© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4840 |
| Gene name | |
| Location | Contig_2439:809..1798 |
| Strand | + |
| Gene length (bp) | 989 |
| Transcript length (bp) | 882 |
| Coding sequence length (bp) | 882 |
| Protein length (aa) | 294 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide | 0.1303 | 0.1607 | 0.2542 | 0.1043 | 0.127 | 0.0162 | 0.8402 | 0.4998 | 0.3251 | 0.0246 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 22 | 0.828886 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 240 | 262 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 5306 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4840 MMLAPPLLLGAAPLLLRAAAAAAQQQQLLHADGLPSYHYGAPIHVECMNRSSETGEHLETAEHELQWIPFPACAE TGKPLEFEYGVEGEVNCTIAAVSDPLFHLLEFYVHSDAPLSCRLPARPPAQVEVVGERPPAPGFVPLVFALAGTL QLSHLHVSAHLNVLLHSTPKHHARPHDSGVLDSAIAYSTSPLGAGAHRLIVGAPLPLALSVRWFPTPALPKTEGH VEWQGLGGHVYASTVFYSLASFVAGLLLAAMYLLGVVLPRRLRGRSMGGATPLGHGLGNGWGYAKRKD* |
| Coding | >Hirsu2|4840 ATGATGTTGGCGCCCCCGCTGCTGCTGGGCGCGGCGCCGCTGCTGCTCCGGGCGGCGGCGGCGGCGGCGCAGCAG CAGCAGCTGTTGCACGCGGACGGCCTGCCGTCGTATCACTACGGGGCGCCGATCCACGTCGAGTGCATGAACCGC AGCTCGGAGACGGGCGAGCATCTCGAGACGGCGGAGCACGAGCTGCAGTGGATCCCGTTCCCGGCGTGCGCCGAG ACGGGCAAGCCGCTCGAGTTCGAATACGGGGTGGAGGGCGAGGTCAACTGCACGATCGCGGCCGTGTCGGACCCG CTCTTCCACCTGCTCGAGTTCTACGTGCACAGCGACGCGCCGCTGTCGTGCCGGCTGCCGGCGCGGCCGCCGGCG CAGGTCGAGGTGGTGGGCGAGCGGCCGCCGGCGCCGGGCTTCGTCCCGCTCGTCTTCGCCCTGGCCGGCACGCTG CAGCTGAGCCACCTGCACGTCAGCGCCCACCTCAACGTGCTGCTGCACAGCACGCCCAAGCACCACGCGCGCCCG CACGACAGCGGCGTGCTCGACTCGGCCATCGCCTACAGCACCAGCCCGCTGGGCGCCGGCGCCCACCGCCTCATC GTCGGCGCGCCCCTGCCGCTCGCCCTCTCCGTCCGCTGGTTCCCGACCCCGGCCCTGCCCAAGACGGAGGGCCAC GTCGAGTGGCAGGGCCTCGGCGGCCACGTCTACGCCAGCACCGTCTTCTACAGCCTCGCCTCCTTCGTCGCCGGC CTGCTGCTGGCCGCCATGTACCTGCTCGGCGTCGTCCTGCCCCGCCGCCTGCGCGGCCGCTCCATGGGCGGCGCC ACCCCGCTGGGCCACGGCCTCGGCAACGGCTGGGGCTATGCCAAGCGCAAGGATTGA |
