© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4788 |
| Gene name | |
| Location | Contig_2412:684..1657 |
| Strand | - |
| Gene length (bp) | 973 |
| Transcript length (bp) | 642 |
| Coding sequence length (bp) | 642 |
| Protein length (aa) | 214 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04117 | Mpv17_PMP22 | Mpv17 / PMP22 family | 1.7E-18 | 146 | 207 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54GD8|PX24C_DICDI | PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1 | 2 | 212 | 4.0E-12 |
| sp|Q9V492|MPV17_DROME | Mpv17-like protein OS=Drosophila melanogaster GN=CG11077 PE=2 SV=1 | 106 | 209 | 3.0E-07 |
| sp|A5D787|M17L2_BOVIN | Mpv17-like protein 2 OS=Bos taurus GN=MPV17L2 PE=2 SV=1 | 50 | 213 | 4.0E-07 |
| sp|Q6DIY8|M17L2_XENTR | Mpv17-like protein 2 OS=Xenopus tropicalis GN=mpv17l2 PE=2 SV=1 | 50 | 212 | 5.0E-07 |
| sp|Q567V2|M17L2_HUMAN | Mpv17-like protein 2 OS=Homo sapiens GN=MPV17L2 PE=1 SV=2 | 50 | 212 | 2.0E-06 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q54GD8|PX24C_DICDI | PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1 | 2 | 212 | 4.0E-12 |
| sp|Q9V492|MPV17_DROME | Mpv17-like protein OS=Drosophila melanogaster GN=CG11077 PE=2 SV=1 | 106 | 209 | 3.0E-07 |
| sp|A5D787|M17L2_BOVIN | Mpv17-like protein 2 OS=Bos taurus GN=MPV17L2 PE=2 SV=1 | 50 | 213 | 4.0E-07 |
| sp|Q6DIY8|M17L2_XENTR | Mpv17-like protein 2 OS=Xenopus tropicalis GN=mpv17l2 PE=2 SV=1 | 50 | 212 | 5.0E-07 |
| sp|Q567V2|M17L2_HUMAN | Mpv17-like protein 2 OS=Homo sapiens GN=MPV17L2 PE=1 SV=2 | 50 | 212 | 2.0E-06 |
| sp|Q66GV0|MPV17_XENLA | Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2 | 76 | 212 | 2.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 126 | 148 | 22 |
| 2 | 163 | 185 | 22 |
| 3 | 192 | 211 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4788 MPSPIAAATLQAAALATASNLCAQLLDAHRNQDAPGGSSLLPFAKHPPPPSPGLDLRQLARFVALALLTTPPNYL WQQQLERVFPARPPPPPPRDIELRAVAADDDDDVPRRPPPLSVRNTLAKWFVDCIVLGALANTLAFLLLMGLLKG QPAPLIWRNVRTETVPIIVAGYKIWPVASIVSFVFVPVHRRIVFLSFVGLLWGIYLSLVAARV* |
