© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4846 |
| Gene name | |
| Location | Contig_244:11038..11928 |
| Strand | - |
| Gene length (bp) | 890 |
| Transcript length (bp) | 756 |
| Coding sequence length (bp) | 756 |
| Protein length (aa) | 252 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02630 | SCO1-SenC | SCO1/SenC | 2.4E-48 | 86 | 222 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P23833|SCO1_YEAST | Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 | 30 | 246 | 2.0E-78 |
| sp|P38072|SCO2_YEAST | Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1 | 6 | 251 | 1.0E-73 |
| sp|O42899|SCO1_SCHPO | Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 | 6 | 239 | 1.0E-72 |
| sp|Q8VYP0|SCO11_ARATH | Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 | 40 | 246 | 4.0E-51 |
| sp|Q5SUC9|SCO1_MOUSE | Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=1 SV=1 | 40 | 245 | 3.0E-46 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P23833|SCO1_YEAST | Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1 | 30 | 246 | 2.0E-78 |
| sp|P38072|SCO2_YEAST | Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1 | 6 | 251 | 1.0E-73 |
| sp|O42899|SCO1_SCHPO | Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sco1 PE=3 SV=1 | 6 | 239 | 1.0E-72 |
| sp|Q8VYP0|SCO11_ARATH | Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=HCC1 PE=2 SV=1 | 40 | 246 | 4.0E-51 |
| sp|Q5SUC9|SCO1_MOUSE | Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=1 SV=1 | 40 | 245 | 3.0E-46 |
| sp|A1A4J8|SCO1_BOVIN | Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1 | 40 | 244 | 2.0E-44 |
| sp|Q92H76|SCO22_RICCN | SCO2-like protein RC0895 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0895 PE=3 SV=1 | 84 | 239 | 2.0E-44 |
| sp|Q8VCL2|SCO2_MOUSE | Protein SCO2 homolog, mitochondrial OS=Mus musculus GN=Sco2 PE=1 SV=1 | 55 | 243 | 9.0E-44 |
| sp|Q1RIN4|SCO22_RICBR | SCO2-like protein RBE_0699 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0699 PE=3 SV=1 | 82 | 239 | 4.0E-43 |
| sp|Q4UKW2|SCO22_RICFE | SCO2-like protein RF_0960 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0960 PE=3 SV=1 | 84 | 239 | 1.0E-42 |
| sp|O75880|SCO1_HUMAN | Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1 SV=1 | 40 | 244 | 3.0E-42 |
| sp|Q9ZCW7|SCO22_RICPR | SCO2-like protein RP587 OS=Rickettsia prowazekii (strain Madrid E) GN=RP587 PE=3 SV=1 | 82 | 224 | 1.0E-41 |
| sp|O43819|SCO2_HUMAN | Protein SCO2 homolog, mitochondrial OS=Homo sapiens GN=SCO2 PE=1 SV=3 | 64 | 243 | 7.0E-41 |
| sp|Q5RH02|SCO2_DANRE | Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3 SV=1 | 48 | 244 | 2.0E-40 |
| sp|A6H784|SCO2_BOVIN | Protein SCO2 homolog, mitochondrial OS=Bos taurus GN=SCO2 PE=2 SV=1 | 55 | 243 | 2.0E-40 |
| sp|Q8LAL0|SCO12_ARATH | Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana GN=HCC2 PE=2 SV=1 | 55 | 243 | 6.0E-36 |
| sp|Q68WF1|SCO22_RICTY | SCO2-like protein RT0576 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=RT0576 PE=3 SV=2 | 84 | 224 | 9.0E-33 |
| sp|P47206|SCOP_PSEST | Putative copper-binding protein OS=Pseudomonas stutzeri GN=scoP PE=3 SV=2 | 68 | 222 | 6.0E-28 |
| sp|Q52720|SENC_RHOCB | Protein SenC OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=senC PE=3 SV=2 | 72 | 239 | 1.0E-25 |
| sp|Q92JM5|SCO21_RICCN | SCO2-like protein RC0042 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=RC0042 PE=3 SV=1 | 83 | 224 | 1.0E-17 |
