) | 1341 |
Protein length (aa) | 447 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF08124 | Lyase_8_N | Polysaccharide lyase family 8, N terminal alpha-helical domain | 6.0E-55 | 221 | 406 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P0CZ01|HYSA_PROAC | Hyaluronate lyase OS=Propionibacterium acnes (strain KPA171202 / DSM 16379) GN=PPA0380 PE=3 SV=1 | 216 | 406 | 1.0E-30 |
sp|P0CZ00|HYSA_PROAA | Hyaluronate lyase OS=Propionibacterium acnes PE=1 SV=1 | 216 | 406 | 1.0E-29 |
sp|Q54873|HYSA_STRPN | Hyaluronate lyase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=SP_0314 PE=1 SV=2 | 224 | 424 | 3.0E-25 |
sp|Q9AQS0|XANLY_BACGL | Xanthan lyase OS=Bacillus sp. (strain GL1) GN=xly PE=1 SV=1 | 224 | 417 | 2.0E-23 |
sp|Q53591|HYSA_STRA3 | Hyaluronate lyase OS=Streptococcus agalactiae serotype III (strain NEM316) GN=hylB PE=1 SV=2 | 224 | 406 | 1.0E-21 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P0CZ01|HYSA_PROAC | Hyaluronate lyase OS=Propionibacterium acnes (strain KPA171202 / DSM 16379) GN=PPA0380 PE=3 SV=1 | 216 | 406 | 1.0E-30 |
sp|P0CZ00|HYSA_PROAA | Hyaluronate lyase OS=Propionibacterium acnes PE=1 SV=1 | 216 | 406 | 1.0E-29 |
sp|Q54873|HYSA_STRPN | Hyaluronate lyase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=SP_0314 PE=1 SV=2 | 224 | 424 | 3.0E-25 |
sp|Q9AQS0|XANLY_BACGL | Xanthan lyase OS=Bacillus sp. (strain GL1) GN=xly PE=1 SV=1 | 224 | 417 | 2.0E-23 |
sp|Q53591|HYSA_STRA3 | Hyaluronate lyase OS=Streptococcus agalactiae serotype III (strain NEM316) GN=hylB PE=1 SV=2 | 224 | 406 | 1.0E-21 |
sp|Q59801|HYSA_STAA8 | Hyaluronate lyase OS=Staphylococcus aureus (strain NCTC 8325) GN=hysA PE=3 SV=1 | 224 | 406 | 9.0E-15 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.2312 | 0.1037 | 0.9184 | 0.0813 | 0.1562 | 0.0375 | 0.2734 | 0.2404 | 0.2652 | 0.0158 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 16 | 0.998618 |
Orthofinder run ID | 4 |
Orthogroup | 84 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|4897 MRLGGLVPVLFALGALCGDTTPNSTQTAQKDLVLLQPAGPTQPGLAADLNCNGFIEIRPGDDCLDIAERAGADER QVTKWNSPTDPRCRGLRDGHWGCVSVGPNFDKLRLRWRELILETDFPADSEPFAARLASLGRQAARHRDSFAPTT GQLWADLPYMYADVDINPGNKSVPLCCVDPDVAPEDESGPTPAVDTDVDSEDKPGPLPSADSDTNAGDKPRPPSS AVTRTFERLLIMANAWAQRGTGLTGDSGLLAVILEGLDRLQGEVYNDSQTMYGNWWDWKIGIPRALMDLCALLDG HLGADRVAGLVAANDHFVPNSAVASYRGTSTAANRVDLCRSIVFSGIFGSAPARLDVARDALPPVFDLVTSGDGF YADGSFVQHGNVPYTGTYGAEMIKGLAGLIPSRPSSTTAWPWTASRAAPSAAGAGAATTAAATTSWPASCC* |
