Protein ID | Hirsu2|4756 |
Gene name | |
Location | Contig_240:11264..12361 |
Strand | + |
Gene length (bp) | 1097 |
Transcript length (bp) | 1032 |
Coding sequence length (bp) | 1032 |
Protein length (aa) | 344 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide | 0.2293 | 0.1574 | 0.2374 | 0.2305 | 0.1931 | 0.0067 | 0.5424 | 0.2719 | 0.2564 | 0.0038 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 24 | 0.998266 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 265 | 287 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2046 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|4756 MLFKPLAFAAAAAAFVIVPEITEAEVEEMFNILPIAPPTAEGLAGSAVAHQIDVPCPQCKGENSHLELVFTVEDR SRLMLNGFELYPTADPWSDLMAGLVQANGNRKSKRLGYSLAVGPMPAAAGTPLAEAAERVNIDLKVIEVGRQFVE RLPTVKVQIKDSKEGIVIEKIKVQEESEAPCSGMMCRAKDLAGEMLKSFNKLKGCVMKHKNHTHRPHHPHHGQQD AGVVPVHGDRPEQAAEEHQQPRHDWRQLLKNIASHIFLPVLMGVTAGVGVAILAMVLCSVAIRLTRLVKSKRSQR AGCCRRKHASRQQPLEVEKVGLMEEQADSEEQPPQYQDDESKN* |
Coding | >Hirsu2|4756 ATGTTGTTCAAGCCCCTCGCCTTCGCGGCCGCGGCCGCTGCGTTCGTCATCGTGCCCGAGATAACGGAAGCCGAG GTGGAGGAGATGTTCAACATACTGCCCATCGCGCCGCCCACGGCCGAGGGCCTGGCCGGGAGCGCCGTTGCCCAC CAGATCGACGTTCCGTGCCCACAGTGCAAGGGCGAGAATAGCCACCTGGAGCTCGTCTTCACGGTCGAGGATCGG TCGAGGCTGATGCTCAACGGCTTCGAACTCTACCCCACGGCCGACCCGTGGAGCGATCTCATGGCGGGCCTGGTG CAGGCCAACGGCAACAGGAAGAGCAAGAGGCTCGGCTACAGTCTGGCCGTCGGGCCCATGCCCGCCGCGGCCGGC ACCCCTCTGGCCGAGGCGGCGGAGCGCGTCAACATCGACCTCAAGGTCATCGAGGTCGGCCGCCAGTTCGTCGAG CGCCTGCCGACGGTCAAGGTGCAGATCAAGGACAGCAAGGAGGGCATCGTCATCGAGAAGATCAAGGTGCAGGAG GAGAGCGAGGCGCCGTGCAGCGGCATGATGTGCCGCGCCAAGGACCTGGCCGGCGAGATGCTCAAGTCGTTCAAC AAGCTCAAGGGCTGCGTCATGAAGCACAAGAACCACACCCACCGCCCGCACCACCCTCACCACGGCCAGCAAGAT GCCGGCGTCGTCCCTGTCCACGGAGACCGCCCCGAGCAGGCCGCCGAGGAGCACCAGCAGCCCCGCCACGACTGG CGCCAGCTGCTCAAGAACATTGCTTCTCACATCTTCCTGCCCGTCCTGATGGGCGTCACCGCCGGTGTCGGCGTT GCCATTCTCGCCATGGTCCTCTGCAGCGTCGCCATCCGCCTCACCAGGCTCGTCAAGAGCAAGCGGTCGCAGCGC GCCGGCTGCTGCCGCCGGAAGCACGCGTCGCGCCAGCAACCCCTCGAGGTGGAGAAGGTCGGCCTCATGGAGGAG CAGGCGGACAGCGAGGAGCAGCCGCCCCAGTACCAGGACGACGAGTCCAAGAACTAA |
