© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4855 |
| Gene name | |
| Location | Contig_2443:96..2238 |
| Strand | - |
| Gene length (bp) | 2142 |
| Transcript length (bp) | 2001 |
| Coding sequence length (bp) | 2001 |
| Protein length (aa) | 667 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04433 | SWIRM | SWIRM domain | 1.3E-32 | 91 | 176 |
| PF16495 | SWIRM-assoc_1 | SWIRM-associated region 1 | 1.1E-29 | 533 | 614 |
| PF00249 | Myb_DNA-binding | Myb-like DNA-binding domain | 2.3E-10 | 353 | 395 |
| PF13921 | Myb_DNA-bind_6 | Myb-like DNA-binding domain | 3.6E-06 | 354 | 396 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14470|SSR2_SCHPO | SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3 | 81 | 629 | 9.0E-93 |
| sp|O13788|SSR1_SCHPO | SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1 | 58 | 614 | 2.0E-80 |
| sp|P43609|RSC8_YEAST | Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC8 PE=1 SV=1 | 51 | 437 | 3.0E-80 |
| sp|P32591|SWI3_YEAST | SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1 | 82 | 610 | 8.0E-75 |
| sp|Q8TAQ2|SMRC2_HUMAN | SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1 | 57 | 210 | 2.0E-58 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14470|SSR2_SCHPO | SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3 | 81 | 629 | 9.0E-93 |
| sp|O13788|SSR1_SCHPO | SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1 | 58 | 614 | 2.0E-80 |
| sp|P43609|RSC8_YEAST | Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSC8 PE=1 SV=1 | 51 | 437 | 3.0E-80 |
| sp|P32591|SWI3_YEAST | SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWI3 PE=1 SV=1 | 82 | 610 | 8.0E-75 |
| sp|Q8TAQ2|SMRC2_HUMAN | SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1 | 57 | 210 | 2.0E-58 |
| sp|Q6PDG5|SMRC2_MOUSE | SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2 | 57 | 210 | 2.0E-58 |
| sp|Q9XI07|SWI3C_ARATH | SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1 SV=1 | 89 | 600 | 3.0E-58 |
| sp|Q92922|SMRC1_HUMAN | SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3 | 80 | 205 | 5.0E-53 |
| sp|P97496|SMRC1_MOUSE | SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2 | 80 | 205 | 6.0E-53 |
| sp|Q84JG2|SWI3B_ARATH | SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1 | 83 | 614 | 8.0E-34 |
| sp|Q8W475|SWI3A_ARATH | SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1 | 90 | 404 | 5.0E-29 |
| sp|Q8VY05|SWI3D_ARATH | SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1 SV=3 | 89 | 402 | 2.0E-25 |
| sp|Q54J55|MYBX_DICDI | Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1 | 290 | 460 | 4.0E-18 |