Coding | >Hirsu2|4897 ATGAGGCTCGGCGGGCTGGTCCCCGTCCTGTTCGCCCTGGGGGCTCTCTGCGGTGACACGACTCCTAACAGCACG CAAACGGCCCAGAAAGATCTGGTCCTGTTGCAGCCAGCAGGGCCAACTCAGCCCGGGCTTGCCGCGGACCTGAAC TGCAATGGATTCATCGAGATCAGACCGGGGGATGACTGTCTTGACATCGCCGAAAGGGCCGGGGCCGACGAACGT CAGGTCACCAAGTGGAACTCGCCGACGGACCCTCGTTGTCGCGGTCTCCGGGACGGGCACTGGGGCTGCGTCTCG GTCGGGCCGAATTTCGACAAGTTGCGGCTGCGCTGGCGCGAGCTCATCCTCGAGACCGATTTCCCTGCCGACTCG GAGCCGTTCGCGGCCAGGCTCGCCTCTCTGGGAAGGCAGGCGGCCCGGCACCGTGACAGCTTCGCTCCGACCACC GGCCAACTCTGGGCCGACCTGCCGTACATGTACGCCGATGTGGACATCAACCCCGGCAACAAGTCCGTTCCTCTC TGCTGCGTCGATCCGGATGTCGCCCCCGAGGACGAGTCCGGACCGACCCCGGCTGTCGATACGGATGTCGACTCC GAGGACAAGCCCGGACCACTCCCCTCTGCCGATTCGGACACGAACGCCGGCGACAAGCCCCGCCCACCCTCCTCC GCCGTCACCCGGACCTTCGAACGGCTTCTCATCATGGCCAACGCCTGGGCCCAGCGAGGCACCGGCCTGACCGGC GACTCGGGCCTGCTGGCCGTGATCCTCGAGGGCCTCGACCGGCTGCAGGGCGAGGTCTACAACGACTCCCAGACC ATGTACGGGAACTGGTGGGACTGGAAGATCGGGATCCCCCGGGCGCTCATGGACCTGTGCGCGCTCCTGGACGGC CATCTCGGCGCCGACCGCGTCGCCGGGCTGGTGGCGGCCAACGACCACTTCGTGCCGAACTCGGCCGTCGCCAGC TACCGCGGGACCAGCACGGCGGCCAACCGGGTCGACCTGTGCCGGTCCATCGTCTTCTCCGGCATCTTCGGCTCG GCGCCGGCGCGGCTCGACGTGGCTCGCGACGCCCTCCCGCCGGTCTTCGACCTGGTCACCTCGGGCGACGGCTTC TACGCCGACGGCTCCTTCGTCCAGCACGGGAACGTCCCGTACACGGGCACGTACGGCGCCGAGATGATCAAGGGC CTGGCCGGGCTAATTCCTTCGCGCCCGTCATCTACAACGGCCTGGCCATGGACGGCGTCTCGGGCCGCGCCATCA GCCGCGGGCGCCGGAGCAGCGACCACAGCCGCGGCCACGACATCATGGCCAGCATCCTGCTGCTGA |
Transcript | >Hirsu2|4897 ATGAGGCTCGGCGGGCTGGTCCCCGTCCTGTTCGCCCTGGGGGCTCTCTGCGGTGACACGACTCCTAACAGCACG CAAACGGCCCAGAAAGATCTGGTCCTGTTGCAGCCAGCAGGGCCAACTCAGCCCGGGCTTGCCGCGGACCTGAAC TGCAATGGATTCATCGAGATCAGACCGGGGGATGACTGTCTTGACATCGCCGAAAGGGCCGGGGCCGACGAACGT CAGGTCACCAAGTGGAACTCGCCGACGGACCCTCGTTGTCGCGGTCTCCGGGACGGGCACTGGGGCTGCGTCTCG GTCGGGCCGAATTTCGACAAGTTGCGGCTGCGCTGGCGCGAGCTCATCCTCGAGACCGATTTCCCTGCCGACTCG GAGCCGTTCGCGGCCAGGCTCGCCTCTCTGGGAAGGCAGGCGGCCCGGCACCGTGACAGCTTCGCTCCGACCACC GGCCAACTCTGGGCCGACCTGCCGTACATGTACGCCGATGTGGACATCAACCCCGGCAACAAGTCCGTTCCTCTC TGCTGCGTCGATCCGGATGTCGCCCCCGAGGACGAGTCCGGACCGACCCCGGCTGTCGATACGGATGTCGACTCC