| Coding | >Hirsu2|4788 ATGCCGTCGCCGATCGCGGCGGCGACGCTGCAGGCTGCTGCGCTGGCCACGGCCTCGAATTTGTGTGCGCAGCTG CTCGACGCGCACCGGAACCAGGACGCACCAGGCGGCAGCAGCCTCCTCCCCTTCGCCAAACACCCGCCTCCGCCG TCGCCGGGCCTCGACCTGCGCCAGCTGGCCCGCTTCGTCGCCCTGGCCCTGCTGACGACGCCGCCCAACTACCTG TGGCAGCAGCAGCTGGAGCGCGTCTTCCCGGCGCGCCCGCCGCCGCCGCCGCCGCGCGACATCGAGCTGCGAGCC GTCGCCGCCGACGACGACGACGACGTGCCGCGCCGCCCGCCGCCGCTGAGCGTCCGCAACACCCTGGCCAAGTGG TTCGTCGACTGCATCGTCCTCGGCGCCCTGGCCAACACGCTGGCCTTTCTGCTGCTCATGGGCCTGCTCAAGGGC CAGCCTGCGCCGCTGATCTGGCGCAATGTCCGGACGGAGACGGTCCCGATCATCGTGGCGGGGTACAAGATCTGG CCGGTTGCGTCCATCGTCAGCTTCGTCTTTGTGCCGGTCCATCGGCGCATTGTCTTCCTGAGCTTTGTCGGCTTG CTGTGGGGGATTTACTTGAGTCTTGTGGCCGCTAGGGTCTGA |
| Transcript | >Hirsu2|4788 ATGCCGTCGCCGATCGCGGCGGCGACGCTGCAGGCTGCTGCGCTGGCCACGGCCTCGAATTTGTGTGCGCAGCTG CTCGACGCGCACCGGAACCAGGACGCACCAGGCGGCAGCAGCCTCCTCCCCTTCGCCAAACACCCGCCTCCGCCG TCGCCGGGCCTCGACCTGCGCCAGCTGGCCCGCTTCGTCGCCCTGGCCCTGCTGACGACGCCGCCCAACTACCTG TGGCAGCAGCAGCTGGAGCGCGTCTTCCCGGCGCGCCCGCCGCCGCCGCCGCCGCGCGACATCGAGCTGCGAGCC GTCGCCGCCGACGACGACGACGACGTGCCGCGCCGCCCGCCGCCGCTGAGCGTCCGCAACACCCTGGCCAAGTGG TTCGTCGACTGCATCGTCCTCGGCGCCCTGGCCAACACGCTGGCCTTTCTGCTGCTCATGGGCCTGCTCAAGGGC CAGCCTGCGCCGCTGATCTGGCGCAATGTCCGGACGGAGACGGTCCCGATCATCGTGGCGGGGTACAAGATCTGG CCGGTTGCGTCCATCGTCAGCTTCGTCTTTGTGCCGGTCCATCGGCGCATTGTCTTCCTGAGCTTTGTCGGCTTG CTGTGGGGGATTTACTTGAGTCTTGTGGCCGCTAGGGTCTGA |
| Gene | >Hirsu2|4788 ATGCCGTCGCCGATCGCGGCGGCGACGCTGCAGGCTGCTGCGCTGGCCACGGCCTCGAATTTGTGTGCGCAGCTG CTCGACGCGCACCGGAACCAGGTCCGTCTTTCTCTCGAGATCGATCCCCCGTTTTGCAGCTGGGCCTGGCGCGAG AGGAGGCCGTGGAGCTCTACTCGGCTCGAGGGGAGACGTGAAGCCACGTCCGTCACGAGCAAGGACGAGAAGCCA GGTCAAGTGACGAGGAAAGACGTGAAGCTATACCCGGCACGAGACAAGACGTGAAGCCACGTCCGTCACGAGAGA CAGCCGAAGCTACACATCCAGCGCGAGAAAAGAGCGAGCCGTTGCTGAAGCGAAACAACAACAATGACAGGACGC ACCAGGCGGCAGCAGCCTCCTCCCCTTCGCCAAACACCCGCCTCCGCCGTCGCCGGGCCTCGACCTGCGCCAGCT GGCCCGCTTCGTCGCCCTGGCCCTGCTGACGACGCCGCCCAACTACCTGTGGCAGCAGCAGCTGGAGCGCGTCTT CCCGGCGCGCCCGCCGCCGCCGCCGCCGCGCGACATCGAGCTGCGAGCCGTCGCCGCCGACGACGACGACGACGT GCCGCGCCGCCCGCCGCCGCTGAGCGTCCGCAACACCCTGGCCAAGTGGTTCGTCGACTGCATCGTCCTCGGCGC CCTGGCCAACACGCTGGCCTTTCTGCTGCTCATGGGCCTGCTCAAGGGCCAGCCTGCGCCGCTGATCTGGCGCAA TGTCCGGACGGTGAGGGAGCCCCGGGTCTGGGGAGAGGGTGTGTGTGCTGATGGGTTCCGGCTCTAGGAGACGGT CCCGATCATCGTGGCGGGGTACAAGATCTGGCCGGTTGCGTCCATCGTCAGCTTCGTCTTTGTGCCGGTCCATCG GCGCATTGTCTTCCTGAGCTTTGTCGGCTTGCTGTGGGGGATTTACTTGAGTCTTGTGGCCGCTAGGGTCTGA |