© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4805 |
| Gene name | |
| Location | Contig_242:19293..20771 |
| Strand | + |
| Gene length (bp) | 1478 |
| Transcript length (bp) | 1035 |
| Coding sequence length (bp) | 1035 |
| Protein length (aa) | 345 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00270 | DEAD | DEAD/DEAH box helicase | 1.8E-09 | 251 | 318 |
| PF04851 | ResIII | Type III restriction enzyme, res subunit | 3.7E-07 | 254 | 321 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P7T8|YIW2_SCHPO | Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1 | 2 | 339 | 7.0E-44 |
| sp|Q8IY21|DDX60_HUMAN | Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60 PE=1 SV=3 | 222 | 336 | 7.0E-30 |
| sp|Q09475|YP93_CAEEL | Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans GN=C28H8.3 PE=3 SV=2 | 207 | 341 | 1.0E-27 |
| sp|Q54XN7|Y8827_DICDI | Uncharacterized helicase DDB_G0278827 OS=Dictyostelium discoideum GN=DDB_G0278827 PE=3 SV=1 | 199 | 338 | 3.0E-25 |
| sp|Q5H9U9|DDX6L_HUMAN | Probable ATP-dependent RNA helicase DDX60-like OS=Homo sapiens GN=DDX60L PE=2 SV=2 | 222 | 334 | 1.0E-24 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P7T8|YIW2_SCHPO | Uncharacterized helicase C694.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC694.02 PE=3 SV=1 | 2 | 339 | 7.0E-44 |
| sp|Q8IY21|DDX60_HUMAN | Probable ATP-dependent RNA helicase DDX60 OS=Homo sapiens GN=DDX60 PE=1 SV=3 | 222 | 336 | 7.0E-30 |
| sp|Q09475|YP93_CAEEL | Uncharacterized helicase C28H8.3 OS=Caenorhabditis elegans GN=C28H8.3 PE=3 SV=2 | 207 | 341 | 1.0E-27 |
| sp|Q54XN7|Y8827_DICDI | Uncharacterized helicase DDB_G0278827 OS=Dictyostelium discoideum GN=DDB_G0278827 PE=3 SV=1 | 199 | 338 | 3.0E-25 |
| sp|Q5H9U9|DDX6L_HUMAN | Probable ATP-dependent RNA helicase DDX60-like OS=Homo sapiens GN=DDX60L PE=2 SV=2 | 222 | 334 | 1.0E-24 |
| sp|F1LNJ2|U520_RAT | U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus GN=Snrnp200 PE=1 SV=1 | 185 | 316 | 3.0E-07 |
| sp|Q6P4T2|U520_MOUSE | U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus GN=Snrnp200 PE=1 SV=1 | 185 | 316 | 3.0E-07 |
| sp|Q23223|MTR4_CAEEL | mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1 | 246 | 316 | 4.0E-07 |
| sp|O75643|U520_HUMAN | U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 | 185 | 316 | 6.0E-07 |
