Protein ID | Hirsu2|4718 |
Gene name | |
Location | Contig_239:10806..12000 |
Strand | + |
Gene length (bp) | 1194 |
Transcript length (bp) | 1068 |
Coding sequence length (bp) | 1068 |
Protein length (aa) | 356 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09451 | ATG27 | Autophagy-related protein 27 | 1.5E-92 | 16 | 351 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|D4B086|ATG27_ARTBC | Autophagy-related protein 27 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_01857 PE=1 SV=1 | 6 | 339 | 7.0E-25 |
sp|Q6CBS9|ATG27_YARLI | Autophagy-related protein 27 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG27 PE=3 SV=1 | 245 | 355 | 5.0E-23 |
sp|A7KAK7|ATG27_PICAN | Autophagy-related protein 27 OS=Pichia angusta GN=ATG27 PE=3 SV=1 | 240 | 355 | 8.0E-11 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1414 | 0.077 | 0.1128 | 0.2796 | 0.1555 | 0.0128 | 0.5844 | 0.5156 | 0.5151 | 0.0285 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 24 | 0.999695 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 284 | 306 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2857 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|4718 MYPPQLSSVAVAVAVALAPLRTSAMLRCENVRVDGHSYDLSQLSGPRSVVTSLYESIPDVYHNTTYTVDICKPLK KSGKAKKTEECPNGTRVCAIKRFLQGQTNAVEQVVAIAGSLENAGGSQFDYDAVRLKTSDSNSDSQKEGLRLVLK GGKHPLDGPVAERREQRAVIEFLCDHNKKGDEGEWEAEDKYDKEGGPQRRADDKGGDGKDDGGNGTSAIEHQLRK PDAALIWESYEREKDADVLRLTWHTKFACETQSGGGGGGGDGGDGGNKGDGNSSRHWGFFTWFVLVLFLGIAAYL IFGSWLNYNRYGARGWDLVPHGDMIRDVPYLMKDWVRRVLNTVQGTGSRGGYSAV* |
Coding | >Hirsu2|4718 ATGTATCCGCCTCAATTATCAAGCGTCGCCGTCGCCGTCGCCGTCGCCCTCGCGCCGCTGCGGACGTCGGCGATG CTGCGATGCGAGAACGTGCGAGTCGACGGCCACAGCTACGACCTCTCCCAGCTGTCGGGCCCGCGGTCCGTCGTG ACGTCTCTGTACGAGTCGATCCCCGACGTGTACCACAACACGACCTACACCGTGGACATCTGCAAGCCGCTGAAG AAGAGCGGCAAGGCGAAGAAGACGGAGGAGTGTCCCAACGGGACCCGAGTCTGTGCCATCAAGCGCTTCCTCCAG GGCCAGACGAACGCAGTCGAGCAGGTGGTGGCCATCGCCGGATCTCTGGAGAACGCGGGCGGGTCGCAATTCGAC TACGATGCCGTGCGGTTGAAGACGAGCGACTCCAACAGCGACTCCCAGAAGGAGGGCTTGAGGCTCGTGCTCAAG GGCGGCAAGCACCCCCTGGACGGCCCGGTCGCCGAGCGACGCGAGCAGAGGGCCGTCATCGAGTTTCTCTGCGAT CACAACAAGAAGGGTGACGAGGGCGAGTGGGAGGCCGAGGACAAGTACGACAAGGAGGGCGGGCCGCAGCGGCGA GCCGACGACAAGGGGGGCGACGGCAAGGACGACGGCGGCAACGGCACGTCCGCCATCGAACATCAGCTCCGGAAG CCCGACGCGGCTCTCATATGGGAGAGCTACGAGCGGGAGAAGGATGCCGACGTGCTGCGCCTGACCTGGCACACC AAGTTCGCCTGCGAGACGCAGAGCGGCGGCGGCGGCGGCGGCGGCGACGGCGGCGACGGCGGCAACAAGGGCGAC GGCAACAGCAGCCGCCACTGGGGCTTCTTCACCTGGTTTGTCCTTGTCCTCTTCCTCGGCATCGCCGCCTACCTC ATCTTCGGCTCTTGGCTCAACTATAACCGGTACGGAGCTAGAGGCTGGGACCTGGTTCCGCACGGCGACATGATC CGCGACGTCCCCTACCTGATGAAAGACTGGGTGAGAAGGGTGCTCAACACCGTCCAAGGAACGGGCAGCAGGGGA GGGTACAGCGCAGTCTAA |
