Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4813
Gene name
LocationContig_2426:117..771
Strand+
Gene length (bp)654
Transcript length (bp)654
Coding sequence length (bp)654
Protein length (aa) 218

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02278 Lyase_8 Polysaccharide lyase family 8, super-sandwich domain 2.1E-23 2 124
PF02884 Lyase_8_C Polysaccharide lyase family 8, C-terminal beta-sandwich domain 7.4E-11 137 194

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9AQS0|XANLY_BACGL Xanthan lyase OS=Bacillus sp. (strain GL1) GN=xly PE=1 SV=1 2 207 4.0E-17
sp|Q59288|CSLA_PEDHD Chondroitinase-AC OS=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) GN=cslA PE=1 SV=1 2 187 4.0E-15
sp|P0CZ01|HYSA_PROAC Hyaluronate lyase OS=Propionibacterium acnes (strain KPA171202 / DSM 16379) GN=PPA0380 PE=3 SV=1 11 201 6.0E-13
sp|P0CZ00|HYSA_PROAA Hyaluronate lyase OS=Propionibacterium acnes PE=1 SV=1 11 201 8.0E-11

GO

GO Term Description Terminal node
GO:0016829 lyase activity Yes
GO:0005576 extracellular region Yes
GO:0003674 molecular_function No
GO:0003824 catalytic activity No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 15 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4813
MIVCLGAGLTSTDGHVVETTYDSRNLGAAGSQRLIVDGNVQPAALNTTGRFKEAKWARLDGFGGYLFLDGREVIA
RREERTGSWRDVDDAGAADPVTRRYLTLYRSHGTNPKDSGYAYAVMPGAKTGEVRASVGKVKVLANTPERQAVRI
GDVFAANFFAPGSTGGLRVSAPCSVLIRGASIYVADPGHQASKVDVTWQGNTRTVNLAGMAGVTVKL*
Coding >Hirsu2|4813
ATGATCGTCTGCCTGGGCGCCGGCCTGACCAGCACCGACGGCCACGTGGTCGAGACGACGTACGACAGCCGCAAC
CTCGGCGCGGCCGGCAGCCAGCGGCTCATCGTCGACGGCAACGTCCAGCCGGCTGCGCTCAACACCACCGGCCGG
TTCAAGGAGGCCAAGTGGGCGCGGCTCGACGGCTTCGGCGGCTACCTGTTCCTCGACGGCCGCGAGGTCATCGCC
CGCCGCGAGGAGCGCACCGGGAGCTGGCGGGACGTCGACGACGCCGGCGCCGCCGACCCCGTCACCCGCCGCTAC
CTGACCCTCTATCGATCCCACGGGACCAATCCGAAGGACAGCGGTTACGCGTACGCCGTCATGCCCGGCGCCAAG
ACGGGGGAGGTCCGGGCATCCGTCGGCAAGGTCAAGGTGCTGGCCAACACTCCCGAGCGGCAGGCCGTCCGGATC
GGCGACGTCTTCGCCGCCAACTTCTTCGCGCCCGGCAGCACCGGAGGACTCCGGGTGTCGGCGCCGTGCAGCGTC
CTGATACGGGGAGCGAGCATCTACGTCGCCGACCCCGGGCATCAGGCGAGCAAGGTCGACGTCACCTGGCAGGGC
AATACCCGGACGGTGAACCTCGCCGGCATGGCCGGTGTCACCGTCAAGCTCTAG
Transcript >Hirsu2|4813
ATGATCGTCTGCCTGGGCGCCGGCCTGACCAGCACCGACGGCCACGTGGTCGAGACGACGTACGACAGCCGCAAC
CTCGGCGCGGCCGGCAGCCAGCGGCTCATCGTCGACGGCAACGTCCAGCCGGCTGCGCTCAACACCACCGGCCGG
TTCAAGGAGGCCAAGTGGGCGCGGCTCGACGGCTTCGGCGGCTACCTGTTCCTCGACGGCCGCGAGGTCATCGCC
CGCCGCGAGGAGCGCACCGGGAGCTGGCGGGACGTCGACGACGCCGGCGCCGCCGACCCCGTCACCCGCCGCTAC
CTGACCCTCTATCGATCCCACGGGACCAATCCGAAGGACAGCGGTTACGCGTACGCCGTCATGCCCGGCGCCAAG
ACGGGGGAGGTCCGGGCATCCGTCGGCAAGGTCAAGGTGCTGGCCAACACTCCCGAGCGGCAGGCCGTCCGGATC
GGCGACGTCTTCGCCGCCAACTTCTTCGCGCCCGGCAGCACCGGAGGACTCCGGGTGTCGGCGCCGTGCAGCGTC
CTGATACGGGGAGCGAGCATCTACGTCGCCGACCCCGGGCATCAGGCGAGCAAGGTCGACGTCACCTGGCAGGGC
AATACCCGGACGGTGAACCTCGCCGGCATGGCCGGTGTCACCGTCAAGCTCTAG
Gene >Hirsu2|4813
ATGATCGTCTGCCTGGGCGCCGGCCTGACCAGCACCGACGGCCACGTGGTCGAGACGACGTACGACAGCCGCAAC
CTCGGCGCGGCCGGCAGCCAGCGGCTCATCGTCGACGGCAACGTCCAGCCGGCTGCGCTCAACACCACCGGCCGG
TTCAAGGAGGCCAAGTGGGCGCGGCTCGACGGCTTCGGCGGCTACCTGTTCCTCGACGGCCGCGAGGTCATCGCC
CGCCGCGAGGAGCGCACCGGGAGCTGGCGGGACGTCGACGACGCCGGCGCCGCCGACCCCGTCACCCGCCGCTAC
CTGACCCTCTATCGATCCCACGGGACCAATCCGAAGGACAGCGGTTACGCGTACGCCGTCATGCCCGGCGCCAAG
ACGGGGGAGGTCCGGGCATCCGTCGGCAAGGTCAAGGTGCTGGCCAACACTCCCGAGCGGCAGGCCGTCCGGATC
GGCGACGTCTTCGCCGCCAACTTCTTCGCGCCCGGCAGCACCGGAGGACTCCGGGTGTCGGCGCCGTGCAGCGTC
CTGATACGGGGAGCGAGCATCTACGTCGCCGACCCCGGGCATCAGGCGAGCAAGGTCGACGTCACCTGGCAGGGC
AATACCCGGACGGTGAACCTCGCCGGCATGGCCGGTGTCACCGTCAAGCTCTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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