© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|4718 |
| Gene name | |
| Location | Contig_239:10806..12000 |
| Strand | + |
| Gene length (bp) | 1194 |
| Transcript length (bp) | 1068 |
| Coding sequence length (bp) | 1068 |
| Protein length (aa) | 356 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09451 | ATG27 | Autophagy-related protein 27 | 1.5E-92 | 16 | 351 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D4B086|ATG27_ARTBC | Autophagy-related protein 27 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01857 PE=1 SV=1 | 6 | 339 | 7.0E-25 |
| sp|Q6CBS9|ATG27_YARLI | Autophagy-related protein 27 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG27 PE=3 SV=1 | 245 | 355 | 5.0E-23 |
| sp|A7KAK7|ATG27_PICAN | Autophagy-related protein 27 OS=Pichia angusta GN=ATG27 PE=3 SV=1 | 240 | 355 | 8.0E-11 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 25 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 284 | 306 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|4718 MYPPQLSSVAVAVAVALAPLRTSAMLRCENVRVDGHSYDLSQLSGPRSVVTSLYESIPDVYHNTTYTVDICKPLK KSGKAKKTEECPNGTRVCAIKRFLQGQTNAVEQVVAIAGSLENAGGSQFDYDAVRLKTSDSNSDSQKEGLRLVLK GGKHPLDGPVAERREQRAVIEFLCDHNKKGDEGEWEAEDKYDKEGGPQRRADDKGGDGKDDGGNGTSAIEHQLRK PDAALIWESYEREKDADVLRLTWHTKFACETQSGGGGGGGDGGDGGNKGDGNSSRHWGFFTWFVLVLFLGIAAYL IFGSWLNYNRYGARGWDLVPHGDMIRDVPYLMKDWVRRVLNTVQGTGSRGGYSAV* |
| Coding | >Hirsu2|4718 ATGTATCCGCCTCAATTATCAAGCGTCGCCGTCGCCGTCGCCGTCGCCCTCGCGCCGCTGCGGACGTCGGCGATG CTGCGATGCGAGAACGTGCGAGTCGACGGCCACAGCTACGACCTCTCCCAGCTGTCGGGCCCGCGGTCCGTCGTG ACGTCTCTGTACGAGTCGATCCCCGACGTGTACCACAACACGACCTACACCGTGGACATCTGCAAGCCGCTGAAG AAGAGCGGCAAGGCGAAGAAGACGGAGGAGTGTCCCAACGGGACCCGAGTCTGTGCCATCAAGCGCTTCCTCCAG GGCCAGACGAACGCAGTCGAGCAGGTGGTGGCCATCGCCGGATCTCTGGAGAACGCGGGCGGGTCGCAATTCGAC TACGATGCCGTGCGGTTGAAGACGAGCGACTCCAACAGCGACTCCCAGAAGGAGGGCTTGAGGCTCGTGCTCAAG GGCGGCAAGCACCCCCTGGACGGCCCGGTCGCCGAGCGACGCGAGCAGAGGGCCGTCATCGAGTTTCTCTGCGAT CACAACAAGAAGGGTGACGAGGGCGAGTGGGAGGCCGAGGACAAGTACGACAAGGAGGGCGGGCCGCAGCGGCGA GCCGACGACAAGGGGGGCGACGGCAAGGACGACGGCGGCAACGGCACGTCCGCCATCGAACATCAGCTCCGGAAG CCCGACGCGGCTCTCATATGGGAGAGCTACGAGCGGGAGAAGGATGCCGACGTGCTGCGCCTGACCTGGCACACC AAGTTCGCCTGCGAGACGCAGAGCGGCGGCGGCGGCGGCGGCGGCGACGGCGGCGACGGCGGCAACAAGGGCGAC GGCAACAGCAGCCGCCACTGGGGCTTCTTCACCTGGTTTGTCCTTGTCCTCTTCCTCGGCATCGCCGCCTACCTC ATCTTCGGCTCTTGGCTCAACTATAACCGGTACGGAGCTAGAGGCTGGGACCTGGTTCCGCACGGCGACATGATC CGCGACGTCCCCTACCTGATGAAAGACTGGGTGAGAAGGGTGCTCAACACCGTCCAAGGAACGGGCAGCAGGGGA GGGTACAGCGCAGTCTAA |
