© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|4813 |
| Gene name | |
| Location | Contig_2426:117..771 |
| Strand | + |
| Gene length (bp) | 654 |
| Transcript length (bp) | 654 |
| Coding sequence length (bp) | 654 |
| Protein length (aa) | 218 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02278 | Lyase_8 | Polysaccharide lyase family 8, super-sandwich domain | 2.1E-23 | 2 | 124 |
| PF02884 | Lyase_8_C | Polysaccharide lyase family 8, C-terminal beta-sandwich domain | 7.4E-11 | 137 | 194 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9AQS0|XANLY_BACGL | Xanthan lyase OS=Bacillus sp. (strain GL1) GN=xly PE=1 SV=1 | 2 | 207 | 4.0E-17 |
| sp|Q59288|CSLA_PEDHD | Chondroitinase-AC OS=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) GN=cslA PE=1 SV=1 | 2 | 187 | 4.0E-15 |
| sp|P0CZ01|HYSA_PROAC | Hyaluronate lyase OS=Propionibacterium acnes (strain KPA171202 / DSM 16379) GN=PPA0380 PE=3 SV=1 | 11 | 201 | 6.0E-13 |
| sp|P0CZ00|HYSA_PROAA | Hyaluronate lyase OS=Propionibacterium acnes PE=1 SV=1 | 11 | 201 | 8.0E-11 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016829 | lyase activity | Yes |
| GO:0005576 | extracellular region | Yes |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 15 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4813 MIVCLGAGLTSTDGHVVETTYDSRNLGAAGSQRLIVDGNVQPAALNTTGRFKEAKWARLDGFGGYLFLDGREVIA RREERTGSWRDVDDAGAADPVTRRYLTLYRSHGTNPKDSGYAYAVMPGAKTGEVRASVGKVKVLANTPERQAVRI GDVFAANFFAPGSTGGLRVSAPCSVLIRGASIYVADPGHQASKVDVTWQGNTRTVNLAGMAGVTVKL* |
| Coding | >Hirsu2|4813 ATGATCGTCTGCCTGGGCGCCGGCCTGACCAGCACCGACGGCCACGTGGTCGAGACGACGTACGACAGCCGCAAC CTCGGCGCGGCCGGCAGCCAGCGGCTCATCGTCGACGGCAACGTCCAGCCGGCTGCGCTCAACACCACCGGCCGG TTCAAGGAGGCCAAGTGGGCGCGGCTCGACGGCTTCGGCGGCTACCTGTTCCTCGACGGCCGCGAGGTCATCGCC CGCCGCGAGGAGCGCACCGGGAGCTGGCGGGACGTCGACGACGCCGGCGCCGCCGACCCCGTCACCCGCCGCTAC CTGACCCTCTATCGATCCCACGGGACCAATCCGAAGGACAGCGGTTACGCGTACGCCGTCATGCCCGGCGCCAAG ACGGGGGAGGTCCGGGCATCCGTCGGCAAGGTCAAGGTGCTGGCCAACACTCCCGAGCGGCAGGCCGTCCGGATC GGCGACGTCTTCGCCGCCAACTTCTTCGCGCCCGGCAGCACCGGAGGACTCCGGGTGTCGGCGCCGTGCAGCGTC CTGATACGGGGAGCGAGCATCTACGTCGCCGACCCCGGGCATCAGGCGAGCAAGGTCGACGTCACCTGGCAGGGC AATACCCGGACGGTGAACCTCGCCGGCATGGCCGGTGTCACCGTCAAGCTCTAG |
| Transcript | >Hirsu2|4813 ATGATCGTCTGCCTGGGCGCCGGCCTGACCAGCACCGACGGCCACGTGGTCGAGACGACGTACGACAGCCGCAAC CTCGGCGCGGCCGGCAGCCAGCGGCTCATCGTCGACGGCAACGTCCAGCCGGCTGCGCTCAACACCACCGGCCGG TTCAAGGAGGCCAAGTGGGCGCGGCTCGACGGCTTCGGCGGCTACCTGTTCCTCGACGGCCGCGAGGTCATCGCC CGCCGCGAGGAGCGCACCGGGAGCTGGCGGGACGTCGACGACGCCGGCGCCGCCGACCCCGTCACCCGCCGCTAC CTGACCCTCTATCGATCCCACGGGACCAATCCGAAGGACAGCGGTTACGCGTACGCCGTCATGCCCGGCGCCAAG ACGGGGGAGGTCCGGGCATCCGTCGGCAAGGTCAAGGTGCTGGCCAACACTCCCGAGCGGCAGGCCGTCCGGATC GGCGACGTCTTCGCCGCCAACTTCTTCGCGCCCGGCAGCACCGGAGGACTCCGGGTGTCGGCGCCGTGCAGCGTC CTGATACGGGGAGCGAGCATCTACGTCGCCGACCCCGGGCATCAGGCGAGCAAGGTCGACGTCACCTGGCAGGGC AATACCCGGACGGTGAACCTCGCCGGCATGGCCGGTGTCACCGTCAAGCTCTAG |
| Gene | >Hirsu2|4813 ATGATCGTCTGCCTGGGCGCCGGCCTGACCAGCACCGACGGCCACGTGGTCGAGACGACGTACGACAGCCGCAAC CTCGGCGCGGCCGGCAGCCAGCGGCTCATCGTCGACGGCAACGTCCAGCCGGCTGCGCTCAACACCACCGGCCGG TTCAAGGAGGCCAAGTGGGCGCGGCTCGACGGCTTCGGCGGCTACCTGTTCCTCGACGGCCGCGAGGTCATCGCC CGCCGCGAGGAGCGCACCGGGAGCTGGCGGGACGTCGACGACGCCGGCGCCGCCGACCCCGTCACCCGCCGCTAC CTGACCCTCTATCGATCCCACGGGACCAATCCGAAGGACAGCGGTTACGCGTACGCCGTCATGCCCGGCGCCAAG ACGGGGGAGGTCCGGGCATCCGTCGGCAAGGTCAAGGTGCTGGCCAACACTCCCGAGCGGCAGGCCGTCCGGATC GGCGACGTCTTCGCCGCCAACTTCTTCGCGCCCGGCAGCACCGGAGGACTCCGGGTGTCGGCGCCGTGCAGCGTC CTGATACGGGGAGCGAGCATCTACGTCGCCGACCCCGGGCATCAGGCGAGCAAGGTCGACGTCACCTGGCAGGGC AATACCCGGACGGTGAACCTCGCCGGCATGGCCGGTGTCACCGTCAAGCTCTAG |