© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|473 |
| Gene name | |
| Location | Contig_1095:3291..5221 |
| Strand | + |
| Gene length (bp) | 1930 |
| Transcript length (bp) | 1740 |
| Coding sequence length (bp) | 1740 |
| Protein length (aa) | 580 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07690 | MFS_1 | Major Facilitator Superfamily | 2.2E-29 | 97 | 485 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13879|YE1F_SCHPO | Uncharacterized transporter C1B3.15C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.15c PE=3 SV=1 | 37 | 528 | 2.0E-123 |
| sp|O13880|VHT1_SCHPO | Vitamin H transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vht1 PE=2 SV=1 | 77 | 525 | 3.0E-121 |
| sp|Q44470|TUB4_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 75 | 350 | 2.0E-34 |
| sp|P70786|TUB3_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 77 | 357 | 7.0E-34 |
| sp|Q9P6J0|YHDC_SCHPO | Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1 | 53 | 486 | 5.0E-29 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O13879|YE1F_SCHPO | Uncharacterized transporter C1B3.15C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1B3.15c PE=3 SV=1 | 37 | 528 | 2.0E-123 |
| sp|O13880|VHT1_SCHPO | Vitamin H transporter 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vht1 PE=2 SV=1 | 77 | 525 | 3.0E-121 |
| sp|Q44470|TUB4_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 75 | 350 | 2.0E-34 |
| sp|P70786|TUB3_AGRVI | Putative tartrate transporter OS=Agrobacterium vitis GN=ttuB PE=2 SV=1 | 77 | 357 | 7.0E-34 |
| sp|Q9P6J0|YHDC_SCHPO | Uncharacterized transporter C1683.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1683.12 PE=3 SV=1 | 53 | 486 | 5.0E-29 |
| sp|Q9US44|YIZG_SCHPO | Uncharacterized transporter C1002.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1002.16c PE=3 SV=1 | 87 | 458 | 4.0E-28 |
| sp|Q88FY6|NICT_PSEPK | Putative metabolite transport protein NicT OS=Pseudomonas putida (strain KT2440) GN=nicT PE=2 SV=1 | 65 | 282 | 3.0E-26 |
| sp|Q10097|YAOI_SCHPO | Uncharacterized transporter C11D3.18C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.18c PE=3 SV=1 | 27 | 480 | 4.0E-19 |
