© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4826 |
| Gene name | |
| Location | Contig_243:22818..23902 |
| Strand | - |
| Gene length (bp) | 1084 |
| Transcript length (bp) | 804 |
| Coding sequence length (bp) | 804 |
| Protein length (aa) | 268 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12351 | Fig1 | Ca2+ regulator and membrane fusion protein Fig1 | 1.5E-58 | 75 | 256 |
| PF06687 | SUR7 | SUR7/PalI family | 2.2E-07 | 20 | 248 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005886 | plasma membrane | Yes |
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 140 | 162 | 22 |
| 3 | 182 | 204 | 22 |
| 4 | 235 | 257 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4826 MPQFQVGWARFIPFLGYHHVLMILIAVAIILLSLLLAGCSSSSPLIPDIFLLSLYYQHYEAVPDTAQVDYNLHTA MENIAGAASLQARVGYFGICVNPDGGSWLCSNNATSLAKEVSVDQDPLNLIWLAAQFKDMIVFPYLIIIAIIFAF LCFILLATFPGWHEEEDSEGSEREVKPFPSRPVSQVALAIIFIASIFVLVSVLWQHTASVAASVIAQDFGNGAVR SGVGTSAMVMGWFSFTLLIIVTIGLLVMILSIRVLGQLMRDN* |
| Coding | >Hirsu2|4826 ATGCCTCAGTTCCAGGTCGGCTGGGCCCGGTTCATACCGTTCCTGGGCTACCACCATGTCCTGATGATCCTGATA GCGGTGGCCATCATATTATTATCACTGCTCCTGGCCGGCTGCTCGTCGTCGTCGCCGCTGATCCCCGACATCTTC CTCCTCTCGCTGTACTACCAGCACTACGAGGCCGTGCCGGACACGGCGCAGGTCGACTACAACCTGCACACGGCC ATGGAGAACATCGCGGGCGCGGCCAGCCTGCAGGCCCGCGTCGGCTACTTCGGCATCTGCGTCAACCCGGACGGC GGCTCGTGGCTGTGTAGCAACAACGCGACCTCGCTGGCCAAGGAGGTCTCGGTCGACCAGGACCCGCTCAACCTG ATCTGGCTGGCGGCCCAGTTCAAGGACATGATTGTCTTTCCGTACCTCATCATCATCGCCATCATCTTCGCCTTC CTCTGCTTCATCCTGCTCGCCACCTTCCCGGGCTGGCACGAGGAGGAGGACTCGGAGGGCTCGGAGCGCGAAGTG AAGCCGTTCCCGTCGCGGCCCGTGTCGCAGGTGGCGCTGGCCATCATCTTCATCGCCTCCATCTTCGTGTTGGTG TCGGTGCTGTGGCAGCACACGGCCTCGGTCGCGGCCTCGGTCATCGCCCAGGACTTCGGCAACGGCGCCGTCCGC AGCGGCGTCGGCACCAGCGCCATGGTCATGGGCTGGTTCTCCTTCACCCTGCTCATCATCGTCACCATCGGCCTG CTCGTCATGATCCTCAGCATCCGCGTCCTCGGCCAGCTGATGCGCGACAACTGA |
| Transcript | >Hirsu2|4826 ATGCCTCAGTTCCAGGTCGGCTGGGCCCGGTTCATACCGTTCCTGGGCTACCACCATGTCCTGATGATCCTGATA GCGGTGGCCATCATATTATTATCACTGCTCCTGGCCGGCTGCTCGTCGTCGTCGCCGCTGATCCCCGACATCTTC CTCCTCTCGCTGTACTACCAGCACTACGAGGCCGTGCCGGACACGGCGCAGGTCGACTACAACCTGCACACGGCC ATGGAGAACATCGCGGGCGCGGCCAGCCTGCAGGCCCGCGTCGGCTACTTCGGCATCTGCGTCAACCCGGACGGC GGCTCGTGGCTGTGTAGCAACAACGCGACCTCGCTGGCCAAGGAGGTCTCGGTCGACCAGGACCCGCTCAACCTG ATCTGGCTGGCGGCCCAGTTCAAGGACATGATTGTCTTTCCGTACCTCATCATCATCGCCATCATCTTCGCCTTC CTCTGCTTCATCCTGCTCGCCACCTTCCCGGGCTGGCACGAGGAGGAGGACTCGGAGGGCTCGGAGCGCGAAGTG AAGCCGTTCCCGTCGCGGCCCGTGTCGCAGGTGGCGCTGGCCATCATCTTCATCGCCTCCATCTTCGTGTTGGTG TCGGTGCTGTGGCAGCACACGGCCTCGGTCGCGGCCTCGGTCATCGCCCAGGACTTCGGCAACGGCGCCGTCCGC AGCGGCGTCGGCACCAGCGCCATGGTCATGGGCTGGTTCTCCTTCACCCTGCTCATCATCGTCACCATCGGCCTG CTCGTCATGATCCTCAGCATCCGCGTCCTCGGCCAGCTGATGCGCGACAACTGA |
| Gene | >Hirsu2|4826 ATGCCTCAGTTCCAGGTCGGCTGGGCCCGTGAGTCTCTTCCTCTTCTTGAGCGGCTGGAATGCGCCGACCTGGCG GCCACGATGGCGACGAGGCGGGAGAAGAACTGACGCCGCGTCCTTCTAGGGTTCATACCGTTCCTGGGCTACCAC CATGTCCTGATGATCCTGATAGCGGTGGCCATCATATTATTATGTACGTTCCCTCCCTCTCTCCGCGTGGCCCTG GGAGCACTGTGAAGCTGACCGAGCGAACCCCCCCCCCCCCGAAAAAGCACTGCTCCTGGCCGGCTGCTCGTCGTC GTCGCCGCTGATCCCCGACATCTTCCTCCTCTCGCTGTACTACCAGCACTACGAGGCCGTGCCGGACACGGCGCA GGTCGACTACAACCTGCACACGGCCATGGAGAACATCGCGGGCGCGGCCAGCCTGCAGGCCCGCGTCGGCTACTT CGGCATCTGCGTCAACCCGGACGGCGGCTCGTGGCTGTGTAGCAACAACGCGACCTCGCTGGCCAAGGAGGTCTC GGTCGACCAGGACCCGCTCAACCTGATCTGGCTGGCGGCCCAGTTCAAGGACATGATTGTCTTTCCGTACCTCAT GTGCGTTTTTCCCCGTCCCTCACTCTCTCTGTCTCTTTGCCCATCTGGTGCATGAGTTGTGGATATTTGACAAAA ACGTGCCTCGACTGACGCCCAAACGAACAGCATCATCGCCATCATCTTCGCCTTCCTCTGCTTCATCCTGCTCGC CACCTTCCCGGGCTGGCACGAGGAGGAGGACTCGGAGGGCTCGGAGCGCGAAGTGAAGCCGTTCCCGTCGCGGCC CGTGTCGCAGGTGGCGCTGGCCATCATCTTCATCGCCTCCATCTTCGTGTTGGTGTCGGTGCTGTGGCAGCACAC GGCCTCGGTCGCGGCCTCGGTCATCGCCCAGGACTTCGGCAACGGCGCCGTCCGCAGCGGCGTCGGCACCAGCGC CATGGTCATGGGCTGGTTCTCCTTCACCCTGCTCATCATCGTCACCATCGGCCTGCTCGTCATGATCCTCAGCAT CCGCGTCCTCGGCCAGCTGATGCGCGACAACTGA |