Transcript | >Hirsu2|4756 ATGTTGTTCAAGCCCCTCGCCTTCGCGGCCGCGGCCGCTGCGTTCGTCATCGTGCCCGAGATAACGGAAGCCGAG GTGGAGGAGATGTTCAACATACTGCCCATCGCGCCGCCCACGGCCGAGGGCCTGGCCGGGAGCGCCGTTGCCCAC CAGATCGACGTTCCGTGCCCACAGTGCAAGGGCGAGAATAGCCACCTGGAGCTCGTCTTCACGGTCGAGGATCGG TCGAGGCTGATGCTCAACGGCTTCGAACTCTACCCCACGGCCGACCCGTGGAGCGATCTCATGGCGGGCCTGGTG CAGGCCAACGGCAACAGGAAGAGCAAGAGGCTCGGCTACAGTCTGGCCGTCGGGCCCATGCCCGCCGCGGCCGGC ACCCCTCTGGCCGAGGCGGCGGAGCGCGTCAACATCGACCTCAAGGTCATCGAGGTCGGCCGCCAGTTCGTCGAG CGCCTGCCGACGGTCAAGGTGCAGATCAAGGACAGCAAGGAGGGCATCGTCATCGAGAAGATCAAGGTGCAGGAG GAGAGCGAGGCGCCGTGCAGCGGCATGATGTGCCGCGCCAAGGACCTGGCCGGCGAGATGCTCAAGTCGTTCAAC AAGCTCAAGGGCTGCGTCATGAAGCACAAGAACCACACCCACCGCCCGCACCACCCTCACCACGGCCAGCAAGAT GCCGGCGTCGTCCCTGTCCACGGAGACCGCCCCGAGCAGGCCGCCGAGGAGCACCAGCAGCCCCGCCACGACTGG CGCCAGCTGCTCAAGAACATTGCTTCTCACATCTTCCTGCCCGTCCTGATGGGCGTCACCGCCGGTGTCGGCGTT GCCATTCTCGCCATGGTCCTCTGCAGCGTCGCCATCCGCCTCACCAGGCTCGTCAAGAGCAAGCGGTCGCAGCGC GCCGGCTGCTGCCGCCGGAAGCACGCGTCGCGCCAGCAACCCCTCGAGGTGGAGAAGGTCGGCCTCATGGAGGAG CAGGCGGACAGCGAGGAGCAGCCGCCCCAGTACCAGGACGACGAGTCCAAGAACTAA |
Gene | >Hirsu2|4756 ATGTTGTTCAAGCCCCTCGCCTTCGCGGCCGCGGCCGCTGCGTTCGTCATCGTGCCCGAGATAACGGAAGCCGAG GTGGAGGAGATGTTCAACATACTGCCCATCGCGCCGCCCACGGCCGAGGGCCTGGCCGGGAGCGCCGTTGCCCAC CAGATCGACGTTCCGTGCCCACAGTGCAAGGGCGAGAATAGCCACCTGGAGCTCGTCTTCACGGTCGAGGATCGG TCGAGGCTGATGCTCAACGGCTTCGAACTCTACCCCACGGCCGACCCGTGGAGCGATCTCATGGCGGGCCTGGTG CAGGCCAACGGCAACAGGAAGAGCAAGAGGCTCGGCTACAGTCTGGCCGTCGGGCCCATGCCCGCCGCGGCCGGC ACCCCTCTGGCCGAGGCGGCGGAGCGCGTCAACATCGACCTCAAGGTCATCGAGGTCGGCCGCCAGTTCGTCGAG CGCCTGCCGACGGTCAAGGTGCAGATCAAGGACAGCAAGGAGGGCATCGTCATCGAGAAGATCAAGGTGCAGGAG GAGAGCGAGGCGCCGTGCAGCGGCATGATGTGCCGCGCCAAGGACCTGGCCGGCGAGATGCTCAAGTCGTTCAAC AAGCTCAAGGGCTGCGTCATGAAGCACAAGAACCACACCCACCGCCCGCACCACCCTCACCACGGCCAGCAAGAT GCCGGCGTCGTCCCTGTCCACGGAGACCGCCCCGAGCAGGCCGCCGAGGAGCACCAGCAGCCCCGCCACGACTGG CGCCAGCTGCTCAAGAACATTGCTTCTCACATCTTCCTGCCCGTCCTGATGGGCGTCACCGCCGGTGTCGGCGTT GCCATGTGCGTCACCCCCTCTCCCTGCCATGAAAAAGTACCCATGGCCCGTGCTGACCAAGCTGTGACAGTCTCG CCATGGTCCTCTGCAGCGTCGCCATCCGCCTCACCAGGCTCGTCAAGAGCAAGCGGTCGCAGCGCGCCGGCTGCT GCCGCCGGAAGCACGCGTCGCGCCAGCAACCCCTCGAGGTGGAGAAGGTCGGCCTCATGGAGGAGCAGGCGGACA GCGAGGAGCAGCCGCCCCAGTACCAGGACGACGAGTCCAAGAACTAA |