| sp|P53322|TNA1_YEAST | High-affinity nicotinic acid transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TNA1 PE=1 SV=1 | 13 | 479 | 1.0E-17 |
| sp|P76470|RHMT_ECOLI | Inner membrane transport protein RhmT OS=Escherichia coli (strain K12) GN=rhmT PE=1 SV=2 | 81 | 429 | 1.0E-16 |
| sp|Q9US37|YFZ4_SCHPO | Uncharacterized transporter C1039.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1039.04 PE=3 SV=1 | 77 | 280 | 6.0E-16 |
| sp|O43000|LIZ1_SCHPO | Pantothenate transporter liz1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=liz1 PE=2 SV=2 | 81 | 348 | 4.0E-15 |
| sp|Q05181|PHT1_PSEPU | Phthalate transporter OS=Pseudomonas putida GN=pht1 PE=3 SV=1 | 79 | 414 | 4.0E-15 |
| sp|Q07904|THI73_YEAST | Thiamine pathway transporter THI73 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=THI73 PE=1 SV=1 | 16 | 282 | 2.0E-12 |
| sp|P40445|YIQ6_YEAST | Uncharacterized transporter YIL166C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL166C PE=1 SV=1 | 82 | 471 | 2.0E-12 |
| sp|O94491|YC7A_SCHPO | Uncharacterized transporter C417.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC417.10 PE=3 SV=1 | 46 | 428 | 8.0E-08 |
| sp|P53241|VHT1_YEAST | Vitamin H transporter OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VHT1 PE=1 SV=1 | 72 | 276 | 1.0E-06 |
| sp|P27669|UHPC_SALTY | Regulatory protein UhpC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=uhpC PE=3 SV=1 | 73 | 291 | 1.0E-06 |
| sp|P25621|FEN2_YEAST | Pantothenate transporter FEN2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FEN2 PE=1 SV=1 | 128 | 283 | 2.0E-06 |
| sp|P09836|UHPC_ECOLI | Regulatory protein UhpC OS=Escherichia coli (strain K12) GN=uhpC PE=1 SV=3 | 64 | 287 | 5.0E-06 |
| sp|P39709|SEO1_YEAST | Probable transporter SEO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEO1 PE=1 SV=1 | 95 | 283 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0009987 | cellular process | No |
| GO:0051179 | localization | No |
| GO:0005215 | transporter activity | No |
| GO:0008150 | biological_process | No |
| GO:0051234 | establishment of localization | No |
| GO:0003674 | molecular_function | No |