| sp|Q9ZEB4|SCO21_RICPR | SCO2-like protein RP031 OS=Rickettsia prowazekii (strain Madrid E) GN=RP031 PE=3 SV=1 | 51 | 220 | 8.0E-17 |
| sp|Q4UNH4|SCO21_RICFE | SCO2-like protein RF_0043 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0043 PE=3 SV=1 | 74 | 224 | 2.0E-16 |
| sp|Q1RKK4|SCO21_RICBR | SCO2-like protein RBE_0029 OS=Rickettsia bellii (strain RML369-C) GN=RBE_0029 PE=3 SV=1 | 88 | 224 | 3.0E-16 |
| sp|P54178|SCO1_BACSU | SCO1 protein homolog OS=Bacillus subtilis (strain 168) GN=ypmQ PE=1 SV=2 | 89 | 232 | 3.0E-06 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 37 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 42 | 61 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4846 MQPKQLRPRLPQAPPTRQPITQRRTKYKTVEEAKSRHSTGPFSWKAGILFVATCAGLVWYFEYEKGRMHRKRIAE AAKGVGRPKVGGEFELVDQNGKPFTNTMMKGKHSLVYFGFTRCPDICPEELDKMARMVDMVESKAPGSLLPIFVT CDPERDDPKALKSYLAEFHPAFIGLTGTYDQIKDLCKKYRVYFSTPKNVKAGQDYLVDHSIYFYLMDPEGDFVEA LGRQHSPDQGAQLILDHMKDWPGRKE* |
| Coding | >Hirsu2|4846 ATGCAGCCTAAGCAGCTTCGTCCGAGGCTCCCCCAAGCGCCGCCGACAAGACAACCGATCACGCAAAGACGAACC AAGTACAAGACTGTGGAGGAGGCAAAGAGCCGGCACAGCACGGGGCCATTCTCGTGGAAAGCCGGCATACTTTTC GTCGCGACCTGCGCTGGGCTGGTGTGGTATTTCGAATACGAGAAGGGGCGCATGCACAGGAAGAGGATAGCAGAG GCGGCCAAGGGCGTTGGGCGGCCCAAGGTCGGAGGCGAGTTTGAGCTCGTGGACCAGAATGGCAAGCCGTTCACA AACACAATGATGAAGGGCAAACACTCTCTTGTCTACTTCGGCTTCACGCGCTGTCCCGACATCTGCCCCGAAGAG CTCGACAAGATGGCCCGGATGGTGGACATGGTGGAAAGCAAAGCCCCCGGCTCCCTGCTACCGATATTCGTGACG TGCGATCCCGAACGCGATGATCCCAAGGCTCTCAAGAGCTACCTCGCCGAGTTCCACCCGGCCTTTATCGGCCTG ACGGGGACCTACGACCAGATCAAAGACCTGTGCAAGAAGTACAGGGTCTACTTCAGCACACCCAAGAACGTCAAG GCCGGGCAGGACTACCTGGTAGACCACAGCATCTACTTCTATCTCATGGATCCCGAGGGCGATTTTGTGGAGGCG CTGGGTCGGCAACATTCGCCGGACCAAGGCGCGCAGCTGATCCTGGACCACATGAAGGATTGGCCGGGTAGGAAA GAATGA |
| Transcript | >Hirsu2|4846 ATGCAGCCTAAGCAGCTTCGTCCGAGGCTCCCCCAAGCGCCGCCGACAAGACAACCGATCACGCAAAGACGAACC AAGTACAAGACTGTGGAGGAGGCAAAGAGCCGGCACAGCACGGGGCCATTCTCGTGGAAAGCCGGCATACTTTTC GTCGCGACCTGCGCTGGGCTGGTGTGGTATTTCGAATACGAGAAGGGGCGCATGCACAGGAAGAGGATAGCAGAG GCGGCCAAGGGCGTTGGGCGGCCCAAGGTCGGAGGCGAGTTTGAGCTCGTGGACCAGAATGGCAAGCCGTTCACA AACACAATGATGAAGGGCAAACACTCTCTTGTCTACTTCGGCTTCACGCGCTGTCCCGACATCTGCCCCGAAGAG CTCGACAAGATGGCCCGGATGGTGGACATGGTGGAAAGCAAAGCCCCCGGCTCCCTGCTACCGATATTCGTGACG TGCGATCCCGAACGCGATGATCCCAAGGCTCTCAAGAGCTACCTCGCCGAGTTCCACCCGGCCTTTATCGGCCTG ACGGGGACCTACGACCAGATCAAAGACCTGTGCAAGAAGTACAGGGTCTACTTCAGCACACCCAAGAACGTCAAG GCCGGGCAGGACTACCTGGTAGACCACAGCATCTACTTCTATCTCATGGATCCCGAGGGCGATTTTGTGGAGGCG CTGGGTCGGCAACATTCGCCGGACCAAGGCGCGCAGCTGATCCTGGACCACATGAAGGATTGGCCGGGTAGGAAA GAATGA |
| Gene | >Hirsu2|4846 ATGCAGCCTAAGCAGCTTCGTCCGAGGCTCCCCCAAGCGCCGCCGACAAGACAACCGATCACGCAAAGACGAACC AAGTACAAGACTGTGGAGGAGGCAAAGAGCCGGCACAGCACGGGGGTATGCGTCTCCGCGCGATGCGGCAAAGCC CACGTTGGGGGCAGGACGAGGAGGCTGACCCGCTGCTTCTACGTAGCCATTCTCGTGGAAAGCCGGCATACTTTT CGTCGCGACCTGCGCTGGGCTGGTGTGGTATTTCGAATACGAGAAGGGGCGCATGCACAGGAAGAGGATAGCAGA GGCGGCCAAGGGCGTTGGGCGGCCCAAGGTCGGAGGCGAGTTTGAGCTCGTGGACCAGAATGGCAAGCCGTTCAC AAACACAATGATGAAGGGCAAACACTCTCTTGTGCGTTTTGCGCCTGTCCACCGGTCGCTCGGGACTTCAGGCTG ACTGGCGATTTCAGGTCTACTTCGGCTTCACGCGCTGTCCCGACATCTGCCCCGAAGAGCTCGACAAGATGGCCC GGATGGTGGACATGGTGGAAAGCAAAGCCCCCGGCTCCCTGCTACCGATATTCGTGACGTGCGATCCCGAACGCG ATGATCCCAAGGCTCTCAAGAGCTACCTCGCCGAGTTCCACCCGGCCTTTATCGGCCTGACGGGGACCTACGACC AGATCAAAGACCTGTGCAAGAAGTACAGGGTCTACTTCAGCACACCCAAGAACGTCAAGGCCGGGCAGGACTACC TGGTAGACCACAGCATCTACTTCTATCTCATGGATCCCGAGGGCGATTTTGTGGAGGCGCTGGGTCGGCAACATT CGCCGGACCAAGGCGCGCAGCTGATCCTGGACCACATGAAGGATTGGCCGGGTAGGAAAGAATGA |