| sp|Q9VUV9|U520_DROME | Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=l(3)72Ab PE=2 SV=4 | 203 | 317 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003677 | DNA binding | Yes |
| GO:0016787 | hydrolase activity | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0008144 | drug binding | No |
| GO:0036094 | small molecule binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0043168 | anion binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 47 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4805 MQYSASLTNASGKSITPETIISVSATAALNKLSIESHVKRNTNQPKANTRKQVPKSGRQRALEEAKKVQRRKLED KSTTATSFWEERLGEFRSEWSLTKRFHKTAKYLDGLSDQDRQVIAAEASIYVCDILASMILEGRRKGDRAAELGL YAMIWANLRQMGNMQLSPDCFATYKAFLALLKMNVPPEAAADMSMKSRKLPFETVLEVSRAELKLPVELVEFQLQ NCGPYLERSFDAAPDARVPNFQPDAWQRKVLDAIDADKSLFVVAPTSAGKTFISFYAMKKILQSDNDGTLVYVAP TKALVNQIAAEIQARFSKSYGNDGRSVWAIHTRDCRVNSSQSLG* |
| Coding | >Hirsu2|4805 ATGCAGTACTCCGCTAGCCTGACCAACGCCTCGGGAAAGAGCATCACCCCAGAGACAATAATCTCAGTTTCCGCA ACCGCTGCTTTGAATAAGTTGAGCATAGAGAGCCACGTTAAGCGAAATACGAACCAGCCCAAAGCAAACACTAGA AAGCAGGTCCCCAAGAGCGGTCGACAGAGGGCTTTAGAAGAGGCCAAGAAGGTCCAGAGGAGAAAGCTGGAAGAC AAGTCCACCACGGCAACGTCCTTTTGGGAAGAGCGTCTGGGCGAGTTTCGGTCGGAATGGAGCCTCACGAAGCGG TTCCATAAGACGGCCAAATACTTGGACGGCCTATCTGATCAAGACAGACAGGTCATTGCCGCGGAAGCCTCCATT TACGTCTGTGACATCCTGGCGTCTATGATACTTGAGGGCAGACGAAAGGGGGACAGGGCAGCCGAACTGGGCTTG TATGCCATGATTTGGGCAAACCTGCGCCAGATGGGGAACATGCAGCTCTCGCCAGACTGTTTTGCCACCTACAAG GCGTTCCTGGCTCTTCTCAAGATGAACGTGCCACCCGAGGCGGCCGCGGATATGTCCATGAAATCAAGAAAACTA CCTTTCGAGACTGTCCTGGAAGTCTCAAGGGCCGAGCTCAAACTCCCAGTCGAGCTGGTCGAGTTTCAGCTGCAG AACTGCGGACCGTATCTCGAGAGAAGTTTTGACGCAGCCCCGGACGCCCGTGTGCCGAACTTCCAGCCAGATGCC TGGCAGCGAAAAGTCCTGGACGCCATCGATGCCGACAAAAGCCTGTTCGTAGTTGCGCCGACCTCGGCCGGCAAG ACATTCATCTCGTTTTACGCAATGAAGAAGATTTTGCAGTCGGACAACGATGGCACTCTCGTCTATGTTGCTCCC ACCAAGGCATTGGTCAACCAGATTGCCGCGGAGATCCAGGCCCGATTCTCCAAGTCATACGGCAATGACGGCAGA TCTGTCTGGGCCATTCACACGAGAGACTGTAGGGTCAACAGCTCCCAGTCCCTGGGTTAG |
