Fungal Genomics

at Utrecht University

General Properties

Protein ID	Hirsu2\|4829
Gene name
Location	Contig_2431:45..565
Strand	-
Gene length (bp)	520
Transcript length (bp)	483
Coding sequence length (bp)	483
Protein length (aa)	161

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00221	Lyase_aromatic	Aromatic amino acid lyase	2.1E-14	37	119

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q96V77\|PALY_USTMA	Phenylalanine ammonia-lyase OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PAL1 PE=3 SV=2	22	96	4.0E-12
sp\|P11544\|PALY_RHOTO	Phenylalanine/tyrosine ammonia-lyase OS=Rhodosporidium toruloides GN=PAL PE=1 SV=2	28	118	6.0E-11
sp\|P10248\|PALY_RHOMI	Phenylalanine ammonia-lyase OS=Rhodotorula mucilaginosa GN=PAL PE=3 SV=2	30	119	1.0E-10
sp\|O93967\|PALY_AMAMU	Phenylalanine ammonia-lyase OS=Amanita muscaria GN=PAL PE=2 SV=1	5	115	6.0E-08
sp\|P45725\|PAL3_ARATH	Phenylalanine ammonia-lyase 3 OS=Arabidopsis thaliana GN=PAL3 PE=1 SV=3	15	121	8.0E-07

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 12	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2\|4829 MTGPKSSAHTSATLQIWRRLRDLRAKKASIVLDGDSLDIASVVAVARHGVKPVISSDPDLARRLDLSVDALAAYI ARDWVVYGVNTGFGGSADARTDHLVDLQVHLLQHTQSAIVTSADRDPAANSERQPGHVMPPETCAATAPSASPSC AASSTCCTTT*
Coding	>Hirsu2\|4829 ATGACGGGGCCCAAGTCGTCGGCGCACACCAGCGCAACGCTCCAGATCTGGAGGCGGCTGCGGGACCTCCGGGCC AAGAAGGCCTCCATCGTCCTCGACGGCGACAGCCTCGACATCGCCTCCGTCGTCGCCGTCGCCCGCCATGGCGTC AAGCCCGTCATCAGCTCCGACCCGGACCTGGCCCGCCGCCTCGACCTCAGCGTCGACGCCCTGGCCGCCTACATC GCCCGCGACTGGGTCGTCTACGGCGTCAACACCGGCTTCGGCGGCAGCGCCGACGCCCGCACCGACCACCTCGTC GACCTCCAGGTCCACCTGCTGCAGCACACCCAGAGCGCCATCGTCACCAGCGCCGACCGCGACCCGGCCGCCAAC TCGGAGCGCCAGCCCGGCCACGTCATGCCGCCCGAAACCTGCGCGGCCACAGCGCCGTCCGCCTCGCCGTCCTGC GCCGCCTCGTCGACATGCTGCACCACGACCTGA
Transcript	>Hirsu2\|4829 ATGACGGGGCCCAAGTCGTCGGCGCACACCAGCGCAACGCTCCAGATCTGGAGGCGGCTGCGGGACCTCCGGGCC AAGAAGGCCTCCATCGTCCTCGACGGCGACAGCCTCGACATCGCCTCCGTCGTCGCCGTCGCCCGCCATGGCGTC AAGCCCGTCATCAGCTCCGACCCGGACCTGGCCCGCCGCCTCGACCTCAGCGTCGACGCCCTGGCCGCCTACATC GCCCGCGACTGGGTCGTCTACGGCGTCAACACCGGCTTCGGCGGCAGCGCCGACGCCCGCACCGACCACCTCGTC GACCTCCAGGTCCACCTGCTGCAGCACACCCAGAGCGCCATCGTCACCAGCGCCGACCGCGACCCGGCCGCCAAC TCGGAGCGCCAGCCCGGCCACGTCATGCCGCCCGAAACCTGCGCGGCCACAGCGCCGTCCGCCTCGCCGTCCTGC GCCGCCTCGTCGACATGCTGCACCACGACCTGA
Gene	>Hirsu2\|4829 ATGACGGGGCCCAAGTCGTCGGCGCACACCAGCGCAACGCTCCAGATCTGGAGGCGGCTGCGGGACCTCCGGGCC AAGAAGGCCTCCATCGTCCTCGACGGCGACAGCCTCGACATCGCCTCCGTCGTCGCCGTCGCCCGCCATGGCGTC AAGCCCGTCATCAGCTCCGACCCGGACCTGGCCCGCCGCCTCGACCTCAGCGTCGACGCCCTGGCCGCCTACATC GCCCGCGACTGGGTCGTCTACGGCGTCAACACCGGCTTCGGCGGCAGCGCCGACGCCCGCACCGACCACCTCGTC GACCTCCAGGTCCACCTGCTGCAGCACACCCAGAGCGCCATCGTCACCAGCGCCGACCGCGACCCGGCCGCCAAC TCGGAGCGCCAGCCCGGCCACGTCATGCCGCCCGAGTGGGTGCGCGGCGCCATCGTCGCCCGCGCCAACCAGAAC CTGCGCGGCCACAGCGCCGTCCGCCTCGCCGTCCTGCGCCGCCTCGTCGACATGCTGCACCACGACCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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