| sp|Q8TAQ2|SMRC2_HUMAN | SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1 | 369 | 454 | 9.0E-14 |
| sp|Q6PDG5|SMRC2_MOUSE | SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2 | 369 | 454 | 1.0E-13 |
| sp|Q92922|SMRC1_HUMAN | SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3 | 369 | 446 | 1.0E-12 |
| sp|P97496|SMRC1_MOUSE | SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2 | 369 | 446 | 1.0E-12 |
| sp|Q5RGA4|MYSM1_DANRE | Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2 | 91 | 179 | 4.0E-10 |
| sp|Q9P7J7|ADA2_SCHPO | Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ada2 PE=1 SV=1 | 284 | 398 | 8.0E-07 |
| sp|Q8TAQ2|SMRC2_HUMAN | SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1 | 549 | 603 | 5.0E-06 |
| sp|Q6PDG5|SMRC2_MOUSE | SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2 | 549 | 603 | 5.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4855 MEDSQLNGAEFEQKINTSGTLDRPNVEDRPMSGVMAGADEEIGDVPVNSNEPTMLGQNISAGEGHEMQSKDATEL AARGHLMSQTHSIVLPSYSTWFDMNTIHDIERKAMAEFFNNRNRSKTPAVYKDYRDFMINTYRLNPAEYLTVTAC RRNLAGDVCAIMRVHAFLEQWGLINYQVDADQRPSHVGPPFTGHFRIICDTPRGLQAWQPSADPVVLEGKRNIET DRKANATTTVKSHLNLEVGRNIYEANAKTTTITKPEPKTNGDALASNGGLSTEPIAAQPMSKVNCYQCGNDCTRV YFHSTQADPNAKADLDVCPLCFTEGRLPANHTSSMYAKIENPAYEGGSDRDAPWTDAETLRLLEGLERFDEDWAE VSDHVGTRTREECVLRFLQLDIEEKYLGSDGPVNAPTGLSMLGSQQGHLPFSSVDNPVMSVVGFLASLANPSSTA AAARKSADLLKQSLRKQLHGGRVEEGNEADQQEHQVGRRDGGDKNAELGKRESMDTDMRQEVIDGQRSDIMNNET SNTTLASVPLASIGARASAFASHEEREMTRLVSAAANVTLQKLELKLKYFNELEALLRAERRELERGRQQLFLDR LTFRRRVRQVEEKVRLSGVVGGEQGARTVHESVIAETQRLGFQLLPEESNASQLAGSDRHIRTHEV* |
| Coding | >Hirsu2|4855 ATGGAAGACAGCCAGCTGAACGGGGCCGAATTCGAGCAGAAAATCAACACTTCCGGGACACTCGATCGACCCAAC GTGGAAGACAGACCCATGTCCGGGGTTATGGCTGGTGCCGATGAGGAAATCGGCGATGTGCCAGTCAATTCCAAT GAACCTACAATGTTAGGCCAAAACATCTCTGCCGGCGAAGGGCACGAAATGCAGTCAAAAGATGCTACCGAGCTG GCAGCGCGAGGACACCTGATGTCGCAGACGCATTCGATTGTTCTACCCAGCTACAGTACTTGGTTTGATATGAAC ACCATCCACGACATAGAACGTAAGGCCATGGCAGAGTTCTTTAACAATCGAAATAGAAGCAAAACTCCTGCAGTC TACAAGGACTATCGCGATTTTATGATCAACACATATCGGCTAAACCCGGCGGAATATTTAACTGTGACAGCCTGT CGACGGAATCTGGCCGGCGATGTCTGTGCCATCATGCGAGTGCATGCATTTTTGGAACAATGGGGCCTGATAAAC TATCAGGTTGATGCCGATCAACGACCATCGCATGTTGGACCTCCCTTCACCGGCCACTTCCGAATTATTTGCGAC ACCCCTCGTGGACTTCAAGCCTGGCAGCCCTCTGCCGATCCAGTCGTGTTAGAAGGGAAAAGGAACATCGAAACA GATAGGAAGGCAAATGCAACGACTACGGTCAAAAGCCATCTAAACCTCGAAGTTGGTCGTAATATATACGAGGCT AATGCAAAAACAACCACAATTACCAAGCCTGAACCCAAGACGAATGGAGACGCGCTTGCGTCAAATGGGGGGCTT AGCACGGAACCTATTGCCGCACAGCCCATGTCGAAAGTCAACTGTTATCAATGTGGGAATGACTGCACGCGCGTT TATTTCCACAGCACGCAAGCAGATCCCAACGCCAAGGCTGATCTCGACGTTTGCCCATTGTGTTTTACCGAAGGC CGATTACCCGCAAATCATACGTCAAGCATGTACGCAAAGATTGAGAACCCAGCCTACGAAGGTGGCTCGGACCGG