| Transcript | >Hirsu2|4805 ATGCAGTACTCCGCTAGCCTGACCAACGCCTCGGGAAAGAGCATCACCCCAGAGACAATAATCTCAGTTTCCGCA ACCGCTGCTTTGAATAAGTTGAGCATAGAGAGCCACGTTAAGCGAAATACGAACCAGCCCAAAGCAAACACTAGA AAGCAGGTCCCCAAGAGCGGTCGACAGAGGGCTTTAGAAGAGGCCAAGAAGGTCCAGAGGAGAAAGCTGGAAGAC AAGTCCACCACGGCAACGTCCTTTTGGGAAGAGCGTCTGGGCGAGTTTCGGTCGGAATGGAGCCTCACGAAGCGG TTCCATAAGACGGCCAAATACTTGGACGGCCTATCTGATCAAGACAGACAGGTCATTGCCGCGGAAGCCTCCATT TACGTCTGTGACATCCTGGCGTCTATGATACTTGAGGGCAGACGAAAGGGGGACAGGGCAGCCGAACTGGGCTTG TATGCCATGATTTGGGCAAACCTGCGCCAGATGGGGAACATGCAGCTCTCGCCAGACTGTTTTGCCACCTACAAG GCGTTCCTGGCTCTTCTCAAGATGAACGTGCCACCCGAGGCGGCCGCGGATATGTCCATGAAATCAAGAAAACTA CCTTTCGAGACTGTCCTGGAAGTCTCAAGGGCCGAGCTCAAACTCCCAGTCGAGCTGGTCGAGTTTCAGCTGCAG AACTGCGGACCGTATCTCGAGAGAAGTTTTGACGCAGCCCCGGACGCCCGTGTGCCGAACTTCCAGCCAGATGCC TGGCAGCGAAAAGTCCTGGACGCCATCGATGCCGACAAAAGCCTGTTCGTAGTTGCGCCGACCTCGGCCGGCAAG ACATTCATCTCGTTTTACGCAATGAAGAAGATTTTGCAGTCGGACAACGATGGCACTCTCGTCTATGTTGCTCCC ACCAAGGCATTGGTCAACCAGATTGCCGCGGAGATCCAGGCCCGATTCTCCAAGTCATACGGCAATGACGGCAGA TCTGTCTGGGCCATTCACACGAGAGACTGTAGGGTCAACAGCTCCCAGTCCCTGGGTTAG |
| Gene | >Hirsu2|4805 ATGCAGTACTCCGCTAGCCTGACCAACGCCTCGGGAAAGAGCATCACCCCAGAGACAATAATCTCAGTTTCCGCA ACCGCTGCTTTGAATAAGTTGAGCATAGAGAGCCACGTTAAGCGAAATACGAACCAGCCCAAAGCAAACACTAGA AAGCAGGTCCCCAAGAGCGGTCGACAGAGGGCTTTAGAAGAGGCCAAGAAGGTCCAGAGGAGAAAGCTGGAAGAC AAGTCCACCACGGCAACGTCCTTTTGGGAAGAGCGTCTGGGCGAGTTTCGGTCGGAATGGAGCCTCACGAAGCGG TTCCATAAGACGGCCAAATACTTGGACGGCCTATCTGATCAAGACAGACAGGTCATTGCCGCGGAAGCCTCCATT TACGTCTGTGACATCCTGGCGTCTATGATACTTGAGGGCAGACGAAAGGGGGACAGGGCAGCCGGTAAGCAACTA TGGGTATTGTTTCCCGACCAGTACGGCCCAAGATCTAATCTATGCTGTTTCAGAACTGGGCTTGTATGCCATGAT TTGGGCAAACCTGCGCCAGATGGGGAACATGCAGCTCTCGCCAGACTGTTTTGCCACCTACAAGGCGTTCCTGGC TCTTCTCAAGATGAACGTGCCACCCGAGGCGGCCGCGGATATGTCCATGAAATCAAGAAAACTACCTTTCGAGAC TGTCCTGGAAGTCTCAAGGGCCGAGCTCAAACTCCCAGTCGAGCTGGTCGAGTTTCAGCTGCAGAACTGCGGACC GTATCTCGAGAGAAGTTTTGACGCAGCCCCGGACGCCCGTGTGCCGAACTTCCAGCCAGATGCCTGGCAGCGAAA AGTCCTGGACGCCATCGATGCCGACAAAAGCCTGTTCGTAGTTGCGCCGACCTCGGCCGGCAAGACATTCATCTC GTTTTACGCAATGAAGAAGATTTTGCAGTCGGACAACGATGGCACTCTCGTCTATGTTGCTCCCACCAAGGCATT GGTCAACCAGATTGCCGCGGAGATCCAGGCCCGATTCTCCAAGTCATACGGCAATGACGGCAGATCTGTCTGGGC CATTCACACGAGAGACTGTAGGGTCAACAGTCCGTTAGGCTGTCAGGTCCTAGTCACGGTGCCCCATGTCCTCGG CATCATGCTCCTGGCGCCTTCGAACGCAGAGAGGCCCAATTCCTGGTCTTGCCGAGTCAGAAGAATCATCTTCGA CGAGGTCCATTGCATCGGACAGTCCAACGACGGCGTCATCTGGGAGCAGCTCCTTCTGCTTGCCCCGTGTCCCAT CATCGCTCTTTCTGCGACGGTGGGTAATCCAATGGAGTTCAACGCGTGGCTTGAAGAGTCGGAGAGGGCCAAGGG CAACAAATTAGAAATGATCATGCACTCCTCTCGTTATTCTGACCTGCGGAAATACACTTACAAGCCGCCACGGAT CTTCGTGTTCAGAGGGCTTGTGCCGACCAACAGGCTCCCAGTCCCTGGGTTAG |