© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|4720 |
| Gene name | |
| Location | Contig_239:14911..16228 |
| Strand | + |
| Gene length (bp) | 1317 |
| Transcript length (bp) | 1317 |
| Coding sequence length (bp) | 1317 |
| Protein length (aa) | 439 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1907 | 0.1142 | 0.8863 | 0.2433 | 0.0789 | 0.0311 | 0.2011 | 0.2131 | 0.2084 | 0.0008 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.999237 |
| Orthofinder run ID | 4 |
| Orthogroup | 7040 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps australis 1348a (Ghana) | OphauG2|5978 |
| Ophiocordyceps australis map64 (Brazil) | OphauB2|1518 |
| Ophiocordyceps subramaniannii | Hirsu2|4720 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4720 MRASHWTAMLLAGLLAVVATEKMGPEPEPKPELEMEADDELDAEGFHIHPDLPDGHYNIELRRDGEHLVRRWAPL QKRWEQLEAPPQKRRERLEKRQGGTGQVTFLVDEDTTTVEGVSQDLFTLQRLPLPRTLISCEPDRSYNTLRYPLP KADYEASREALFNWCNIYKMYEGHVSLALNGTVAVYACQRKFNKMGLNICSKAEFLAVEARVDNACGNSSGYGFI YDWGKEYGRTWKGEAVCRRWNQFRYNQPARQLFRHTAGNGGKPNLFEGIRSEFKDPDHMYRKVTFESPPDVDYDD GVRDNYGHMYGPYGLFWFYGWNWGKKHDNSPTPRPGHKGYDVASDDPDKAARERVALPGAVPDHFAPLARPAAAV VPGAPPDDTPAAPAPDPGPDSNTVAPPDKAAATAEPDIGPAAGPASTAVGRRGKWRREPGEKQ* |
| Coding | >Hirsu2|4720 ATGAGGGCATCGCATTGGACGGCGATGCTCTTGGCCGGGCTGTTGGCCGTGGTCGCGACGGAAAAGATGGGGCCG GAGCCGGAGCCGAAGCCGGAGCTGGAGATGGAGGCGGACGACGAGCTGGACGCGGAGGGCTTCCACATCCACCCC GACCTGCCCGACGGACACTACAACATCGAGCTCCGGCGCGACGGGGAGCACCTGGTGCGGCGGTGGGCGCCGCTG CAGAAGCGGTGGGAGCAGCTGGAGGCGCCGCCGCAGAAGCGGCGGGAGCGGCTGGAGAAGCGGCAGGGCGGGACG GGCCAGGTGACGTTCCTGGTGGACGAGGACACGACGACGGTGGAGGGGGTGTCGCAGGACCTGTTCACGCTGCAG CGGCTGCCGCTGCCGCGGACGCTCATCTCGTGCGAGCCGGACCGCAGCTACAACACGCTGCGGTACCCGCTGCCC AAGGCCGACTACGAGGCCTCGCGCGAGGCCCTCTTCAACTGGTGCAACATCTACAAGATGTACGAGGGCCACGTG TCGCTGGCGCTCAACGGCACCGTCGCCGTCTACGCCTGCCAGCGCAAGTTCAACAAGATGGGCCTCAACATCTGC TCCAAGGCCGAGTTCCTCGCGGTCGAGGCCCGGGTCGACAACGCGTGCGGCAACAGCTCCGGCTACGGCTTCATC TACGACTGGGGCAAGGAGTACGGCCGGACGTGGAAGGGCGAGGCGGTCTGCCGCCGCTGGAACCAGTTCCGCTAC AACCAGCCGGCCCGCCAGCTCTTCCGCCACACGGCCGGCAACGGCGGCAAGCCGAACCTGTTCGAGGGCATCCGG TCCGAGTTCAAGGACCCGGACCACATGTACCGCAAGGTCACCTTCGAGTCGCCGCCCGACGTCGACTACGACGAC GGCGTGCGCGACAACTACGGCCACATGTACGGGCCCTACGGCCTCTTCTGGTTCTACGGCTGGAACTGGGGCAAG AAGCACGACAACTCGCCCACGCCCCGCCCCGGCCACAAGGGCTACGACGTCGCCAGCGACGACCCGGACAAGGCC GCCCGCGAGCGCGTCGCCCTGCCCGGCGCCGTCCCGGACCACTTCGCGCCCCTGGCCAGGCCTGCTGCTGCTGTT GTCCCCGGCGCGCCGCCCGACGACACGCCTGCCGCCCCCGCCCCCGACCCCGGCCCCGACTCCAACACCGTCGCG CCGCCGGACAAGGCTGCTGCCACGGCTGAACCCGACATCGGTCCCGCCGCCGGCCCGGCCTCCACCGCCGTCGGC AGGAGGGGTAAGTGGCGGCGCGAGCCCGGCGAGAAGCAGTGA |