GATGCCCCTTGGACTGATGCCGAAACACTCCGGTTACTCGAAGGACTTGAAAGATTCGATGAAGATTGGGCAGAA GTTTCAGACCACGTGGGTACCAGGACTCGCGAGGAATGCGTCTTGCGATTCCTTCAACTGGACATTGAAGAGAAA TACCTGGGTTCGGACGGCCCTGTCAATGCGCCGACGGGGCTTTCAATGCTCGGTTCTCAACAGGGCCATTTGCCA TTCAGCTCGGTGGATAATCCCGTAATGTCCGTGGTGGGCTTCCTGGCAAGCCTGGCGAACCCTTCTAGCACAGCC GCTGCAGCACGGAAATCAGCCGATCTTTTGAAACAGAGTCTACGGAAGCAGCTGCATGGCGGACGGGTCGAGGAG GGCAATGAGGCTGACCAGCAGGAACATCAAGTCGGCAGGCGCGATGGCGGAGACAAAAACGCCGAACTGGGCAAG CGTGAATCGATGGACACGGACATGCGCCAGGAGGTAATTGATGGTCAAAGGAGCGACATAATGAATAACGAGACT TCAAACACTACACTTGCGTCGGTACCACTGGCGTCCATCGGAGCTCGAGCTTCCGCGTTTGCCTCGCACGAGGAG CGTGAGATGACACGTTTGGTATCAGCGGCAGCAAATGTGACACTTCAAAAATTAGAACTGAAGCTGAAGTATTTC AATGAATTGGAAGCCTTACTGCGGGCGGAGCGAAGGGAGTTGGAGCGAGGACGGCAACAACTGTTCTTGGACCGT CTCACATTCAGGAGGAGGGTGCGGCAGGTCGAGGAGAAAGTAAGACTGTCAGGTGTCGTGGGAGGCGAGCAGGGG GCGCGTACAGTGCACGAATCGGTCATTGCTGAGACACAGAGACTAGGCTTTCAGCTCTTACCTGAGGAGTCTAAT GCTTCGCAGCTTGCTGGCAGCGATAGGCACATTCGGACACATGAGGTATAA |
| Transcript | >Hirsu2|4855 ATGGAAGACAGCCAGCTGAACGGGGCCGAATTCGAGCAGAAAATCAACACTTCCGGGACACTCGATCGACCCAAC GTGGAAGACAGACCCATGTCCGGGGTTATGGCTGGTGCCGATGAGGAAATCGGCGATGTGCCAGTCAATTCCAAT GAACCTACAATGTTAGGCCAAAACATCTCTGCCGGCGAAGGGCACGAAATGCAGTCAAAAGATGCTACCGAGCTG GCAGCGCGAGGACACCTGATGTCGCAGACGCATTCGATTGTTCTACCCAGCTACAGTACTTGGTTTGATATGAAC ACCATCCACGACATAGAACGTAAGGCCATGGCAGAGTTCTTTAACAATCGAAATAGAAGCAAAACTCCTGCAGTC TACAAGGACTATCGCGATTTTATGATCAACACATATCGGCTAAACCCGGCGGAATATTTAACTGTGACAGCCTGT CGACGGAATCTGGCCGGCGATGTCTGTGCCATCATGCGAGTGCATGCATTTTTGGAACAATGGGGCCTGATAAAC TATCAGGTTGATGCCGATCAACGACCATCGCATGTTGGACCTCCCTTCACCGGCCACTTCCGAATTATTTGCGAC ACCCCTCGTGGACTTCAAGCCTGGCAGCCCTCTGCCGATCCAGTCGTGTTAGAAGGGAAAAGGAACATCGAAACA GATAGGAAGGCAAATGCAACGACTACGGTCAAAAGCCATCTAAACCTCGAAGTTGGTCGTAATATATACGAGGCT AATGCAAAAACAACCACAATTACCAAGCCTGAACCCAAGACGAATGGAGACGCGCTTGCGTCAAATGGGGGGCTT AGCACGGAACCTATTGCCGCACAGCCCATGTCGAAAGTCAACTGTTATCAATGTGGGAATGACTGCACGCGCGTT TATTTCCACAGCACGCAAGCAGATCCCAACGCCAAGGCTGATCTCGACGTTTGCCCATTGTGTTTTACCGAAGGC CGATTACCCGCAAATCATACGTCAAGCATGTACGCAAAGATTGAGAACCCAGCCTACGAAGGTGGCTCGGACCGG GATGCCCCTTGGACTGATGCCGAAACACTCCGGTTACTCGAAGGACTTGAAAGATTCGATGAAGATTGGGCAGAA GTTTCAGACCACGTGGGTACCAGGACTCGCGAGGAATGCGTCTTGCGATTCCTTCAACTGGACATTGAAGAGAAA TACCTGGGTTCGGACGGCCCTGTCAATGCGCCGACGGGGCTTTCAATGCTCGGTTCTCAACAGGGCCATTTGCCA TTCAGCTCGGTGGATAATCCCGTAATGTCCGTGGTGGGCTTCCTGGCAAGCCTGGCGAACCCTTCTAGCACAGCC GCTGCAGCACGGAAATCAGCCGATCTTTTGAAACAGAGTCTACGGAAGCAGCTGCATGGCGGACGGGTCGAGGAG GGCAATGAGGCTGACCAGCAGGAACATCAAGTCGGCAGGCGCGATGGCGGAGACAAAAACGCCGAACTGGGCAAG CGTGAATCGATGGACACGGACATGCGCCAGGAGGTAATTGATGGTCAAAGGAGCGACATAATGAATAACGAGACT