© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4877 |
| Gene name | |
| Location | Contig_2458:154..2001 |
| Strand | + |
| Gene length (bp) | 1847 |
| Transcript length (bp) | 1503 |
| Coding sequence length (bp) | 1503 |
| Protein length (aa) | 501 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04082 | Fungal_trans | Fungal specific transcription factor domain | 5.2E-08 | 381 | 482 |
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 1.0E-02 | 47 | 71 |
| PF00096 | zf-C2H2 | Zinc finger, C2H2 type | 4.2E-04 | 77 | 100 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12139|YP022_YEAST | Zinc finger protein YPR022C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPR022C PE=1 SV=1 | 56 | 160 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | Yes |
| GO:0003677 | DNA binding | Yes |
| GO:0008270 | zinc ion binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0034654 | nucleobase-containing compound biosynthetic process | No |
| GO:0009987 | cellular process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0032774 | RNA biosynthetic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0005488 | binding | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0009058 | biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0097659 | nucleic acid-templated transcription | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0046914 | transition metal ion binding | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0019438 | aromatic compound biosynthetic process | No |
| GO:0018130 | heterocycle biosynthetic process | No |
| GO:0008152 | metabolic process | No |
| GO:0046872 | metal ion binding | No |
| GO:0043167 | ion binding | No |
| GO:0044238 | primary metabolic process | No |
| GO:0043169 | cation binding | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.4039 | 0.8541 | 0.0428 | 0.0226 | 0.1031 | 0.0073 | 0.0828 | 0.0765 | 0.0647 | 0.0024 |
| Transcription Factor Class (based on PFAM domains) |
|---|
| Fungal Specific TF |
| C2H2 zinc finger |
| Orthofinder run ID | 4 |
| Orthogroup | 865 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4877 MDPSYGQTYAHGHAGAPYPSASVRPFVPKLTPVTKRVSRAKKGLAVHTCDLCRPPKTFTRAEHLRRHQLSHQPPA LECQVPGCDKVFHRKDLLERHQQRHDHDERLSASPRRRSTSHPNSHGSPGGRSSYGERPLGPSPTHAASPFRSSP PGTSPPSSTRGREMPLGPQGWPAAGGSTPQMLSHEDFSMPESTGVDILYGVTSTPSPGSWHDPSSSDSNYSTPPP TSDGNPAAAIRASVEWNGPMAPVAAVSRSVPGSLDAGGPYSSHPFGYPSSSPPPAAPHGYPPAFGEPAGLSYPRY EELYGSPVPSAAAARSLSPQMGVGPCSETLMTAPAAVPADRMMGSSVAAYDLPPETALGLLAAQDALQLGPDLAE NMATYLNFYWEKVHPTYPIIHRATFEDAAGLDADHLEILRCAMAAVATQFLPQRDHRIRGSQLHACAWQMCEAVL AQSASWTLPIMQAVLLCEYYARFRGRSKGAYRPSPRFNELYRMVSCPSPS* |
