Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|4735
Gene name
LocationContig_2396:1347..2741
Strand+
Gene length (bp)1394
Transcript length (bp)570
Coding sequence length (bp)570
Protein length (aa) 190

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.4E-12 66 126

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=1 SV=1 63 138 6.0E-32
sp|Q93VI4|PABN1_ARATH Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1 63 161 4.0E-30
sp|Q9LX90|PABN3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1 63 161 1.0E-27
sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=Pabpn1l-b PE=1 SV=1 63 138 3.0E-27
sp|Q9FJN9|PABN2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1 34 143 4.0E-27
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Swissprot ID Swissprot Description Start End E-value
sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pab2 PE=1 SV=1 63 138 6.0E-32
sp|Q93VI4|PABN1_ARATH Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PABN1 PE=1 SV=1 63 161 4.0E-30
sp|Q9LX90|PABN3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PABN3 PE=1 SV=1 63 161 1.0E-27
sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=Pabpn1l-b PE=1 SV=1 63 138 3.0E-27
sp|Q9FJN9|PABN2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1 34 143 4.0E-27
sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1 63 161 7.0E-27
sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1 63 161 7.0E-27
sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=Pabpn1l-a PE=1 SV=1 63 138 9.0E-27
sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b PE=2 SV=1 63 138 2.0E-26
sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a PE=2 SV=1 63 138 3.0E-26
sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1 63 138 5.0E-26
sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3 63 147 6.0E-26
sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3 63 147 6.0E-26
sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=1 SV=3 63 147 6.0E-26
sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1L PE=2 SV=1 45 169 2.0E-25
sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpn1l PE=2 SV=1 63 147 5.0E-23
sp|Q5XFR0|EPAB2_MOUSE Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1l PE=2 SV=1 63 151 2.0E-22
sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1 63 161 4.0E-21
sp|Q09301|YQOC_CAEEL Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=3 SV=1 63 146 2.0E-20
sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=3 SV=2 63 146 3.0E-20
sp|P40561|SGN1_YEAST RNA-binding protein SGN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGN1 PE=1 SV=1 69 139 5.0E-18
sp|Q75BJ7|NOP12_ASHGO Nucleolar protein 12 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NOP12 PE=3 SV=1 63 146 2.0E-08
sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2 SV=1 69 127 1.0E-07
sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2 68 127 1.0E-07
sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP12 PE=1 SV=1 63 123 2.0E-07
sp|Q6FUS6|NOP12_CANGA Nucleolar protein 12 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NOP12 PE=3 SV=1 63 128 3.0E-07
sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1 68 169 7.0E-07
sp|Q6CKV6|NOP12_KLULA Nucleolar protein 12 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NOP12 PE=3 SV=2 63 117 1.0E-06
sp|Q6C2Q7|NOP12_YARLI Nucleolar protein 12 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NOP12 PE=3 SV=1 60 156 1.0E-06
sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRD1 PE=3 SV=2 66 129 2.0E-06
sp|O13741|NOP12_SCHPO Nucleolar protein 12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nop12 PE=1 SV=1 66 164 2.0E-06
sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2 SV=2 63 152 3.0E-06
sp|Q9Y7Y3|YGR4_SCHPO Uncharacterized RNA-binding protein C365.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC365.04c PE=3 SV=1 66 127 3.0E-06
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GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear localization signal 0.6595 0.7158 0.1019 0.0642 0.0879 0.0157 0.1286 0.0562 0.0468 0.0007