| Transcript | >Hirsu2|4840 ATGATGTTGGCGCCCCCGCTGCTGCTGGGCGCGGCGCCGCTGCTGCTCCGGGCGGCGGCGGCGGCGGCGCAGCAG CAGCAGCTGTTGCACGCGGACGGCCTGCCGTCGTATCACTACGGGGCGCCGATCCACGTCGAGTGCATGAACCGC AGCTCGGAGACGGGCGAGCATCTCGAGACGGCGGAGCACGAGCTGCAGTGGATCCCGTTCCCGGCGTGCGCCGAG ACGGGCAAGCCGCTCGAGTTCGAATACGGGGTGGAGGGCGAGGTCAACTGCACGATCGCGGCCGTGTCGGACCCG CTCTTCCACCTGCTCGAGTTCTACGTGCACAGCGACGCGCCGCTGTCGTGCCGGCTGCCGGCGCGGCCGCCGGCG CAGGTCGAGGTGGTGGGCGAGCGGCCGCCGGCGCCGGGCTTCGTCCCGCTCGTCTTCGCCCTGGCCGGCACGCTG CAGCTGAGCCACCTGCACGTCAGCGCCCACCTCAACGTGCTGCTGCACAGCACGCCCAAGCACCACGCGCGCCCG CACGACAGCGGCGTGCTCGACTCGGCCATCGCCTACAGCACCAGCCCGCTGGGCGCCGGCGCCCACCGCCTCATC GTCGGCGCGCCCCTGCCGCTCGCCCTCTCCGTCCGCTGGTTCCCGACCCCGGCCCTGCCCAAGACGGAGGGCCAC GTCGAGTGGCAGGGCCTCGGCGGCCACGTCTACGCCAGCACCGTCTTCTACAGCCTCGCCTCCTTCGTCGCCGGC CTGCTGCTGGCCGCCATGTACCTGCTCGGCGTCGTCCTGCCCCGCCGCCTGCGCGGCCGCTCCATGGGCGGCGCC ACCCCGCTGGGCCACGGCCTCGGCAACGGCTGGGGCTATGCCAAGCGCAAGGATTGA |
| Gene | >Hirsu2|4840 ATGATGTTGGCGCCCCCGCTGCTGCTGGGCGCGGCGCCGCTGCTGCTCCGGGCGGCGGCGGCGGCGGCGCAGCAG CAGCAGCTGTTGCACGCGGACGGCCTGCCGTCGTATCACTACGGGGCGCCGATCCACGTCGAGTGCATGAACCGC AGCTCGTGAGTTGTCTTTTCTCCCTTCCTTCCCCTTGTCCCTTCTCGTTGTCGCCCCTCCTCTCCTTGTCCCGCG CGGCGCAGAGGGCACGAGGCTGACGGACGGCGGCCAGGGAGACGGGCGAGCATCTCGAGACGGCGGAGCACGAGC TGCAGTGGATCCCGTTCCCGGCGTGCGCCGAGACGGGCAAGCCGCTCGAGTTCGAATACGGGGTGGAGGGCGAGG TCAACTGCACGATCGCGGCCGTGTCGGACCCGCTCTTCCACCTGCTCGAGTTCTACGTGCACAGCGACGCGCCGC TGTCGTGCCGGCTGCCGGCGCGGCCGCCGGCGCAGGTCGAGGTGGTGGGCGAGCGGCCGCCGGCGCCGGGCTTCG TCCCGCTCGTCTTCGCCCTGGCCGGCACGCTGCAGCTGAGCCACCTGCACGTCAGCGCCCACCTCAACGTGCTGC TGCACAGCACGCCCAAGCACCACGCGCGCCCGCACGACAGCGGCGTGCTCGACTCGGCCATCGCCTACAGCACCA GCCCGCTGGGCGCCGGCGCCCACCGCCTCATCGTCGGCGCGCCCCTGCCGCTCGCCCTCTCCGTCCGCTGGTTCC CGACCCCGGCCCTGCCCAAGACGGAGGGCCACGTCGAGTGGCAGGGCCTCGGCGGCCACGTCTACGCCAGCACCG TCTTCTACAGCCTCGCCTCCTTCGTCGCCGGCCTGCTGCTGGCCGCCATGTACCTGCTCGGCGTCGTCCTGCCCC GCCGCCTGCGCGGCCGCTCCATGGGCGGCGCCACCCCGCTGGGCCACGGCCTCGGCAACGGCTGGGGCTATGCCA AGCGCAAGGATTGA |