| Transcript | >Hirsu2|4720 ATGAGGGCATCGCATTGGACGGCGATGCTCTTGGCCGGGCTGTTGGCCGTGGTCGCGACGGAAAAGATGGGGCCG GAGCCGGAGCCGAAGCCGGAGCTGGAGATGGAGGCGGACGACGAGCTGGACGCGGAGGGCTTCCACATCCACCCC GACCTGCCCGACGGACACTACAACATCGAGCTCCGGCGCGACGGGGAGCACCTGGTGCGGCGGTGGGCGCCGCTG CAGAAGCGGTGGGAGCAGCTGGAGGCGCCGCCGCAGAAGCGGCGGGAGCGGCTGGAGAAGCGGCAGGGCGGGACG GGCCAGGTGACGTTCCTGGTGGACGAGGACACGACGACGGTGGAGGGGGTGTCGCAGGACCTGTTCACGCTGCAG CGGCTGCCGCTGCCGCGGACGCTCATCTCGTGCGAGCCGGACCGCAGCTACAACACGCTGCGGTACCCGCTGCCC AAGGCCGACTACGAGGCCTCGCGCGAGGCCCTCTTCAACTGGTGCAACATCTACAAGATGTACGAGGGCCACGTG TCGCTGGCGCTCAACGGCACCGTCGCCGTCTACGCCTGCCAGCGCAAGTTCAACAAGATGGGCCTCAACATCTGC TCCAAGGCCGAGTTCCTCGCGGTCGAGGCCCGGGTCGACAACGCGTGCGGCAACAGCTCCGGCTACGGCTTCATC TACGACTGGGGCAAGGAGTACGGCCGGACGTGGAAGGGCGAGGCGGTCTGCCGCCGCTGGAACCAGTTCCGCTAC AACCAGCCGGCCCGCCAGCTCTTCCGCCACACGGCCGGCAACGGCGGCAAGCCGAACCTGTTCGAGGGCATCCGG TCCGAGTTCAAGGACCCGGACCACATGTACCGCAAGGTCACCTTCGAGTCGCCGCCCGACGTCGACTACGACGAC GGCGTGCGCGACAACTACGGCCACATGTACGGGCCCTACGGCCTCTTCTGGTTCTACGGCTGGAACTGGGGCAAG AAGCACGACAACTCGCCCACGCCCCGCCCCGGCCACAAGGGCTACGACGTCGCCAGCGACGACCCGGACAAGGCC GCCCGCGAGCGCGTCGCCCTGCCCGGCGCCGTCCCGGACCACTTCGCGCCCCTGGCCAGGCCTGCTGCTGCTGTT GTCCCCGGCGCGCCGCCCGACGACACGCCTGCCGCCCCCGCCCCCGACCCCGGCCCCGACTCCAACACCGTCGCG CCGCCGGACAAGGCTGCTGCCACGGCTGAACCCGACATCGGTCCCGCCGCCGGCCCGGCCTCCACCGCCGTCGGC AGGAGGGGTAAGTGGCGGCGCGAGCCCGGCGAGAAGCAGTGA |
| Gene | >Hirsu2|4720 ATGAGGGCATCGCATTGGACGGCGATGCTCTTGGCCGGGCTGTTGGCCGTGGTCGCGACGGAAAAGATGGGGCCG GAGCCGGAGCCGAAGCCGGAGCTGGAGATGGAGGCGGACGACGAGCTGGACGCGGAGGGCTTCCACATCCACCCC GACCTGCCCGACGGACACTACAACATCGAGCTCCGGCGCGACGGGGAGCACCTGGTGCGGCGGTGGGCGCCGCTG CAGAAGCGGTGGGAGCAGCTGGAGGCGCCGCCGCAGAAGCGGCGGGAGCGGCTGGAGAAGCGGCAGGGCGGGACG GGCCAGGTGACGTTCCTGGTGGACGAGGACACGACGACGGTGGAGGGGGTGTCGCAGGACCTGTTCACGCTGCAG CGGCTGCCGCTGCCGCGGACGCTCATCTCGTGCGAGCCGGACCGCAGCTACAACACGCTGCGGTACCCGCTGCCC AAGGCCGACTACGAGGCCTCGCGCGAGGCCCTCTTCAACTGGTGCAACATCTACAAGATGTACGAGGGCCACGTG TCGCTGGCGCTCAACGGCACCGTCGCCGTCTACGCCTGCCAGCGCAAGTTCAACAAGATGGGCCTCAACATCTGC TCCAAGGCCGAGTTCCTCGCGGTCGAGGCCCGGGTCGACAACGCGTGCGGCAACAGCTCCGGCTACGGCTTCATC TACGACTGGGGCAAGGAGTACGGCCGGACGTGGAAGGGCGAGGCGGTCTGCCGCCGCTGGAACCAGTTCCGCTAC AACCAGCCGGCCCGCCAGCTCTTCCGCCACACGGCCGGCAACGGCGGCAAGCCGAACCTGTTCGAGGGCATCCGG TCCGAGTTCAAGGACCCGGACCACATGTACCGCAAGGTCACCTTCGAGTCGCCGCCCGACGTCGACTACGACGAC GGCGTGCGCGACAACTACGGCCACATGTACGGGCCCTACGGCCTCTTCTGGTTCTACGGCTGGAACTGGGGCAAG AAGCACGACAACTCGCCCACGCCCCGCCCCGGCCACAAGGGCTACGACGTCGCCAGCGACGACCCGGACAAGGCC GCCCGCGAGCGCGTCGCCCTGCCCGGCGCCGTCCCGGACCACTTCGCGCCCCTGGCCAGGCCTGCTGCTGCTGTT GTCCCCGGCGCGCCGCCCGACGACACGCCTGCCGCCCCCGCCCCCGACCCCGGCCCCGACTCCAACACCGTCGCG CCGCCGGACAAGGCTGCTGCCACGGCTGAACCCGACATCGGTCCCGCCGCCGGCCCGGCCTCCACCGCCGTCGGC AGGAGGGGTAAGTGGCGGCGCGAGCCCGGCGAGAAGCAGTGA |