| Coding | >Hirsu2|4877 ATGGATCCCTCCTACGGGCAGACCTACGCCCACGGGCACGCCGGCGCGCCCTATCCCAGCGCCTCCGTGAGGCCC TTCGTCCCCAAGCTGACGCCCGTCACCAAGAGGGTAAGCCGGGCGAAGAAGGGCCTGGCGGTCCACACTTGCGAT CTCTGCCGGCCCCCCAAGACCTTTACCAGGGCCGAGCACCTGAGGCGACACCAACTGAGCCATCAACCACCCGCC CTGGAATGCCAGGTCCCCGGCTGTGACAAGGTCTTTCATCGCAAGGACCTGCTGGAGCGCCACCAGCAGAGACAT GATCACGACGAAAGGCTGTCTGCCAGTCCCCGTCGCCGCTCGACGAGCCACCCAAACAGCCATGGGAGCCCGGGC GGCCGGAGCAGCTACGGCGAGCGGCCGCTGGGGCCGTCGCCCACGCACGCGGCGTCGCCCTTCAGGAGCTCGCCC CCGGGGACGAGCCCGCCGTCGAGCACGCGGGGCCGTGAGATGCCGCTGGGCCCGCAGGGCTGGCCAGCAGCGGGC GGATCGACGCCCCAGATGCTGTCGCACGAAGACTTCTCGATGCCCGAGTCGACGGGGGTAGACATCCTGTACGGC GTCACGTCGACGCCGTCGCCGGGCTCGTGGCACGATCCGTCCAGCTCGGACAGCAACTACTCGACGCCGCCGCCG ACGTCGGACGGCAACCCGGCCGCCGCCATCCGCGCGAGCGTGGAGTGGAACGGGCCGATGGCCCCGGTGGCGGCG GTCTCGAGGAGCGTCCCTGGGTCCCTGGACGCCGGCGGCCCCTATTCGTCGCACCCGTTCGGCTACCCTTCGTCG TCCCCGCCGCCGGCCGCGCCGCACGGGTACCCGCCGGCGTTCGGCGAGCCGGCCGGGCTGTCGTACCCGCGGTAC GAGGAGCTGTACGGGTCGCCGGTGCCGAGCGCGGCGGCGGCGCGCAGCCTGTCGCCGCAGATGGGCGTGGGCCCC TGCTCGGAGACGCTGATGACGGCGCCGGCGGCGGTGCCGGCGGACCGGATGATGGGCTCGTCGGTGGCGGCGTAC GACCTGCCGCCGGAGACGGCGCTCGGGCTGCTGGCGGCGCAGGACGCGCTGCAGCTGGGGCCGGACCTGGCCGAG AACATGGCGACCTACCTCAACTTCTACTGGGAAAAGGTGCACCCGACCTACCCCATCATCCACCGCGCCACCTTC GAGGACGCCGCCGGCCTCGACGCCGACCACCTCGAGATCCTCCGCTGCGCCATGGCCGCCGTCGCCACCCAGTTC CTGCCGCAGCGCGACCACCGGATCCGCGGCAGCCAGCTGCACGCCTGCGCCTGGCAGATGTGCGAGGCGGTGCTG GCGCAGTCGGCGAGCTGGACGCTGCCCATCATGCAGGCCGTCCTGCTGTGCGAGTACTACGCGCGCTTCCGCGGC CGCAGCAAGGGCGCCTATCGCCCGTCGCCTCGATTCAACGAGTTGTACCGAATGGTCAGTTGCCCAAGCCCTTCC TGA |
| Transcript | >Hirsu2|4877 ATGGATCCCTCCTACGGGCAGACCTACGCCCACGGGCACGCCGGCGCGCCCTATCCCAGCGCCTCCGTGAGGCCC TTCGTCCCCAAGCTGACGCCCGTCACCAAGAGGGTAAGCCGGGCGAAGAAGGGCCTGGCGGTCCACACTTGCGAT CTCTGCCGGCCCCCCAAGACCTTTACCAGGGCCGAGCACCTGAGGCGACACCAACTGAGCCATCAACCACCCGCC CTGGAATGCCAGGTCCCCGGCTGTGACAAGGTCTTTCATCGCAAGGACCTGCTGGAGCGCCACCAGCAGAGACAT GATCACGACGAAAGGCTGTCTGCCAGTCCCCGTCGCCGCTCGACGAGCCACCCAAACAGCCATGGGAGCCCGGGC GGCCGGAGCAGCTACGGCGAGCGGCCGCTGGGGCCGTCGCCCACGCACGCGGCGTCGCCCTTCAGGAGCTCGCCC CCGGGGACGAGCCCGCCGTCGAGCACGCGGGGCCGTGAGATGCCGCTGGGCCCGCAGGGCTGGCCAGCAGCGGGC GGATCGACGCCCCAGATGCTGTCGCACGAAGACTTCTCGATGCCCGAGTCGACGGGGGTAGACATCCTGTACGGC GTCACGTCGACGCCGTCGCCGGGCTCGTGGCACGATCCGTCCAGCTCGGACAGCAACTACTCGACGCCGCCGCCG ACGTCGGACGGCAACCCGGCCGCCGCCATCCGCGCGAGCGTGGAGTGGAACGGGCCGATGGCCCCGGTGGCGGCG GTCTCGAGGAGCGTCCCTGGGTCCCTGGACGCCGGCGGCCCCTATTCGTCGCACCCGTTCGGCTACCCTTCGTCG TCCCCGCCGCCGGCCGCGCCGCACGGGTACCCGCCGGCGTTCGGCGAGCCGGCCGGGCTGTCGTACCCGCGGTAC