| GO:0006810 | transport | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 40 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 93 | 115 | 22 |
| 2 | 135 | 157 | 22 |
| 3 | 164 | 186 | 22 |
| 4 | 191 | 213 | 22 |
| 5 | 225 | 247 | 22 |
| 6 | 257 | 279 | 22 |
| 7 | 346 | 368 | 22 |
| 8 | 378 | 400 | 22 |
| 9 | 407 | 429 | 22 |
| 10 | 439 | 461 | 22 |
| 11 | 468 | 490 | 22 |
| 12 | 513 | 535 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|473 MVQHQDAMPSDVDGKDSRPSDLDGKDSRSSEIAVKDDSRPSRFDGKQGDAVEDEASDVSQGPSAPLAGDVAPPRD YDVETIERIYRKLDLRIIPAFWILYFLCSAIRSNIGIAQTMNKDAGHDLMTMLRLSPRDVSTALALFYVSYVLFD FPSNLIMSKLSPRVWMARIVFATGLVGACFAAVHDAWSLKLLRFLLGLVIAGMWPGMAFYLTLFYPPSRTGKRIG MYFTAAQVSAAVVGLVSAGFQLMDGAGGLVGFQWMFLIYGLVAVVLSLALLWWLPDRPMPPGQERRPSRWLWWLP ATPEALTGRDAVVHYQDLRRVYHARSWTLKDLGLVLLDWRLWPLCLMYFGVVGVGIGTQLYGSVIIAAIRPQSTD IQVSLLFAPIWVMDLIAILVVTPVSDRFHRYRAFFFSAAACVQVAGLLTTTFALDNGWARYGGLLLVGFGLGPTV PICMAWTSEIFQRRHGEVGVAAATALVSGLGNLGSVTTTYALYTGWPEDARRGPHQFRKSNLTMVGILGMSIASA VLMTVLLGVVGNPPSSKLYDGDSASEIDDGAARRETQQRGFGRLSRWLKKARSA* |
| Coding | >Hirsu2|473 ATGGTCCAGCACCAGGACGCCATGCCGTCCGACGTGGACGGCAAGGACTCAAGGCCGTCCGACTTGGACGGAAAG GACTCAAGGTCGTCCGAAATCGCCGTCAAGGACGACTCCAGGCCGTCTCGTTTCGACGGCAAGCAAGGCGACGCC GTCGAGGATGAGGCAAGCGATGTGTCGCAGGGGCCGTCGGCGCCCTTGGCCGGCGACGTCGCTCCTCCACGAGAC TACGACGTCGAGACCATCGAGCGTATATACCGGAAGCTCGACCTGAGAATCATCCCCGCCTTCTGGATCCTCTAC TTCCTCTGCTCCGCCATCCGCTCCAACATCGGCATCGCCCAGACGATGAACAAGGACGCCGGCCACGACCTGATG ACGATGCTCCGCCTCTCCCCCCGGGATGTCTCCACGGCTCTTGCGCTCTTCTACGTCTCCTACGTTCTCTTCGAC TTCCCCTCCAATCTCATCATGAGCAAGCTGAGTCCCCGCGTCTGGATGGCCCGCATCGTCTTCGCCACCGGCCTC GTCGGCGCCTGCTTCGCCGCCGTCCACGACGCCTGGTCCCTCAAGCTTCTGCGCTTCCTGCTCGGCCTCGTCATC GCCGGCATGTGGCCCGGCATGGCATTTTACCTGACCCTCTTCTATCCGCCCTCCCGGACGGGCAAGCGCATCGGC ATGTACTTCACGGCCGCCCAGGTCTCCGCCGCCGTCGTCGGCCTCGTCTCCGCCGGCTTCCAGCTCATGGACGGC GCCGGGGGGCTGGTAGGCTTCCAGTGGATGTTCCTCATCTACGGCCTGGTGGCCGTCGTCCTCAGCCTCGCCCTT CTGTGGTGGCTGCCCGACCGCCCCATGCCGCCGGGCCAGGAGAGACGGCCGTCGCGCTGGCTGTGGTGGCTGCCC GCGACCCCCGAGGCCCTCACGGGCCGCGACGCCGTCGTCCACTACCAGGACCTTCGCCGCGTCTACCACGCCCGC TCCTGGACCCTCAAGGATCTCGGCCTCGTCCTGCTGGACTGGCGGCTGTGGCCCCTGTGCCTCATGTACTTCGGC GTGGTCGGGGTCGGCATCGGCACCCAGCTGTACGGCTCCGTCATCATCGCCGCCATCCGGCCGCAGTCGACCGAC ATTCAGGTGTCTCTGCTGTTTGCGCCCATCTGGGTCATGGATCTCATTGCGATCCTCGTCGTCACGCCCGTGTCG