| Transcript | >Hirsu2|4718 ATGTATCCGCCTCAATTATCAAGCGTCGCCGTCGCCGTCGCCGTCGCCCTCGCGCCGCTGCGGACGTCGGCGATG CTGCGATGCGAGAACGTGCGAGTCGACGGCCACAGCTACGACCTCTCCCAGCTGTCGGGCCCGCGGTCCGTCGTG ACGTCTCTGTACGAGTCGATCCCCGACGTGTACCACAACACGACCTACACCGTGGACATCTGCAAGCCGCTGAAG AAGAGCGGCAAGGCGAAGAAGACGGAGGAGTGTCCCAACGGGACCCGAGTCTGTGCCATCAAGCGCTTCCTCCAG GGCCAGACGAACGCAGTCGAGCAGGTGGTGGCCATCGCCGGATCTCTGGAGAACGCGGGCGGGTCGCAATTCGAC TACGATGCCGTGCGGTTGAAGACGAGCGACTCCAACAGCGACTCCCAGAAGGAGGGCTTGAGGCTCGTGCTCAAG GGCGGCAAGCACCCCCTGGACGGCCCGGTCGCCGAGCGACGCGAGCAGAGGGCCGTCATCGAGTTTCTCTGCGAT CACAACAAGAAGGGTGACGAGGGCGAGTGGGAGGCCGAGGACAAGTACGACAAGGAGGGCGGGCCGCAGCGGCGA GCCGACGACAAGGGGGGCGACGGCAAGGACGACGGCGGCAACGGCACGTCCGCCATCGAACATCAGCTCCGGAAG CCCGACGCGGCTCTCATATGGGAGAGCTACGAGCGGGAGAAGGATGCCGACGTGCTGCGCCTGACCTGGCACACC AAGTTCGCCTGCGAGACGCAGAGCGGCGGCGGCGGCGGCGGCGGCGACGGCGGCGACGGCGGCAACAAGGGCGAC GGCAACAGCAGCCGCCACTGGGGCTTCTTCACCTGGTTTGTCCTTGTCCTCTTCCTCGGCATCGCCGCCTACCTC ATCTTCGGCTCTTGGCTCAACTATAACCGGTACGGAGCTAGAGGCTGGGACCTGGTTCCGCACGGCGACATGATC CGCGACGTCCCCTACCTGATGAAAGACTGGGTGAGAAGGGTGCTCAACACCGTCCAAGGAACGGGCAGCAGGGGA GGGTACAGCGCAGTCTAA |
| Gene | >Hirsu2|4718 ATGTATCCGCCTCAATTATCAAGCGTCGCCGTCGCCGTCGCCGTCGCCCTCGCGCCGCTGCGGACGTCGGCGATG CTGCGATGCGAGAACGTGCGAGTCGACGGCCACAGCTACGACCTCTCCCAGCTGTCGGGCCCGCGGTCCGTCGTG ACGTCTCTGTACGAGTCGATCCCCGACGTGTACCACAACACGACCTACACCGTGGACATCTGCAAGCCGCTGAAG AAGAGCGGCAAGGCGAAGAAGACGGAGGAGTGTCCCAACGGGACCCGAGGTGAGCCTCCTCCGCCTCCTCGTCCG GGCGCGCGCTGACGCCGTGCGTCAACCAGTCTGTGCCATCAAGCGCTTCCTCCAGGGCCAGACGAACGCAGTCGA GCAGGTGGTGGCCATCGCCGGATCTCTGGAGAACGCGGGCGGGTCGCAATTCGACTACGATGCCGTGCGGTTGAA GACGAGCGACTCCAACAGCGACTCCCAGAAGGAGGGCTTGAGGCTCGTGCTCAAGGGCGGCAAGCACCCCCTGGA CGGCCCGGTCGCCGAGCGACGCGAGCAGAGGGCCGTCATCGAGTTTCTCTGCGATCACAACAAGAAGGGTGACGA GGGCGAGTGGGAGGCCGAGGACAAGTACGACAAGGAGGGCGGGCCGCAGCGGCGAGCCGACGACAAGGGGGGCGA CGGCAAGGACGACGGCGGCAACGGCACGTCCGCCATCGAACATCAGCTCCGGAAGCCCGACGCGGCTCTCATATG GGAGAGCTACGAGCGGGAGAAGGATGCCGACGTGCTGCGCCTGACCTGGCACACCAAGTTCGCCTGCGAGACGCA GAGCGGCGGCGGCGGCGGCGGCGGCGACGGCGGCGACGGCGGCAACAAGGGCGACGGCAACAGCAGCCGCCACTG GGGCTTCTTCACCTGGTTTGTCCTTGTGTACGCTCGCGCCCGCCCTGTCCCTGGCCAAGGGTTGTGTCGAGGGCT GTGCTGACTTGTGCTTCCCGCAGCCTCTTCCTCGGCATCGCCGCCTACCTCATCTTCGGCTCTTGGCTCAACTAT AACCGGTACGGAGCTAGAGGCTGGGACCTGGTTCCGCACGGCGACATGATCCGCGACGTCCCCTACCTGATGAAA GACTGGGTGAGAAGGGTGCTCAACACCGTCCAAGGAACGGGCAGCAGGGGAGGGTACAGCGCAGTCTAA |