Transcript | >Hirsu2|4718 ATGTATCCGCCTCAATTATCAAGCGTCGCCGTCGCCGTCGCCGTCGCCCTCGCGCCGCTGCGGACGTCGGCGATG CTGCGATGCGAGAACGTGCGAGTCGACGGCCACAGCTACGACCTCTCCCAGCTGTCGGGCCCGCGGTCCGTCGTG ACGTCTCTGTACGAGTCGATCCCCGACGTGTACCACAACACGACCTACACCGTGGACATCTGCAAGCCGCTGAAG AAGAGCGGCAAGGCGAAGAAGACGGAGGAGTGTCCCAACGGGACCCGAGTCTGTGCCATCAAGCGCTTCCTCCAG GGCCAGACGAACGCAGTCGAGCAGGTGGTGGCCATCGCCGGATCTCTGGAGAACGCGGGCGGGTCGCAATTCGAC TACGATGCCGTGCGGTTGAAGACGAGCGACTCCAACAGCGACTCCCAGAAGGAGGGCTTGAGGCTCGTGCTCAAG GGCGGCAAGCACCCCCTGGACGGCCCGGTCGCCGAGCGACGCGAGCAGAGGGCCGTCATCGAGTTTCTCTGCGAT CACAACAAGAAGGGTGACGAGGGCGAGTGGGAGGCCGAGGACAAGTACGACAAGGAGGGCGGGCCGCAGCGGCGA GCCGACGACAAGGGGGGCGACGGCAAGGACGACGGCGGCAACGGCACGTCCGCCATCGAACATCAGCTCCGGAAG CCCGACGCGGCTCTCATATGGGAGAGCTACGAGCGGGAGAAGGATGCCGACGTGCTGCGCCTGACCTGGCACACC AAGTTCGCCTGCGAGACGCAGAGCGGCGGCGGCGGCGGCGGCGGCGACGGCGGCGACGGCGGCAACAAGGGCGAC GGCAACAGCAGCCGCCACTGGGGCTTCTTCACCTGGTTTGTCCTTGTCCTCTTCCTCGGCATCGCCGCCTACCTC ATCTTCGGCTCTTGGCTCAACTATAACCGGTACGGAGCTAGAGGCTGGGACCTGGTTCCGCACGGCGACATGATC CGCGACGTCCCCTACCTGATGAAAGACTGGGTGAGAAGGGTGCTCAACACCGTCCAAGGAACGGGCAGCAGGGGA GGGTACAGCGCAGTCTAA |
Gene | >Hirsu2|4718 ATGTATCCGCCTCAATTATCAAGCGTCGCCGTCGCCGTCGCCGTCGCCCTCGCGCCGCTGCGGACGTCGGCGATG CTGCGATGCGAGAACGTGCGAGTCGACGGCCACAGCTACGACCTCTCCCAGCTGTCGGGCCCGCGGTCCGTCGTG ACGTCTCTGTACGAGTCGATCCCCGACGTGTACCACAACACGACCTACACCGTGGACATCTGCAAGCCGCTGAAG AAGAGCGGCAAGGCGAAGAAGACGGAGGAGTGTCCCAACGGGACCCGAGGTGAGCCTCCTCCGCCTCCTCGTCCG GGCGCGCGCTGACGCCGTGCGTCAACCAGTCTGTGCCATCAAGCGCTTCCTCCAGGGCCAGACGAACGCAGTCGA GCAGGTGGTGGCCATCGCCGGATCTCTGGAGAACGCGGGCGGGTCGCAATTCGACTACGATGCCGTGCGGTTGAA GACGAGCGACTCCAACAGCGACTCCCAGAAGGAGGGCTTGAGGCTCGTGCTCAAGGGCGGCAAGCACCCCCTGGA CGGCCCGGTCGCCGAGCGACGCGAGCAGAGGGCCGTCATCGAGTTTCTCTGCGATCACAACAAGAAGGGTGACGA GGGCGAGTGGGAGGCCGAGGACAAGTACGACAAGGAGGGCGGGCCGCAGCGGCGAGCCGACGACAAGGGGGGCGA CGGCAAGGACGACGGCGGCAACGGCACGTCCGCCATCGAACATCAGCTCCGGAAGCCCGACGCGGCTCTCATATG GGAGAGCTACGAGCGGGAGAAGGATGCCGACGTGCTGCGCCTGACCTGGCACACCAAGTTCGCCTGCGAGACGCA GAGCGGCGGCGGCGGCGGCGGCGGCGACGGCGGCGACGGCGGCAACAAGGGCGACGGCAACAGCAGCCGCCACTG GGGCTTCTTCACCTGGTTTGTCCTTGTGTACGCTCGCGCCCGCCCTGTCCCTGGCCAAGGGTTGTGTCGAGGGCT GTGCTGACTTGTGCTTCCCGCAGCCTCTTCCTCGGCATCGCCGCCTACCTCATCTTCGGCTCTTGGCTCAACTAT AACCGGTACGGAGCTAGAGGCTGGGACCTGGTTCCGCACGGCGACATGATCCGCGACGTCCCCTACCTGATGAAA GACTGGGTGAGAAGGGTGCTCAACACCGTCCAAGGAACGGGCAGCAGGGGAGGGTACAGCGCAGTCTAA |