GACCGCTTCCATCGCTATCGGGCTTTCTTCTTCTCCGCCGCCGCCTGCGTCCAGGTCGCCGGCCTGCTGACGACG ACGTTTGCGCTCGACAACGGCTGGGCTAGATACGGCGGACTGCTGCTGGTGGGCTTCGGTCTCGGGCCGACGGTG CCGATCTGCATGGCCTGGACCTCGGAGATCTTCCAGCGCCGGCACGGCGAGGTCGGCGTCGCTGCCGCGACGGCC CTGGTGTCCGGGCTGGGCAACCTGGGAAGCGTCACGACGACCTACGCCCTGTACACGGGATGGCCCGAGGACGCC AGGCGCGGGCCGCACCAGTTTCGCAAGAGCAACCTGACCATGGTGGGCATCCTGGGCATGAGCATCGCCAGCGCC GTGCTCATGACGGTTCTGCTCGGGGTCGTGGGCAACCCGCCGAGTTCGAAGCTGTACGACGGCGACTCGGCGAGC GAGATCGACGACGGGGCTGCGAGGCGTGAGACGCAGCAGCGCGGATTCGGGCGGCTCAGCCGTTGGTTGAAGAAG GCCCGGAGTGCATAG |
| Transcript | >Hirsu2|473 ATGGTCCAGCACCAGGACGCCATGCCGTCCGACGTGGACGGCAAGGACTCAAGGCCGTCCGACTTGGACGGAAAG GACTCAAGGTCGTCCGAAATCGCCGTCAAGGACGACTCCAGGCCGTCTCGTTTCGACGGCAAGCAAGGCGACGCC GTCGAGGATGAGGCAAGCGATGTGTCGCAGGGGCCGTCGGCGCCCTTGGCCGGCGACGTCGCTCCTCCACGAGAC TACGACGTCGAGACCATCGAGCGTATATACCGGAAGCTCGACCTGAGAATCATCCCCGCCTTCTGGATCCTCTAC TTCCTCTGCTCCGCCATCCGCTCCAACATCGGCATCGCCCAGACGATGAACAAGGACGCCGGCCACGACCTGATG ACGATGCTCCGCCTCTCCCCCCGGGATGTCTCCACGGCTCTTGCGCTCTTCTACGTCTCCTACGTTCTCTTCGAC TTCCCCTCCAATCTCATCATGAGCAAGCTGAGTCCCCGCGTCTGGATGGCCCGCATCGTCTTCGCCACCGGCCTC GTCGGCGCCTGCTTCGCCGCCGTCCACGACGCCTGGTCCCTCAAGCTTCTGCGCTTCCTGCTCGGCCTCGTCATC GCCGGCATGTGGCCCGGCATGGCATTTTACCTGACCCTCTTCTATCCGCCCTCCCGGACGGGCAAGCGCATCGGC ATGTACTTCACGGCCGCCCAGGTCTCCGCCGCCGTCGTCGGCCTCGTCTCCGCCGGCTTCCAGCTCATGGACGGC GCCGGGGGGCTGGTAGGCTTCCAGTGGATGTTCCTCATCTACGGCCTGGTGGCCGTCGTCCTCAGCCTCGCCCTT CTGTGGTGGCTGCCCGACCGCCCCATGCCGCCGGGCCAGGAGAGACGGCCGTCGCGCTGGCTGTGGTGGCTGCCC GCGACCCCCGAGGCCCTCACGGGCCGCGACGCCGTCGTCCACTACCAGGACCTTCGCCGCGTCTACCACGCCCGC TCCTGGACCCTCAAGGATCTCGGCCTCGTCCTGCTGGACTGGCGGCTGTGGCCCCTGTGCCTCATGTACTTCGGC GTGGTCGGGGTCGGCATCGGCACCCAGCTGTACGGCTCCGTCATCATCGCCGCCATCCGGCCGCAGTCGACCGAC ATTCAGGTGTCTCTGCTGTTTGCGCCCATCTGGGTCATGGATCTCATTGCGATCCTCGTCGTCACGCCCGTGTCG GACCGCTTCCATCGCTATCGGGCTTTCTTCTTCTCCGCCGCCGCCTGCGTCCAGGTCGCCGGCCTGCTGACGACG ACGTTTGCGCTCGACAACGGCTGGGCTAGATACGGCGGACTGCTGCTGGTGGGCTTCGGTCTCGGGCCGACGGTG CCGATCTGCATGGCCTGGACCTCGGAGATCTTCCAGCGCCGGCACGGCGAGGTCGGCGTCGCTGCCGCGACGGCC CTGGTGTCCGGGCTGGGCAACCTGGGAAGCGTCACGACGACCTACGCCCTGTACACGGGATGGCCCGAGGACGCC AGGCGCGGGCCGCACCAGTTTCGCAAGAGCAACCTGACCATGGTGGGCATCCTGGGCATGAGCATCGCCAGCGCC GTGCTCATGACGGTTCTGCTCGGGGTCGTGGGCAACCCGCCGAGTTCGAAGCTGTACGACGGCGACTCGGCGAGC GAGATCGACGACGGGGCTGCGAGGCGTGAGACGCAGCAGCGCGGATTCGGGCGGCTCAGCCGTTGGTTGAAGAAG GCCCGGAGTGCATAG |