GAGGAGCTGTACGGGTCGCCGGTGCCGAGCGCGGCGGCGGCGCGCAGCCTGTCGCCGCAGATGGGCGTGGGCCCC TGCTCGGAGACGCTGATGACGGCGCCGGCGGCGGTGCCGGCGGACCGGATGATGGGCTCGTCGGTGGCGGCGTAC GACCTGCCGCCGGAGACGGCGCTCGGGCTGCTGGCGGCGCAGGACGCGCTGCAGCTGGGGCCGGACCTGGCCGAG AACATGGCGACCTACCTCAACTTCTACTGGGAAAAGGTGCACCCGACCTACCCCATCATCCACCGCGCCACCTTC GAGGACGCCGCCGGCCTCGACGCCGACCACCTCGAGATCCTCCGCTGCGCCATGGCCGCCGTCGCCACCCAGTTC CTGCCGCAGCGCGACCACCGGATCCGCGGCAGCCAGCTGCACGCCTGCGCCTGGCAGATGTGCGAGGCGGTGCTG GCGCAGTCGGCGAGCTGGACGCTGCCCATCATGCAGGCCGTCCTGCTGTGCGAGTACTACGCGCGCTTCCGCGGC CGCAGCAAGGGCGCCTATCGCCCGTCGCCTCGATTCAACGAGTTGTACCGAATGGTCAGTTGCCCAAGCCCTTCC TGA |
| Gene | >Hirsu2|4877 ATGGATCCCTCCTACGGGCAGACCTACGCCCACGGGCACGCCGGCGCGCCCTATCCCAGCGCCTCCGTGAGGCCC TTCGTCCCCAAGCTGACGCCCGTCACCAAGAGGGTAAGCCGGGCGAAGAAGGGCCTGGCGGTCCACACTTGCGAT CTCTGCCGGCCCCCCAAGGTACCGATCCGCTTCCGCCCCTCGACCTCGACTGGCTGACTGACGATGCCGCCTCAC CCTTGCCTGTCCAGACCTTTACCAGGGCCGAGCACCTGAGGTTCGTTGTTGCCTTTCTCCCCCCGTCTCTCTCCG TCTCCTTTGCCCGAGACCGAGGACGGGTTCAGGCCGGACTGACTGACACGTTCCTCGTTCCCTCTCCAGGCGACA CCAACTGAGCCATCAACCACCCGCCCTGGAATGCCAGGTCCCCGGCTGTGACAAGGTCTTTCATCGCAAGGACCT GCTGGAGCGCCACCAGCAGAGACAGTACGTTTGAGGAGTCGCGCCCAGCTCCCCCCCCCCCCCCCCCCCCCCCCC CCCTTCCCTTGTCACGCTCCGGCCGCTCACGCGAGAGGCAGTGATCACGACGAAAGGCTGTCTGCCAGTCCCCGT CGCCGCTCGACGAGCCACCCAAACAGCCATGGGAGCCCGGGCGGCCGGAGCAGCTACGGCGAGCGGCCGCTGGGG CCGTCGCCCACGCACGCGGCGTCGCCCTTCAGGAGCTCGCCCCCGGGGACGAGCCCGCCGTCGAGCACGCGGGGC CGTGAGATGCCGCTGGGCCCGCAGGGCTGGCCAGCAGCGGGCGGATCGACGCCCCAGATGCTGTCGCACGAAGAC TTCTCGATGCCCGAGTCGACGGGGGTAGACATCCTGTACGGCGTCACGTCGACGCCGTCGCCGGGCTCGTGGCAC GATCCGTCCAGCTCGGACAGCAACTACTCGACGCCGCCGCCGACGTCGGACGGCAACCCGGCCGCCGCCATCCGC GCGAGCGTGGAGTGGAACGGGCCGATGGCCCCGGTGGCGGCGGTCTCGAGGAGCGTCCCTGGGTCCCTGGACGCC GGCGGCCCCTATTCGTCGCACCCGTTCGGCTACCCTTCGTCGTCCCCGCCGCCGGCCGCGCCGCACGGGTACCCG CCGGCGTTCGGCGAGCCGGCCGGGCTGTCGTACCCGCGGTACGAGGAGCTGTACGGGTCGCCGGTGCCGAGCGCG GCGGCGGCGCGCAGCCTGTCGCCGCAGATGGGCGTGGGCCCCTGCTCGGAGACGCTGATGACGGCGCCGGCGGCG GTGCCGGCGGACCGGATGATGGGCTCGTCGGTGGCGGCGTACGACCTGCCGCCGGAGACGGCGCTCGGGCTGCTG GCGGCGCAGGACGCGCTGCAGCTGGGGCCGGACCTGGCCGAGAACATGGCGACCTACCTCAACTTCTACTGGGAA AAGGTGCACCCGACCTACCCCATCATCCACCGCGCCACCTTCGAGGACGCCGCCGGCCTCGACGCCGACCACCTC GAGATCCTCCGCTGCGCCATGGCCGCCGTCGCCACCCAGTTCCTGCCGCAGCGCGACCACCGGATCCGCGGCAGC CAGCTGCACGCCTGCGCCTGGCAGATGTGCGAGGCGGTGGTGAGTGTGCCCCCATCCATCGTGACCGAGACGGAC CTCGGCGGCTGCTGACGGGCCCTTGTTCCTGCGACATACAGCTGGCGCAGTCGGCGAGCTGGACGCTGCCCATCA TGCAGGCCGTCCTGCTGTGCGAGTACTACGCGCGCTTCCGCGGCCGCAGCAAGGGCGCCTATCGCCCGTCGCCTC GATTCAACGAGTTGTACCGAATGGTCAGTTGCCCAAGCCCTTCCTGA |