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup2864
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|2410
Ophiocordyceps australis map64 (Brazil) OphauB2|7741
Ophiocordyceps camponoti-floridani Ophcf2|00947
Ophiocordyceps camponoti-rufipedis Ophun1|4533
Ophiocordyceps kimflemingae Ophio5|2155
Ophiocordyceps subramaniannii Hirsu2|4735 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|4735
MGKAAVPSNPPRQLASERPGPGYDPRAARVPIRARTRELRAIMSTAMPEEKPAAAGEREQDHDIAASEEEIQAHF
QSCGSINRVTILLDKFTGQPKGYAYVEFKEPSLVPQALVLNESVFKGRNIKVTPKRTNIPGMSRGRGRGAFRGGR
GFYGRGGGFPPRGGYRGAPWDLTTYRAPATDENGLIDDD*
Coding >Hirsu2|4735
ATGGGCAAGGCTGCAGTACCTAGTAACCCGCCGCGCCAGCTAGCGAGCGAGCGTCCTGGACCCGGATACGACCCT
CGCGCGGCACGCGTCCCGATTCGAGCACGCACAAGAGAGCTGAGAGCCATCATGTCGACGGCCATGCCCGAGGAG
AAGCCTGCGGCAGCGGGCGAGCGCGAGCAAGATCATGACATCGCGGCGAGCGAGGAGGAGATCCAGGCGCACTTC
CAGAGCTGCGGCTCCATCAACCGCGTCACCATCCTGCTCGACAAATTCACCGGCCAGCCCAAGGGCTACGCCTAC
GTCGAATTCAAGGAGCCCAGCCTGGTCCCGCAGGCCCTGGTCCTCAACGAGAGCGTCTTCAAGGGGCGCAACATC
AAGGTGACGCCGAAGCGAACCAACATTCCCGGCATGAGCCGCGGACGCGGACGCGGCGCCTTCCGCGGCGGCAGG
GGCTTCTATGGCCGAGGCGGAGGCTTCCCTCCACGCGGAGGATATCGCGGCGCCCCGTGGGACTTGACGACGTAC
CGGGCTCCCGCCACTGACGAAAATGGGCTGATCGACGACGATTGA
Transcript >Hirsu2|4735
ATGGGCAAGGCTGCAGTACCTAGTAACCCGCCGCGCCAGCTAGCGAGCGAGCGTCCTGGACCCGGATACGACCCT
CGCGCGGCACGCGTCCCGATTCGAGCACGCACAAGAGAGCTGAGAGCCATCATGTCGACGGCCATGCCCGAGGAG
AAGCCTGCGGCAGCGGGCGAGCGCGAGCAAGATCATGACATCGCGGCGAGCGAGGAGGAGATCCAGGCGCACTTC
CAGAGCTGCGGCTCCATCAACCGCGTCACCATCCTGCTCGACAAATTCACCGGCCAGCCCAAGGGCTACGCCTAC
GTCGAATTCAAGGAGCCCAGCCTGGTCCCGCAGGCCCTGGTCCTCAACGAGAGCGTCTTCAAGGGGCGCAACATC
AAGGTGACGCCGAAGCGAACCAACATTCCCGGCATGAGCCGCGGACGCGGACGCGGCGCCTTCCGCGGCGGCAGG
GGCTTCTATGGCCGAGGCGGAGGCTTCCCTCCACGCGGAGGATATCGCGGCGCCCCGTGGGACTTGACGACGTAC
CGGGCTCCCGCCACTGACGAAAATGGGCTGATCGACGACGATTGA
Gene >Hirsu2|4735
ATGGGCAAGGCTGCAGTACCTAGGTACATCCACAGACTGGCTGCCGTGGCACGTCGTCGTCGGGCAAACCTCGGC
TTGTTGCGCGCATCCCGTCCAAAATCTCATGCGGCTCAGCCGCGTGCCTCTTCCTCGCAACCAGCCATCCTATCC
AGCCTCTTCAACCCCGACAGGCACCCGCCTTTTCTCCTCTGCCCGACCTGGACCGTCGCCGAGTCCCCATGCCAT
CGCAGTAACCCGCCGCGCCAGCTAGCGAGCGAGCGTCCTGGTCCGTCATCCCTCTCTTGCTCCTCCTTCCTTGAC
GCGACATTGTCTTTTTTTTTTCCCTCAAGAGGCCACGCACCGCACACAAAGCATATTTCCTGGCGCCTTACCACG
CTCTGCCCCCTTATTCATATTGACGACGCGAGCTCATCAGCGCCTTGGCTGCTAACTCGCGCCAATTGCAGGACC
CGGATACGACCCTCGCGCGGCACGCGTCCCGATTCGAGCACGCACAAGAGAGCTGAGAGCCATCATGTCGACGGC
CATGCCCGAGGAGAAGCCTGCGGCAGCGGGCGAGCGCGAGCAAGATCATGACATCGCGGCGAGCGAGGAGGTGCG
TTGGGCGCGCAAAAGAGGCGGGACAGTGGCACAGCCAACCACACAACCAACCAAAAAGGAAAATAAAAAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGCCTCGCCCGAGGAGATCCAGGCGCACTTCCAGAGCTGCGGCTCCATCA
ACCGCGTCACCATCCTGCTCGACAAATTCACCGGCCAGCCCAAGGGGTACGCTCGACTCCCGAAGCCCCGACAGC
CTTTCCGCTTGCTGACCCGTCCATCGCCAGCTACGCCTACGTCGAATTCAAGGAGCCCAGCCTGGTCCCGCAGGC
CCTGGTCCTCAACGAGAGCGTCTTCAAGGGGCGCAACATCAAGGTGACGCCGAAGCGAACCAACATTCCCGGCAT
GAGCCGCGGACGCGGACGCGGCGCCTTCCGCGGCGGCAGGGGCTTCTATGGCCGAGGCGGAGGCTTCCCTCCACG
CGGAGGATATCGCGGCGGTTACCGAGGCCGTGCTCGTGGTTACACCCCTTACTAGGAGAAAGGAGGTGCATCTTC
AAGCTCGGAAGCCGGCTGTGGCCTGGGACAGCTTGCTGACCCCTGCTGTAGCCCCGTGGGACTTGACGACGTACC
GGGCTCCCGCCACTGACGAAAATGGGCTGATCGACGACGATTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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