TCAAACACTACACTTGCGTCGGTACCACTGGCGTCCATCGGAGCTCGAGCTTCCGCGTTTGCCTCGCACGAGGAG CGTGAGATGACACGTTTGGTATCAGCGGCAGCAAATGTGACACTTCAAAAATTAGAACTGAAGCTGAAGTATTTC AATGAATTGGAAGCCTTACTGCGGGCGGAGCGAAGGGAGTTGGAGCGAGGACGGCAACAACTGTTCTTGGACCGT CTCACATTCAGGAGGAGGGTGCGGCAGGTCGAGGAGAAAGTAAGACTGTCAGGTGTCGTGGGAGGCGAGCAGGGG GCGCGTACAGTGCACGAATCGGTCATTGCTGAGACACAGAGACTAGGCTTTCAGCTCTTACCTGAGGAGTCTAAT GCTTCGCAGCTTGCTGGCAGCGATAGGCACATTCGGACACATGAGGTATAA |
| Gene | >Hirsu2|4855 ATGGAAGACAGCCAGCTGAACGGGGCCGAATTCGAGCAGAAAATCAACACTTCCGGGACACTCGATCGACCCAAC GTGGAAGACAGACCCATGTCCGGGGTTATGGCTGGTGCCGATGAGGAAATCGGCGATGTGCCAGTCAATTCCAAT GAACCTACAATGTTAGGCCAAAACATCTCTGCCGGCGAAGGGCACGAAATGCAGTCAAAAGATGCTACCGAGCTG GCAGCGCGAGGACACCTGATGTCGCAGACGCATTCGATTGTTCTACCCAGCTACAGTACTTGGTTTGATATGAAC ACCATCCACGACATAGAACGTAAGGCCATGGCAGAGTTCTTTAACAATCGAAATAGAAGCAAAACTCCTGCAGTC TACAAGGACTATCGCGATTTTATGATCAACACATATCGGCTAAACCCGGCGGAATATTTAACTGTGACAGCCTGT CGACGGAATCTGGCCGGCGATGTCTGTGCCATCATGCGAGTGCATGCATTTTTGGAACAATGGGGCCTGATAAAC TATCAGGTATGTCCAGTTGCTAAAATATGCGTCTCTCAGTCGCCACCAGCCACCTACGTCAACCCCGTATCACAT CTTGGGGGCTGAACGGCGGCCGAGAGCCCGAGCAAGGTTTGTGTCTGGTCATTCTATACTCACCAGAAACAGGTT GATGCCGATCAACGACCATCGCATGTTGGACCTCCCTTCACCGGCCACTTCCGAATTATTTGCGACACCCCTCGT GGACTTCAAGCCTGGCAGCCCTCTGCCGATCCAGTCGTGTTAGAAGGGAAAAGGAACATCGAAACAGATAGGAAG GCAAATGCAACGACTACGGTCAAAAGCCATCTAAACCTCGAAGTTGGTCGTAATATATACGAGGCTAATGCAAAA ACAACCACAATTACCAAGCCTGAACCCAAGACGAATGGAGACGCGCTTGCGTCAAATGGGGGGCTTAGCACGGAA CCTATTGCCGCACAGCCCATGTCGAAAGTCAACTGTTATCAATGTGGGAATGACTGCACGCGCGTTTATTTCCAC AGCACGCAAGCAGATCCCAACGCCAAGGCTGATCTCGACGTTTGCCCATTGTGTTTTACCGAAGGCCGATTACCC GCAAATCATACGTCAAGCATGTACGCAAAGATTGAGAACCCAGCCTACGAAGGTGGCTCGGACCGGGATGCCCCT TGGACTGATGCCGAAACACTCCGGTTACTCGAAGGACTTGAAAGATTCGATGAAGATTGGGCAGAAGTTTCAGAC CACGTGGGTACCAGGACTCGCGAGGAATGCGTCTTGCGATTCCTTCAACTGGACATTGAAGAGAAATACCTGGGT TCGGACGGCCCTGTCAATGCGCCGACGGGGCTTTCAATGCTCGGTTCTCAACAGGGCCATTTGCCATTCAGCTCG GTGGATAATCCCGTAATGTCCGTGGTGGGCTTCCTGGCAAGCCTGGCGAACCCTTCTAGCACAGCCGCTGCAGCA CGGAAATCAGCCGATCTTTTGAAACAGAGTCTACGGAAGCAGCTGCATGGCGGACGGGTCGAGGAGGGCAATGAG GCTGACCAGCAGGAACATCAAGTCGGCAGGCGCGATGGCGGAGACAAAAACGCCGAACTGGGCAAGCGTGAATCG ATGGACACGGACATGCGCCAGGAGGTAATTGATGGTCAAAGGAGCGACATAATGAATAACGAGACTTCAAACACT ACACTTGCGTCGGTACCACTGGCGTCCATCGGAGCTCGAGCTTCCGCGTTTGCCTCGCACGAGGAGCGTGAGATG ACACGTTTGGTATCAGCGGCAGCAAATGTGACACTTCAAAAATTAGAACTGAAGCTGAAGTATTTCAATGAATTG GAAGCCTTACTGCGGGCGGAGCGAAGGGAGTTGGAGCGAGGACGGCAACAACTGTTCTTGGACCGTCTCACATTC AGGAGGAGGGTGCGGCAGGTCGAGGAGAAAGTAAGACTGTCAGGTGTCGTGGGAGGCGAGCAGGGGGCGCGTACA GTGCACGAATCGGTCATTGCTGAGACACAGAGACTAGGCTTTCAGCTCTTACCTGAGGAGTCTAATGCTTCGCAG CTTGCTGGCAGCGATAGGCACATTCGGACACATGAGGTATAA |