GAGGACAAGCCCGGACCACTCCCCTCTGCCGATTCGGACACGAACGCCGGCGACAAGCCCCGCCCACCCTCCTCC GCCGTCACCCGGACCTTCGAACGGCTTCTCATCATGGCCAACGCCTGGGCCCAGCGAGGCACCGGCCTGACCGGC GACTCGGGCCTGCTGGCCGTGATCCTCGAGGGCCTCGACCGGCTGCAGGGCGAGGTCTACAACGACTCCCAGACC ATGTACGGGAACTGGTGGGACTGGAAGATCGGGATCCCCCGGGCGCTCATGGACCTGTGCGCGCTCCTGGACGGC CATCTCGGCGCCGACCGCGTCGCCGGGCTGGTGGCGGCCAACGACCACTTCGTGCCGAACTCGGCCGTCGCCAGC TACCGCGGGACCAGCACGGCGGCCAACCGGGTCGACCTGTGCCGGTCCATCGTCTTCTCCGGCATCTTCGGCTCG GCGCCGGCGCGGCTCGACGTGGCTCGCGACGCCCTCCCGCCGGTCTTCGACCTGGTCACCTCGGGCGACGGCTTC TACGCCGACGGCTCCTTCGTCCAGCACGGGAACGTCCCGTACACGGGCACGTACGGCGCCGAGATGATCAAGGGC CTGGCCGGGCTAATTCCTTCGCGCCCGTCATCTACAACGGCCTGGCCATGGACGGCGTCTCGGGCCGCGCCATCA GCCGCGGGCGCCGGAGCAGCGACCACAGCCGCGGCCACGACATCATGGCCAGCATCCTGCTGCTGA |
Gene | >Hirsu2|4897 ATGAGGCTCGGCGGGCTGGTCCCCGTCCTGTTCGCCCTGGGGGCTCTCTGCGGTGACACGACTCCTAACAGCACG CAAACGGCCCAGAAAGATCTGGTCCTGTTGCAGCCAGCAGGGCCAACTCAGCCCGGGCTTGCCGCGGACCTGAAC TGCAATGGATTCATCGAGATCAGACCGGGGGATGACTGTCTTGACATCGCCGAAAGGGCCGGGGCCGACGAACGT CAGGTCACCAAGTGGAACTCGCCGACGGACCCTCGTTGTCGCGGTCTCCGGGACGGGCACTGGGGCTGCGTCTCG GTCGGGCCGAATTTCGACAAGTTGCGGCTGCGCTGGCGCGAGCTCATCCTCGAGACCGATTTCCCTGCCGACTCG GAGCCGTTCGCGGCCAGGCTCGCCTCTCTGGGAAGGCAGGCGGCCCGGCACCGTGACAGCTTCGCTCCGACCACC GGCCAACTCTGGGCCGACCTGCCGTACATGTACGCCGATGTGGACATCAACCCCGGCAACAAGTCCGTTCCTCTC TGCTGCGTCGATCCGGATGTCGCCCCCGAGGACGAGTCCGGACCGACCCCGGCTGTCGATACGGATGTCGACTCC GAGGACAAGCCCGGACCACTCCCCTCTGCCGATTCGGACACGAACGCCGGCGACAAGCCCCGCCCACCCTCCTCC GCCGTCACCCGGACCTTCGAACGGCTTCTCATCATGGCCAACGCCTGGGCCCAGCGAGGCACCGGCCTGACCGGC GACTCGGGCCTGCTGGCCGTGATCCTCGAGGGCCTCGACCGGCTGCAGGGCGAGGTCTACAACGACTCCCAGACC ATGTACGGGAACTGGTGGGACTGGAAGATCGGGATCCCCCGGGCGCTCATGGACCTGTGCGCGCTCCTGGACGGC CATCTCGGCGCCGACCGCGTCGCCGGGCTGGTGGCGGCCAACGACCACTTCGTGCCGAACTCGGCCGTCGCCAGC TACCGCGGGACCAGCACGGCGGCCAACCGGGTCGACCTGTGCCGGTCCATCGTCTTCTCCGGCATCTTCGGCTCG GCGCCGGCGCGGCTCGACGTGGCTCGCGACGCCCTCCCGCCGGTCTTCGACCTGGTCACCTCGGGCGACGGCTTC TACGCCGACGGCTCCTTCGTCCAGCACGGGAACGTCCCGTACACGGGCACGTACGGCGCCGAGATGATCAAGGGC CTGGCCGGGCTGTCCGCCCTCTTCGCGGGCTCTGACTGGCGACTCATCACCAGCCCGAGCTGGCAGCTGTTCCTC AACAGCGTCGAGAATTCCTTCGCGCCCGTCATCTACAACGGCCTGGCCATGGACGGCGTCTCGGGCCGCGCCATC AGCCGCGGGCGCCGGAGCAGCGACCACAGCCGCGGCCACGACATCATGGCCAGCATCCTGCTGCTGA |