| Gene | >Hirsu2|473 ATGGTCCAGCACCAGGACGCCATGCCGTCCGACGTGGACGGCAAGGACTCAAGGCCGTCCGACTTGGACGGAAAG GACTCAAGGTCGTCCGAAATCGCCGTCAAGGACGACTCCAGGCCGTCTCGTTTCGACGGCAAGCAAGGCGACGCC GTCGAGGATGAGGCAAGCGATGTGTCGCAGGGGCCGTCGGCGCCCTTGGCCGGCGACGTCGCTCCTCCACGAGAC TACGACGTCGAGACCATCGAGCGTATATACCGGTACCGAGCTTTCTCTGCCCGCACGACGCCCTGTGGAATCCGT CGCTCACGCATCCGTCTGCTTGCAGGAAGCTCGACCTGAGAATCATCCCCGGTTCGTCTCCGCCGCCGCGCGCTC GCTGGATCCTCGCTCACCGCTAAGCCGCAGCCTTCTGGATCCTCTACTTCCTCTGCTCCGCCATCCGCTCCAACA TCGGCATCGCCCAGACGATGAACAAGGACGCCGGCCACGACCTGATGACGATGCTCCGCCTCTCCCCCCGGGATG TCTCCACGGCTCTTGCGCTCTTCTACGTCTCCTACGTTCTCTTCGACTTCCCCTCCAATCTCATCATGAGCAAGC TGAGTCCCCGCGTCTGGATGGCCCGCATCGTCTTCGCCACCGGCCTCGTCGGCGCCTGCTTCGCCGCCGTCCACG ACGCCTGGTCCCTCAAGCTTCTGCGCTTCCTGCTCGGCCTCGTCATCGCCGGCATGTGGCCCGGCATGGCATTTT ACCTGACCCTCTTCTATCCGCCCTCCCGGACGGGCAAGCGCATCGGCATGTACTTCACGGCCGCCCAGGTCTCCG CCGCCGTCGTCGGCCTCGTCTCCGCCGGCTTCCAGCTCATGGACGGCGCCGGGGGGCTGGTAGGCTTCCAGTGGA TGTTCCTCATCTACGGCCTGGTGGCCGTCGTCCTCAGCCTCGCCCTTCTGTGGTGGCTGCCCGACCGCCCCATGC CGCCGGGCCAGGAGAGACGGCCGTCGCGCTGGCTGTGGTGGCTGCCCGCGACCCCCGAGGCCCTCACGGGCCGCG ACGCCGTCGTCCACTACCAGGACCTTCGCCGCGTCTACCACGCCCGCTCCTGGACCCTCAAGGATCTCGGCCTCG TCCTGCTGGACTGGCGGCTGTGGCCCCTGTGCCTCATGTACTTCGGCGTGGTCGGGGTCGGCATCGGCACCCAGC TGTACGGCTCCGTCATCATCGCCGCCATCCGGCCGCAGTCGACCGACATTCAGGTGTCTCTGCTGTTTGCGCCCA TCTGGGTCGTGAGTCCGGCCTCTCCCGTCCCACCTTTGTCACGTACCAAAACTCACCAAGCTCGACAACGTGCAA GATGGATCTCATTGCGATCCTCGTCGTCACGCCCGTGTCGGACCGCTTCCATCGCTATCGGGCTTTCTTCTTCTC CGCCGCCGCCTGCGTCCAGGTCGCCGGCCTGCTGACGACGACGTTTGCGCTCGACAACGGCTGGGCTAGATACGG CGGACTGCTGCTGGTGGGCTTCGGTCTCGGGCCGACGGTGCCGATCTGCATGGCCTGGACCTCGGAGATCTTCCA GCGCCGGCACGGCGAGGTCGGCGTCGCTGCCGCGACGGCCCTGGTGTCCGGGCTGGGCAACCTGGGAAGCGTCAC GACGACCTACGCCCTGTACACGGGATGGCCCGAGGACGCCAGGCGCGGGCCGCACCAGTTTCGCAAGAGCAACCT GACCATGGTGGGCATCCTGGGCATGAGCATCGCCAGCGCCGTGCTCATGACGGTTCTGCTCGGGGTCGTGGGCAA CCCGCCGAGTTCGAAGCTGTACGACGGCGACTCGGCGAGCGAGATCGACGACGGGGCTGCGAGGCGTGAGACGCA GCAGCGCGGATTCGGGCGGCTCAGCCGTTGGTTGAAGAAGGCCCGGAGTGCATAG |